Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000876g0050 Nicotiana tabacum HOM05D003402 ORTHO05D003939 4.0e-72 274.6 136 100.0
arahy.Tifrunner.gnm1.ann1.YUWQ2H Arachis hypogaea HOM05D003402 ORTHO05D003939 7.4e-18 94.4 112 50.0
Atru.chr1.1993 Acer truncatum HOM05D003402 ORTHO05D003939 9.7e-18 94.0 85 62.4
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.7e-17 93.2 85 61.2
Cpa.g.sc19.128 Carica papaya HOM05D003402 ORTHO05D003939 2.2e-17 92.8 85 61.2
Ciclev10029250m.g Citrus clementina HOM05D003402 ORTHO05D003939 2.2e-17 92.8 85 61.2
Duzib170G0574 Durio zibethinus HOM05D003402 ORTHO05D003939 2.2e-17 92.8 85 61.2
Duzib213G0004 Durio zibethinus HOM05D003402 ORTHO05D003939 2.2e-17 92.8 85 61.2
Gohir.D05G386500 Gossypium hirsutum HOM05D003402 ORTHO05D003939 2.2e-17 92.8 85 61.2
Gohir.D13G133300 Gossypium hirsutum HOM05D003402 ORTHO05D003939 2.2e-17 92.8 85 61.2
Gorai.013G149600 Gossypium raimondii HOM05D003402 ORTHO05D003939 2.2e-17 92.8 85 61.2
Thecc.07G005500 Theobroma cacao HOM05D003402 ORTHO05D003939 2.2e-17 92.8 85 61.2
TWI73G0622 Tripterygium wilfordii HOM05D003402 ORTHO05D003939 2.2e-17 92.8 85 61.2
CANSAT01G1535 Cannabis sativa HOM05D003402 ORTHO05D003939 2.8e-17 92.4 85 61.2
DCAR_023786 Daucus carota HOM05D003402 ORTHO05D003939 2.8e-17 92.4 86 59.3
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 2.8e-17 92.4 85 61.2
MD03G1039400 Malus domestica HOM05D003402 ORTHO05D003939 2.8e-17 92.4 85 61.2
MD11G1039900 Malus domestica HOM05D003402 ORTHO05D003939 2.8e-17 92.4 85 61.2
Manes.05G206500 Manihot esculenta HOM05D003402 ORTHO05D003939 2.8e-17 92.4 85 61.2
Oeu017108.1 Olea europaea HOM05D003402 ORTHO05D003939 2.8e-17 92.4 85 61.2
Prupe.6G031600 Prunus persica HOM05D003402 ORTHO05D003939 2.8e-17 92.4 85 61.2
Prupe.6G032300 Prunus persica HOM05D003402 ORTHO05D003939 2.8e-17 92.4 85 61.2
PGR042G2666 Punica granatum HOM05D003402 ORTHO05D003939 2.8e-17 92.4 85 61.2
PGR083G2770 Punica granatum HOM05D003402 ORTHO05D003939 2.8e-17 92.4 85 61.2
THA.LOC104822711 Tarenaya hassleriana HOM05D003402 ORTHO05D003939 2.8e-17 92.4 85 61.2
Glyma.18G072600 Glycine max HOM05D003402 ORTHO05D003939 3.7e-17 92.0 85 60.0
Glyma.18G072700 Glycine max HOM05D003402 ORTHO05D003939 3.7e-17 92.0 85 60.0
Manes.03G143100 Manihot esculenta HOM05D003402 ORTHO05D003939 3.7e-17 92.0 85 60.0
Nitab4.5_0006644g0010 Nicotiana tabacum HOM05D003402 ORTHO05D003939 3.7e-17 92.0 85 60.0
Nitab4.5_0012601g0010 Nicotiana tabacum HOM05D003402 ORTHO05D003939 3.7e-17 92.0 85 60.0
Phvul.002G190300 Phaseolus vulgaris HOM05D003402 ORTHO05D003939 3.7e-17 92.0 85 60.0
Phvul.006G060100 Phaseolus vulgaris HOM05D003402 ORTHO05D003939 3.7e-17 92.0 85 60.0
Potri.001G469200 Populus trichocarpa HOM05D003402 ORTHO05D003939 3.7e-17 92.0 85 61.2
Potri.011G166000 Populus trichocarpa HOM05D003402 ORTHO05D003939 3.7e-17 92.0 85 61.2
Sabra16G0318200 Salix brachista HOM05D003402 ORTHO05D003939 3.7e-17 92.0 85 61.2
VMungo0251G3320 Vigna mungo HOM05D003402 ORTHO05D003939 3.7e-17 92.0 85 60.0
VMungo0540G0608 Vigna mungo HOM05D003402 ORTHO05D003939 3.7e-17 92.0 85 60.0
CSS0009706 Camellia sinensis var. sinensis HOM05D003402 ORTHO05D003939 4.8e-17 91.7 85 60.0
DCAR_013538 Daucus carota HOM05D003402 ORTHO05D003939 4.8e-17 91.7 85 60.0
Dinv40893 Davidia involucrata HOM05D000015 ORTHO05D002536 4.8e-17 91.7 85 60.0
Dinv41799 Davidia involucrata HOM05D003402 ORTHO05D003939 4.8e-17 91.7 85 60.0
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 4.8e-17 91.7 85 60.0
Gohir.A13G130156 Gossypium hirsutum HOM05D003402 ORTHO05D003939 4.8e-17 91.7 85 60.0
Gorai.009G453200 Gossypium raimondii HOM05D003402 ORTHO05D003939 4.8e-17 91.7 85 60.0
Lj1P897T22 Lonicera japonica HOM05D003402 ORTHO05D003939 4.8e-17 91.7 85 60.0
THA.LOC104801911 Tarenaya hassleriana HOM05D003402 ORTHO05D003939 4.8e-17 91.7 85 58.8
vmacro11627 Vaccinium macrocarpon HOM05D003402 ORTHO05D003939 4.8e-17 91.7 85 60.0
arahy.Tifrunner.gnm1.ann1.Z231WD Arachis hypogaea HOM05D003402 ORTHO05D003939 6.3e-17 91.3 85 58.8
Ciclev10032222m.g Citrus clementina HOM05D003402 ORTHO05D003939 6.3e-17 91.3 85 60.0
Eucgr.K00301 Eucalyptus grandis HOM05D003402 ORTHO05D003939 6.3e-17 91.3 85 60.0
Hma1.2p1_0193F.1_g084090 Hydrangea macrophylla HOM05D003402 ORTHO05D003939 6.3e-17 91.3 85 60.0
Hma1.2p1_2995F.1_g331420 Hydrangea macrophylla HOM05D003402 ORTHO05D003939 6.3e-17 91.3 85 60.0
Actinidia10580 Actinidia chinensis HOM05D003402 ORTHO05D003939 8.2e-17 90.9 85 60.0
Aa31LG10G440 Aethionema arabicum HOM05D003402 ORTHO05D003939 8.2e-17 90.9 85 57.6
Aqoxy4G03102 Aquilegia oxysepala HOM05D003402 ORTHO05D003939 8.2e-17 90.9 85 60.0
AL3G25080 Arabidopsis lyrata HOM05D003402 ORTHO05D003939 8.2e-17 90.9 85 57.6
Peaxi162Scf00359g10124 Petunia axillaris HOM05D003402 ORTHO05D003939 8.2e-17 90.9 83 62.7
CSS0032042 Camellia sinensis var. sinensis HOM05D003402 ORTHO05D003939 1.1e-16 90.5 84 60.7
ClCG01G000820 Citrullus lanatus HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 60.0
ClCG10G004100 Citrullus lanatus HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 60.0
Cc07_g13980 Coffea canephora HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 58.8
MELO3C005848.2 Cucumis melo HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 60.0
MELO3C014081.2 Cucumis melo HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 60.0
CsaV3_3G003950 Cucumis sativus L. HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 60.0
CsaV3_5G000960 Cucumis sativus L. HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 60.0
HanXRQChr08g0232741 Helianthus annuus HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 58.8
Lj5g0012042 Lotus japonicus HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 58.8
SHI18619 Sapria himalayana HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 58.8
Sed0010383 Sechium edule HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 60.0
Sed0014715 Sechium edule HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 60.0
Sed0017285 Sechium edule HOM05D003402 ORTHO05D003939 1.1e-16 90.5 85 60.0
COL.COLO4_07759 Corchorus olitorius HOM05D003402 ORTHO05D003939 1.4e-16 90.1 85 58.8
Lsat_1_v5_gn_5_681 Lactuca sativa HOM05D003402 ORTHO05D003939 1.4e-16 90.1 85 58.8
Thhalv10021508m.g Eutrema salsugineum HOM05D003402 ORTHO05D003939 1.8e-16 89.7 85 57.6
Gohir.A04G003200 Gossypium hirsutum HOM05D003402 ORTHO05D003939 1.8e-16 89.7 85 58.8
Lj6g0015324 Lotus japonicus HOM05D003402 ORTHO05D003939 1.8e-16 89.7 85 57.6
Lalb_Chr20g0115311 Lupinus albus HOM05D003402 ORTHO05D003939 1.8e-16 89.7 85 57.6
Sp1g41330 Schrenkiella parvula HOM05D003402 ORTHO05D003939 1.8e-16 89.7 85 57.6
Sc03g0011690 Simmondsia chinensis HOM05D003402 ORTHO05D003939 1.8e-16 89.7 85 60.0
TAR627G1074 Trochodendron aralioides HOM05D003402 ORTHO05D003939 1.8e-16 89.7 85 58.8
TAR629G1228 Trochodendron aralioides HOM05D003402 ORTHO05D003939 1.8e-16 89.7 85 58.8
CAN.G874.67 Capsicum annuum HOM05D003402 ORTHO05D003939 2.4e-16 89.4 85 60.0
CiPaw.14G096300 Carya illinoinensis HOM05D003402 ORTHO05D003939 2.4e-16 89.4 85 58.8
Rhsim09G0029600 Rhododendron simsii HOM05D003402 ORTHO05D003939 2.4e-16 89.4 85 58.8
Sopen06g034020 Solanum pennellii HOM05D003402 ORTHO05D003939 2.4e-16 89.4 85 58.8
MSTRG.3724 Avicennia marina HOM05D003402 ORTHO05D003939 3.1e-16 89.0 85 58.8
CiPaw.11G208600 Carya illinoinensis HOM05D003402 ORTHO05D003939 3.1e-16 89.0 85 57.6
Ca_07475_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 3.1e-16 89.0 85 57.6
Ca_14849_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 3.1e-16 89.0 85 57.6
Ca_27956_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 3.1e-16 89.0 85 57.6
Lalb_Chr15g0082451 Lupinus albus HOM05D003402 ORTHO05D003939 3.1e-16 89.0 85 56.5
Aa31LG8G510 Aethionema arabicum HOM05D003402 ORTHO05D003939 4.1e-16 88.6 85 56.5
AT3G13230 Arabidopsis thaliana HOM05D003402 ORTHO05D003939 4.1e-16 88.6 85 56.5
BcaB02g10802 Brassica carinata HOM05D003402 ORTHO05D003939 4.1e-16 88.6 85 56.5
Carub.0003s1264 Capsella rubella HOM05D003402 ORTHO05D003939 4.1e-16 88.6 85 56.5
Sp3g11460 Schrenkiella parvula HOM05D003402 ORTHO05D003939 4.1e-16 88.6 85 56.5
arahy.Tifrunner.gnm1.ann1.V7LA8U Arachis hypogaea HOM05D003402 ORTHO05D003939 5.3e-16 88.2 85 56.5
PGSC0003DMG400030475 Solanum tuberosum HOM05D003402 ORTHO05D003939 5.3e-16 88.2 85 57.6
Haze_09893 Corylus avellana HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
Duzib268G1061 Durio zibethinus HOM05D003402 ORTHO05D003939 6.9e-16 87.8 83 59.0
FvH4_5g31610 Fragaria vesca HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
FAN03G3056 Fragaria x ananassa HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
FAN08G1169 Fragaria x ananassa HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
FAN17G0134 Fragaria x ananassa HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
Nn1g09837 Nelumbo nucifera HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 58.8
Os01g0788950 Oryza sativa ssp. japonica HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
Os03g0115200 Oryza sativa ssp. japonica HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
PSO675G7280 Papaver somniferum HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 55.3
RcHm_v2.0_Chr7g0227141 Rosa chinensis HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
SGA_v2.0_scaffold45G17223 Striga asiatica HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
unitig_0.g2650 Utricularia gibba HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
Zm00001eb151110 Zea mays HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
Zm00001eb369690 Zea mays HOM05D003402 ORTHO05D003939 6.9e-16 87.8 85 57.6
ATR0743G241 Amborella trichopoda HOM05D003402 ORTHO05D003939 9.1e-16 87.4 85 57.6
BcaB06g25476 Brassica carinata HOM05D003402 ORTHO05D003939 9.1e-16 87.4 85 55.3
BcaC05g29198 Brassica carinata HOM05D003402 ORTHO05D003939 9.1e-16 87.4 85 55.3
A05p36350 Brassica napus HOM05D003402 ORTHO05D003939 9.1e-16 87.4 85 55.3
C05p54700 Brassica napus HOM05D003402 ORTHO05D003939 9.1e-16 87.4 85 55.3
BolC5t34140H Brassica oleracea HOM05D003402 ORTHO05D003939 9.1e-16 87.4 85 55.3
BraA05t22435Z Brassica rapa HOM05D003402 ORTHO05D003939 9.1e-16 87.4 85 55.3
MBI10_g27408_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 9.1e-16 87.4 85 57.6
MBI10_g27411_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 9.1e-16 87.4 85 57.6
Medtr3g061130 Medicago truncatula HOM05D003402 ORTHO05D003939 9.1e-16 87.4 85 56.5
MSTRG.15682 Avicennia marina HOM05D003402 ORTHO05D003939 1.2e-15 87.0 85 57.6
Cfa016938 Carpinus fangiana HOM05D003402 ORTHO05D003939 1.5e-15 86.7 85 56.5
Psat5g164680 Pisum sativum HOM05D003402 ORTHO05D003939 1.5e-15 86.7 85 56.5
TPR.G17934 Trifolium pratense HOM05D003402 ORTHO05D003939 1.5e-15 86.7 85 56.5
unitig_748.g8474 Utricularia gibba HOM05D003402 ORTHO05D003939 1.5e-15 86.7 85 56.5
ATR0686G129 Amborella trichopoda HOM05D003402 ORTHO05D003939 2.0e-15 86.3 85 57.6
Thhalv10014450m.g Eutrema salsugineum HOM05D003402 ORTHO05D003939 2.0e-15 86.3 85 55.3
CBR_g49013 Chara braunii HOM05D003402 ORTHO05D003939 2.6e-15 85.9 85 54.1
QL08p001639 Quercus lobata HOM05D003402 ORTHO05D003939 2.6e-15 85.9 85 55.3
GSVIVG01008219001 Vitis vinifera HOM05D003402 ORTHO05D003939 2.6e-15 85.9 56 75.0
Migut.K00809 Erythranthe guttata HOM05D003402 ORTHO05D003939 3.4e-15 85.5 85 55.3
SEGI_07786 Sequoiadendron giganteum HOM05D003402 ORTHO05D003939 3.4e-15 85.5 85 55.3
CARHR087880 Cardamine hirsuta HOM05D003402 ORTHO05D003939 4.5e-15 85.1 85 52.9
HPP92_006270 Vanilla planifolia HOM05D003402 ORTHO05D003939 4.5e-15 85.1 85 55.3
AL1G63860 Arabidopsis lyrata HOM05D003402 ORTHO05D003939 7.7e-15 84.3 85 54.1
EL10Ac4g10262 Beta vulgaris HOM05D003402 ORTHO05D003939 7.7e-15 84.3 85 56.5
Mapoly0008s0090 Marchantia polymorpha HOM05D003402 ORTHO05D003939 7.7e-15 84.3 85 54.1
Nn2g11712 Nelumbo nucifera HOM05D003402 ORTHO05D003939 7.7e-15 84.3 81 60.5
Pp3c2_270 Physcomitrium patens HOM05D003402 ORTHO05D003939 7.7e-15 84.3 85 52.9
EL10Ac4g10278 Beta vulgaris HOM05D003402 ORTHO05D003939 1.3e-14 83.6 85 56.5
BcaC08g44215 Brassica carinata HOM05D003402 ORTHO05D003939 1.7e-14 83.2 85 55.3
EL10Ac1g01597 Beta vulgaris HOM05D003402 ORTHO05D003939 2.9e-14 82.4 85 55.3
AUR62026671 Chenopodium quinoa HOM05D003402 ORTHO05D003939 5.0e-14 81.6 85 54.1
AUR62035669 Chenopodium quinoa HOM05D003402 ORTHO05D003939 5.0e-14 81.6 85 54.1
AUR62040577 Chenopodium quinoa HOM05D003402 ORTHO05D003939 5.0e-14 81.6 85 54.1
Sc07g0001990 Simmondsia chinensis HOM05D003402 ORTHO05D003939 5.0e-14 81.6 84 52.4
Peaxi162Scf01158g00027 Petunia axillaris HOM05D003402 ORTHO05D003939 6.5e-14 81.3 63 66.7
Sopen12g018710 Solanum pennellii HOM05D003402 ORTHO05D003939 8.5e-14 80.9 67 61.2
C06p16210 Brassica napus HOM05D003402 ORTHO05D003939 1.1e-13 80.5 64 64.1
BolC6t36818H Brassica oleracea HOM05D003402 ORTHO05D003939 1.1e-13 80.5 64 64.1
CANSAT01G1735 Cannabis sativa HOM05D003402 ORTHO05D003939 1.1e-13 80.5 85 55.3
PRCOL_00004610 Prasinoderma coloniale HOM05D003402 ORTHO05D003939 1.1e-13 80.5 85 50.6
SMO353G0217 Selaginella moellendorffii HOM05D003402 ORTHO05D003939 1.1e-13 80.5 85 49.4
AagrBONN_evm.TU.Sc2ySwM_344.2223 Anthoceros agrestis HOM05D003402 ORTHO05D003939 1.4e-13 80.1 85 51.8
AagrBONN_evm.TU.Sc2ySwM_344.5330 Anthoceros agrestis HOM05D003402 ORTHO05D003939 1.4e-13 80.1 85 51.8
Migut.K00808 Erythranthe guttata HOM05D003402 ORTHO05D003939 1.4e-13 80.1 85 52.9
A05p17340 Brassica napus HOM05D003402 ORTHO05D003939 3.2e-13 79.0 56 69.6
Cre12.g549700 Chlamydomonas reinhardtii HOM05D003402 ORTHO05D003939 1.6e-12 76.6 84 50.0
Medtr5g088410 Medicago truncatula HOM05D003402 ORTHO05D003939 2.1e-12 76.3 85 52.9
Ah.01g016790 Amaranthus hybridus HOM05D003402 ORTHO05D003939 1.4e-11 73.6 85 49.4
MCO11G345 Micromonas commoda HOM05D003402 ORTHO05D003939 1.4e-11 73.6 64 57.8
SGA_v2.0_scaffold17G08096 Striga asiatica HOM05D003402 ORTHO05D003939 1.8e-11 73.2 85 48.2
CANSAT78G0394 Cannabis sativa HOM05D003402 ORTHO05D003939 8.8e-11 70.9 86 47.7
Cfa026698 Carpinus fangiana HOM05D003402 ORTHO05D003939 8.8e-11 70.9 85 44.7
Sed0019842 Sechium edule HOM05D003402 ORTHO05D003939 1.5e-10 70.1 56 66.1
Hund02357 Selenicereus undatus HOM05D003402 ORTHO05D003939 2.0e-10 69.7 56 53.6
BcaB02g10801 Brassica carinata HOM05D003402 ORTHO05D003939 1.3e-09 67.0 72 54.2
Ah.16g107980 Amaranthus hybridus HOM05D003402 ORTHO05D003939 1.7e-09 66.6 58 56.9
Haze_26506 Corylus avellana HOM05D003402 ORTHO05D003939 4.8e-09 65.1 56 53.6
AUR62017904 Chenopodium quinoa HOM05D003402 ORTHO05D003939 6.3e-09 64.7 56 53.6
AUR62017905 Chenopodium quinoa HOM05D003402 ORTHO05D003939 6.3e-09 64.7 56 55.4
AUR62043564 Chenopodium quinoa HOM05D003402 ORTHO05D003939 6.3e-09 64.7 56 53.6
SGA_v2.0_scaffold312G48272 Striga asiatica HOM05D003402 ORTHO05D003939 8.2e-09 64.3 78 48.7
EL10Ac4g07749 Beta vulgaris HOM05D003402 ORTHO05D003939 1.4e-08 63.5 57 52.6
Hund02372 Selenicereus undatus HOM05D003402 ORTHO05D003939 2.9e-06 55.8 64 43.8
Sed0006897 Sechium edule HOM05D001876 ORTHO05D002002 3.8e-06 55.5 81 45.7


User provided reference genes

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