Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.1e-270 936.0 466 100.0
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.1e-261 905.2 466 96.4
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 7.6e-248 860.1 463 91.8
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 1.7e-247 859.0 463 91.6
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 3.8e-247 857.8 466 90.6
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 5.1e-244 847.4 469 90.2
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 1.3e-239 832.8 469 88.7
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 1.6e-205 719.5 463 74.9
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 2.1e-205 719.2 451 77.2
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 2.7e-205 718.8 463 74.1
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.6e-205 718.4 458 75.3
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 1.8e-204 716.1 462 75.1
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 1.2e-203 713.4 456 76.1
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 1.2e-203 713.4 454 76.2
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 1.5e-203 713.0 433 77.6
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 1.5e-203 713.0 456 74.6
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 4.4e-203 711.4 448 76.8
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 5.7e-203 711.1 423 79.9
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 7.5e-203 710.7 458 74.7
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 1.3e-202 709.9 463 74.9
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 2.2e-202 709.1 463 73.7
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 3.1e-201 705.3 452 74.8
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 3.1e-201 705.3 452 74.8
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 3.1e-201 705.3 462 73.6
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 5.4e-201 704.5 447 75.4
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 2.7e-200 702.2 458 73.6
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 3.5e-200 701.8 459 72.5
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 4.5e-200 701.4 507 69.2
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 4.5e-200 701.4 455 74.7
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.7e-200 700.7 458 74.5
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 7.7e-200 700.7 450 75.8
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 1.0e-199 700.3 458 73.6
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 1.3e-199 699.9 447 75.4
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 1.3e-199 699.9 456 73.9
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 3.8e-199 698.4 463 73.7
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 5.0e-199 698.0 447 74.7
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 1.1e-198 696.8 435 76.8
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 1.5e-198 696.4 454 73.3
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 2.5e-198 695.7 447 75.4
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 5.5e-198 694.5 469 72.7
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 7.2e-198 694.1 549 63.6
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 7.2e-198 694.1 496 70.2
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 4.7e-197 691.4 422 78.0
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 8.0e-197 690.6 452 73.5
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 8.0e-197 690.6 456 72.1
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 1.4e-196 689.9 459 74.3
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.8e-196 689.5 476 71.0
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 3.0e-196 688.7 426 76.3
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 3.0e-196 688.7 459 73.6
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 4.0e-196 688.3 447 74.5
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 8.9e-196 687.2 459 73.4
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.0e-195 686.0 463 71.5
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 2.6e-195 685.6 442 74.2
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 3.4e-195 685.3 452 73.7
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 3.4e-195 685.3 451 73.6
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 5.7e-195 684.5 456 73.0
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 9.8e-195 683.7 473 71.0
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 1.7e-194 682.9 459 72.5
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 1.7e-194 682.9 454 72.2
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 3.7e-194 681.8 481 70.1
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 3.7e-194 681.8 458 71.6
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 4.9e-194 681.4 449 73.7
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 4.9e-194 681.4 452 73.0
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 6.3e-194 681.0 454 72.9
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 8.3e-194 680.6 455 73.0
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 9.2e-193 677.2 488 68.6
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 1.2e-192 676.8 448 72.5
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 1.6e-192 676.4 454 71.6
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 1.6e-192 676.4 456 71.3
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 3.5e-192 675.2 457 70.9
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.5e-192 674.9 493 67.7
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 4.5e-192 674.9 461 70.1
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 1.0e-191 673.7 458 70.5
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 2.3e-191 672.5 454 71.6
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.3e-191 672.5 458 71.8
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 5.0e-191 671.4 457 70.0
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 6.6e-191 671.0 454 71.4
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 2.5e-190 669.1 472 70.3
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 2.5e-190 669.1 455 71.9
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 3.3e-190 668.7 453 70.6
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 5.6e-190 667.9 454 70.9
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 1.2e-189 666.8 444 71.8
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 3.6e-189 665.2 454 70.9
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 3.6e-189 665.2 454 70.9
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 6.1e-189 664.5 456 71.3
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.8e-188 662.9 466 69.7
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 2.3e-188 662.5 455 71.0
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 3.4e-187 658.7 474 67.9
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 3.7e-186 655.2 576 59.2
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 8.3e-186 654.1 449 71.5
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.3e-183 646.7 454 69.6
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 2.3e-183 646.0 458 69.0
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 1.8e-180 636.3 459 67.8
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 7.1e-177 624.4 455 66.2
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 1.0e-175 620.5 453 64.9
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 8.6e-175 617.5 457 67.4
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 9.5e-174 614.0 422 70.4
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 2.9e-170 602.4 372 78.2
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 8.6e-167 590.9 374 75.1
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 2.8e-165 585.9 380 74.2
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 8.1e-165 584.3 360 78.3
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 1.1e-158 563.9 357 77.0
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 1.7e-151 540.0 450 60.2
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 1.5e-150 537.0 283 90.5
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 3.6e-149 532.3 396 66.2
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 5.3e-148 528.5 462 58.7
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 1.2e-147 527.3 475 58.5
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 4.5e-147 525.4 456 59.9
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 7.1e-145 518.1 455 58.7
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 6.0e-144 515.0 452 59.7
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 1.2e-136 490.7 444 57.4
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 1.6e-128 463.8 271 78.6
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 6.7e-127 458.4 418 59.6
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 5.0e-122 442.2 456 52.4
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 3.1e-116 422.9 272 72.8
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 4.1e-108 396.0 252 72.2
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 8.2e-101 371.7 521 43.6
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 1.6e-99 367.5 252 71.4
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 5.0e-98 362.5 449 45.0
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.6e-96 356.3 250 71.6
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 4.4e-94 349.4 539 41.6
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 8.3e-85 318.5 460 37.8
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 5.9e-83 312.4 243 65.8
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 5.9e-83 312.4 250 64.8
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 1.3e-69 268.1 242 57.4
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 1.2e-67 261.5 162 73.5
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 2.8e-64 250.4 195 65.6
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.4e-62 243.0 220 59.1
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 7.8e-59 232.3 175 65.7
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 9.5e-57 225.3 119 97.5
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 1.5e-54 218.0 242 50.4
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 9.2e-52 208.8 162 63.6
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 9.2e-52 208.8 155 67.1
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.1e-47 195.3 98 95.9
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 5.6e-41 172.9 117 66.7
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 5.3e-39 166.4 117 67.5
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 1.2e-38 165.2 103 81.6
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 3.4e-38 163.7 115 71.3
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 1.4e-36 158.3 107 75.7
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 7.1e-36 156.0 112 67.0
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 1.3e-32 145.2 91 79.1
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 2.8e-32 144.1 93 68.8
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.4e-31 141.0 344 30.2
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 1.4e-20 105.1 103 56.3
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 1.4e-20 105.1 178 42.1
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 1.4e-20 105.1 178 42.1
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 1.4e-20 105.1 178 42.1
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.2e-19 102.1 56 92.9
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 2.5e-17 94.4 65 67.7
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 2.4e-15 87.8 98 48.0
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 3.1e-15 87.4 65 64.6
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 5.3e-15 86.7 435 24.8
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 2.9e-13 80.9 44 84.1
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 1.0e-10 72.4 42 81.0
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 1.8e-10 71.6 68 55.9
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 9.7e-09 65.9 138 38.4
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 1.3e-08 65.5 266 27.1
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.3e-08 65.5 266 27.1
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 1.3e-08 65.5 266 27.1
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.6e-08 65.1 266 27.4
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.6e-08 65.1 266 27.1
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 2.2e-08 64.7 147 36.1
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 1.4e-07 62.0 274 25.9
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.4e-07 62.0 37 81.1
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 2.4e-07 61.2 264 26.9
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 2.4e-07 61.2 233 29.2
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 2.4e-07 61.2 242 26.9
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 2.4e-07 61.2 51 58.8
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 3.1e-07 60.8 275 28.0
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 4.1e-07 60.5 264 26.9
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 4.1e-07 60.5 37 78.4
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 6.9e-07 59.7 239 27.6
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 6.9e-07 59.7 104 40.4
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 9.0e-07 59.3 264 26.1
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 9.0e-07 59.3 244 26.6
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.2e-06 58.9 271 25.8
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 1.5e-06 58.5 263 28.1
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 1.5e-06 58.5 308 26.0
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 2.6e-06 57.8 264 26.9
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 3.4e-06 57.4 244 28.7
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 3.4e-06 57.4 274 27.4
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 3.4e-06 57.4 38 65.8


User provided reference genes

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