Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000743g0080 Nicotiana tabacum HOM05D003177 ORTHO05D003481 2.0e-129 465.7 224 100.0
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 2.0e-44 183.3 222 44.6
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 2.6e-36 156.4 223 39.0
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 4.9e-35 152.1 222 36.5
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 6.4e-35 151.8 223 39.5
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 8.4e-35 151.4 222 37.4
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 2.4e-34 149.8 222 36.0
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 5.5e-34 148.7 220 36.8
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 1.2e-33 147.5 222 35.6
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 1.6e-33 147.1 221 36.7
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 4.6e-33 145.6 222 35.6
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 7.9e-33 144.8 222 36.5
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 1.0e-32 144.4 245 34.3
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 3.9e-32 142.5 221 34.4
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 3.9e-32 142.5 222 38.3
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 3.9e-32 142.5 222 35.6
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 5.1e-32 142.1 222 36.0
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.5e-31 140.6 222 35.6
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 9.6e-31 137.9 222 35.1
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 1.6e-30 137.1 222 35.6
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.1e-30 136.7 222 35.1
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 2.1e-30 136.7 224 33.0
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.8e-30 136.3 222 35.1
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.8e-30 136.3 222 33.8
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 6.2e-30 135.2 222 34.2
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 8.1e-30 134.8 211 37.4
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.1e-30 134.8 222 34.2
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.4e-29 134.0 222 34.7
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 1.4e-29 134.0 221 33.9
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 3.1e-29 132.9 237 37.1
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 4.0e-29 132.5 222 32.0
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 4.0e-29 132.5 222 32.0
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 4.0e-29 132.5 222 32.0
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 5.3e-29 132.1 222 32.4
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 5.3e-29 132.1 222 32.4
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 1.5e-28 130.6 222 33.8
Glyma.U031131 Glycine max HOM05D003177 ORTHO05D003481 2.0e-28 130.2 205 35.6
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 4.5e-28 129.0 194 38.1
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 5.8e-28 128.6 222 32.4
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 5.8e-28 128.6 222 31.1
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 7.6e-28 128.3 222 33.3
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 7.6e-28 128.3 187 40.1
CsaV3_UNG228990 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.3e-27 127.5 165 38.8
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 1.7e-27 127.1 222 32.4
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 2.2e-27 126.7 222 32.9
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 2.2e-27 126.7 222 32.9
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 2.2e-27 126.7 190 37.4
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 2.2e-27 126.7 190 37.4
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 2.9e-27 126.3 204 35.3
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 3.8e-27 125.9 223 33.6
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 4.9e-27 125.6 223 31.8
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 6.5e-27 125.2 190 37.4
VMungo1127G0088 Vigna mungo HOM05D003177 ORTHO05D003481 8.4e-27 124.8 225 32.4
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.1e-26 124.4 223 31.4
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 1.9e-26 123.6 189 39.2
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 2.5e-26 123.2 249 30.1
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 3.2e-26 122.9 216 32.4
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 3.2e-26 122.9 216 33.3
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 4.2e-26 122.5 222 30.6
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 5.5e-26 122.1 224 32.1
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 9.3e-26 121.3 212 32.5
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 9.3e-26 121.3 207 32.9
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 1.6e-25 120.6 227 32.2
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 2.7e-25 119.8 222 33.3
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 2.7e-25 119.8 223 30.0
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 2.7e-25 119.8 190 36.8
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.6e-25 119.0 180 33.9
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 4.6e-25 119.0 222 35.1
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 1.3e-24 117.5 174 35.1
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 1.8e-24 117.1 187 31.0
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.8e-24 117.1 232 32.8
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 2.3e-24 116.7 200 33.5
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 3.0e-24 116.3 176 37.5
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.0e-24 116.3 180 33.3
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.9e-24 115.9 180 33.3
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 3.9e-24 115.9 213 35.7
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 5.1e-24 115.5 233 32.2
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 6.7e-24 115.2 180 32.8
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 6.7e-24 115.2 221 31.7
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 8.7e-24 114.8 184 39.1
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 1.1e-23 114.4 209 32.1
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 1.9e-23 113.6 204 35.3
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 2.5e-23 113.2 152 37.5
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 5.7e-23 112.1 181 34.8
CAN.G337.89 Capsicum annuum HOM05D003177 ORTHO05D003481 9.6e-23 111.3 209 34.4
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 1.3e-22 110.9 222 31.1
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 1.3e-22 110.9 172 34.9
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 1.3e-22 110.9 204 34.8
FvH4_3g42340 Fragaria vesca HOM05D003177 ORTHO05D003481 3.7e-22 109.4 222 32.0
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.7e-22 109.4 204 34.3
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 4.8e-22 109.0 194 31.4
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 4.8e-22 109.0 161 34.8
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 6.3e-22 108.6 222 28.8
FvH4_3g42560 Fragaria vesca HOM05D003177 ORTHO05D003481 1.1e-21 107.8 222 32.0
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 1.1e-21 107.8 222 27.5
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 1.8e-21 107.1 213 35.7
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 2.4e-21 106.7 201 34.8
arahy.Tifrunner.gnm1.ann1.LTHE3G Arachis hypogaea HOM05D003177 ORTHO05D003481 3.1e-21 106.3 163 33.1
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 4.1e-21 105.9 192 30.2
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 4.1e-21 105.9 190 33.2
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 9.0e-21 104.8 189 31.7
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 9.0e-21 104.8 193 30.1
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 1.2e-20 104.4 192 30.2
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 2.6e-20 103.2 163 39.3
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 5.9e-20 102.1 159 35.2
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.3e-19 100.9 194 29.4
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.2e-19 100.1 193 30.1
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 2.2e-19 100.1 163 37.4
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 2.2e-19 100.1 164 36.6
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 3.8e-19 99.4 195 30.3
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 3.8e-19 99.4 204 32.8
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 8.5e-19 98.2 164 34.8
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 3.2e-18 96.3 222 30.2
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 5.5e-18 95.5 153 34.0
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 5.5e-18 95.5 164 34.8
FAN28G1104 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.6e-17 92.4 256 28.5
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 6.1e-17 92.0 229 29.7
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 7.9e-17 91.7 172 32.0
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.3e-16 90.9 335 23.3
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 3.0e-16 89.7 150 32.7
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 3.9e-16 89.4 120 36.7
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 6.7e-16 88.6 137 32.1
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 1.1e-15 87.8 108 41.7
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 1.9e-15 87.0 158 32.3
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 2.5e-15 86.7 141 30.5
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 9.7e-15 84.7 94 45.7
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 2.8e-14 83.2 177 32.8
Glyma.12G135400 Glycine max HOM05D003177 ORTHO05D003481 3.7e-14 82.8 104 39.4
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 8.2e-14 81.6 155 32.9
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 3.4e-12 76.3 168 31.0
FAN11G2904 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.3e-11 74.3 222 25.7
Medtr8g070020 Medicago truncatula HOM05D003177 ORTHO05D003481 1.3e-11 74.3 154 31.2
FAN11G0078 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.4e-10 70.9 216 26.4
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 1.9e-10 70.5 156 28.2
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 4.2e-10 69.3 124 33.9
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 4.2e-10 69.3 134 32.8
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 5.5e-10 68.9 170 27.6
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 7.2e-10 68.6 134 29.1
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 2.3e-08 63.5 103 32.0
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 3.0e-08 63.2 133 31.6
Lju3590A0T11 Lonicera japonica HOM05D003177 ORTHO05D003481 2.0e-07 60.5 137 27.7
arahy.Tifrunner.gnm1.ann1.JSI4TH Arachis hypogaea HOM05D003177 ORTHO05D003481 2.6e-07 60.1 100 34.0
arahy.Tifrunner.gnm1.ann1.2UU78P Arachis hypogaea HOM05D003177 ORTHO05D003481 7.4e-07 58.5 100 33.0
AL1G67350 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 6.3e-06 55.5 132 28.0


User provided reference genes

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