Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 1.7e-230 802.4 429 100.0
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 2.6e-178 629.0 429 81.4
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 2.7e-138 496.1 424 67.9
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 5.6e-136 488.4 424 67.2
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 1.2e-135 487.3 428 66.4
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 2.0e-130 469.9 454 63.7
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 5.6e-112 408.7 403 60.8
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 2.6e-109 399.8 377 63.1
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 3.4e-109 399.4 423 58.4
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 3.5e-106 389.4 445 56.9
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 7.8e-106 388.3 396 58.6
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 5.1e-105 385.6 425 56.5
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 8.7e-105 384.8 424 56.6
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 2.5e-104 383.3 420 57.4
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 4.3e-104 382.5 365 60.5
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 9.6e-104 381.3 430 55.6
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 9.6e-104 381.3 393 60.1
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 1.3e-103 380.9 386 58.0
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 2.1e-103 380.2 430 55.6
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 3.6e-103 379.4 369 59.6
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 3.1e-102 376.3 424 55.2
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 4.9e-100 369.0 411 55.2
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 8.4e-100 368.2 456 53.1
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 5.4e-99 365.5 413 54.2
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 5.4e-99 365.5 398 57.5
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 1.6e-98 364.0 429 54.3
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 1.6e-98 364.0 321 65.7
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.0e-97 361.3 429 53.8
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 1.0e-97 361.3 444 52.0
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 1.0e-97 361.3 469 52.9
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 1.7e-97 360.5 457 51.2
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.7e-97 360.5 429 53.8
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 5.1e-97 359.0 429 53.6
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 5.1e-97 359.0 429 53.6
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 5.1e-97 359.0 405 53.6
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 6.6e-97 358.6 405 53.6
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 6.6e-97 358.6 380 56.3
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.5e-96 357.5 349 59.9
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 3.3e-96 356.3 411 55.7
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 3.3e-96 356.3 388 55.7
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 7.3e-96 355.1 430 52.1
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 7.3e-96 355.1 364 57.4
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 1.3e-95 354.4 407 52.8
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 8.1e-95 351.7 322 62.1
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 8.1e-95 351.7 322 62.1
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 1.8e-94 350.5 426 50.9
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 2.4e-94 350.1 331 61.6
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 4.0e-94 349.4 392 55.4
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 4.0e-94 349.4 362 57.2
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 4.0e-94 349.4 380 56.3
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 4.0e-94 349.4 405 54.1
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 9.0e-94 348.2 431 53.4
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 1.2e-93 347.8 362 57.2
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 2.0e-93 347.1 429 52.0
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 2.6e-93 346.7 369 56.1
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 3.4e-93 346.3 389 54.2
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 3.4e-93 346.3 325 61.8
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 4.5e-93 345.9 390 54.1
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 9.9e-93 344.7 403 54.3
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 1.3e-92 344.4 363 56.5
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 1.3e-92 344.4 414 52.4
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 1.3e-92 344.4 343 58.3
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 2.2e-92 343.6 362 56.6
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 2.9e-92 343.2 390 53.8
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.8e-92 342.8 347 58.8
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 3.8e-92 342.8 378 56.1
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 3.8e-92 342.8 311 62.4
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 6.4e-92 342.0 329 59.9
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 8.4e-92 341.7 363 57.0
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 1.9e-91 340.5 324 59.9
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 1.9e-91 340.5 420 53.3
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 2.4e-91 340.1 357 57.4
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 5.4e-91 339.0 300 64.3
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 7.1e-91 338.6 204 84.3
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 7.1e-91 338.6 362 55.0
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 1.6e-90 337.4 424 51.7
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 2.7e-90 336.7 337 59.9
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.9e-90 335.1 221 79.6
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 1.0e-89 334.7 362 55.5
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 1.3e-89 334.3 374 54.0
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 1.8e-89 334.0 356 55.3
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 9.6e-88 328.2 430 51.6
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 1.6e-87 327.4 425 50.1
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 5.3e-86 322.4 347 53.9
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 3.4e-85 319.7 406 48.3
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 3.8e-84 316.2 243 74.9
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 1.0e-81 308.1 374 51.9
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 1.0e-81 308.1 403 49.4
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 3.9e-81 306.2 371 49.9
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 5.1e-81 305.8 348 54.3
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 2.1e-79 300.4 370 51.6
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 2.1e-79 300.4 359 51.3
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 1.3e-76 291.2 353 53.8
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 5.5e-75 285.8 368 50.8
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 3.0e-73 280.0 308 53.9
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 6.7e-73 278.9 447 45.6
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 5.7e-72 275.8 508 40.6
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 3.7e-71 273.1 274 57.3
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 3.7e-71 273.1 513 39.8
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 6.3e-71 272.3 427 45.9
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 6.9e-70 268.9 187 72.7
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 1.5e-69 267.7 358 48.0
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 5.0e-68 262.7 227 59.9
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 6.5e-68 262.3 450 44.2
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 8.5e-68 261.9 278 57.6
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 4.6e-66 256.1 157 84.1
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 1.1e-64 251.5 345 48.7
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 1.5e-61 241.1 337 49.6
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 1.5e-61 241.1 264 53.8
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 7.9e-58 228.8 351 46.7
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 7.4e-56 222.2 129 86.0
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 3.7e-55 219.9 316 42.4
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 1.4e-54 218.0 208 52.9
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 5.0e-52 209.5 202 55.9
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 9.4e-51 205.3 136 77.9
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 1.7e-47 194.5 375 38.7
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 2.8e-47 193.7 121 85.1
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.6e-45 187.2 208 49.0
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 3.6e-42 176.8 102 82.4
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 1.6e-34 151.4 271 38.0
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 5.7e-32 142.9 275 39.6
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 1.9e-27 127.9 176 43.2
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 5.5e-27 126.3 171 49.7
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 1.4e-25 121.7 90 70.0
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 8.9e-25 119.0 199 36.7
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.0e-24 117.9 263 32.3
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 4.1e-14 83.6 127 44.9
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 1.7e-12 78.2 66 65.2
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 8.9e-09 65.9 36 88.9
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 2.0e-08 64.7 89 51.7
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 9.2e-06 55.8 51 54.9


User provided reference genes

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