Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 0.0e+00 1412.1 688 100.0
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 9.2e-258 893.6 519 85.0
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 4.6e-257 891.3 532 83.6
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 8.9e-253 877.1 525 83.2
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 1.1e-250 870.2 538 82.0
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.3e-214 750.4 534 70.2
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.8e-214 749.2 403 93.1
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 7.1e-210 734.6 532 69.5
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.2e-209 733.8 533 69.2
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 2.7e-209 732.6 538 68.8
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.3e-208 730.3 536 70.0
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 1.3e-208 730.3 521 69.9
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 3.0e-208 729.2 453 77.7
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 3.0e-208 729.2 455 76.7
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 1.5e-207 726.9 459 75.4
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 3.3e-207 725.7 455 76.5
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 3.3e-207 725.7 545 67.0
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 4.3e-207 725.3 537 68.0
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 9.7e-207 724.2 528 68.4
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 3.7e-206 722.2 519 69.9
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 1.8e-205 719.9 459 74.7
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 1.5e-204 716.8 538 67.7
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 2.0e-204 716.5 528 68.6
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 3.4e-204 715.7 460 74.6
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 7.6e-204 714.5 529 67.1
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 7.6e-204 714.5 558 65.6
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.9e-203 712.6 525 68.2
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 8.5e-203 711.1 472 73.5
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 1.9e-202 709.9 434 76.5
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 7.2e-202 708.0 455 75.2
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 7.2e-202 708.0 539 64.9
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 9.4e-202 707.6 529 66.9
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.6e-201 706.8 537 67.4
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.6e-201 706.8 538 65.8
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 2.1e-201 706.4 545 64.4
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 2.1e-201 706.4 503 69.4
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 3.6e-201 705.7 511 68.7
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 7.9e-201 704.5 550 64.4
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 7.9e-201 704.5 455 74.7
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 1.4e-200 703.7 528 67.6
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 1.4e-200 703.7 463 72.1
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.3e-200 703.0 455 74.1
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.9e-200 702.2 455 74.3
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 3.9e-200 702.2 500 69.6
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 5.1e-200 701.8 460 73.7
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 5.1e-200 701.8 610 59.8
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 6.7e-200 701.4 454 72.7
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 8.8e-200 701.0 537 66.3
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 1.5e-199 700.3 456 72.1
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 1.5e-199 700.3 455 74.1
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.9e-199 699.9 535 67.1
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 2.5e-199 699.5 542 64.0
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.5e-199 699.5 467 72.4
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 2.5e-199 699.5 530 65.5
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 1.3e-198 697.2 475 70.1
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.8e-198 696.0 452 74.3
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 3.7e-198 695.7 483 70.2
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 6.3e-198 694.9 535 65.2
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 6.3e-198 694.9 454 73.8
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 1.1e-197 694.1 481 69.2
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 1.4e-197 693.7 539 65.5
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 2.0e-196 689.9 466 71.5
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 2.6e-196 689.5 439 79.7
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 2.6e-196 689.5 457 71.6
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 5.9e-196 688.3 452 73.0
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 5.9e-196 688.3 541 65.1
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 7.7e-196 688.0 458 71.6
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 7.7e-196 688.0 522 66.5
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 6.5e-195 684.9 444 74.8
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 1.1e-194 684.1 499 68.7
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 3.2e-194 682.6 486 69.5
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 1.6e-193 680.2 485 68.2
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 2.1e-193 679.9 452 71.7
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 2.7e-193 679.5 454 71.8
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 3.6e-193 679.1 493 67.3
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 2.3e-192 676.4 603 59.9
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 3.0e-192 676.0 527 63.9
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 3.0e-192 676.0 548 63.7
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 6.7e-192 674.9 455 71.4
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 1.1e-191 674.1 521 66.2
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 1.1e-191 674.1 513 64.7
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 1.5e-191 673.7 513 64.5
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 2.6e-191 672.9 528 63.8
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 2.6e-191 672.9 496 66.1
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 3.3e-191 672.5 513 64.7
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 4.4e-191 672.2 447 72.9
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 1.7e-190 670.2 651 56.2
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 2.8e-190 669.5 427 74.9
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 8.2e-190 667.9 504 65.7
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 1.1e-189 667.5 513 64.1
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 1.1e-189 667.5 531 62.5
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 1.8e-189 666.8 513 64.1
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 2.4e-189 666.4 471 68.6
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 4.5e-188 662.1 496 67.5
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.1e-186 657.5 460 70.4
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 1.1e-186 657.5 468 67.9
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 3.6e-185 652.5 449 68.6
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 8.0e-185 651.4 465 71.0
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 1.4e-184 650.6 520 62.3
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 5.3e-181 638.6 528 60.6
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 6.5e-179 631.7 411 72.3
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 1.1e-178 630.9 495 65.1
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.1e-178 630.9 528 60.2
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 4.2e-178 629.0 411 71.5
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 2.0e-175 620.2 449 65.9
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 7.0e-173 611.7 444 67.1
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.0e-168 597.8 572 55.4
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.6e-167 593.2 455 64.0
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 4.4e-167 592.4 454 63.0
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 1.4e-165 587.4 421 67.9
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 1.8e-165 587.0 470 61.1
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 9.1e-165 584.7 571 54.1
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 8.6e-163 578.2 442 62.2
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 3.0e-160 569.7 460 61.7
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 8.9e-160 568.2 586 52.6
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 2.8e-158 563.1 586 51.9
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 4.1e-157 559.3 465 57.6
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 1.5e-154 550.8 456 62.5
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 5.2e-152 542.3 445 59.8
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.0e-151 540.4 348 74.7
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 2.0e-151 540.4 451 59.2
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 5.8e-135 485.7 478 52.9
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 3.9e-131 473.0 351 67.5
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 8.4e-118 428.7 285 73.7
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 8.7e-115 418.7 255 76.1
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 6.9e-112 409.1 496 46.0
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 3.1e-104 383.6 541 41.8
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.7e-102 377.9 264 67.8
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.9e-102 377.1 316 60.4
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 7.7e-87 325.9 257 66.1
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.3e-81 308.5 326 52.5
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 1.5e-79 301.6 242 59.1
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 2.6e-74 284.3 255 53.7
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 8.2e-73 279.3 214 59.3
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 2.8e-65 254.2 216 64.8
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 1.5e-53 215.3 165 62.4
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.7e-47 194.5 114 83.3
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 4.4e-42 177.2 135 64.4
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 1.3e-41 175.6 101 85.1
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 1.7e-41 175.3 157 59.9
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 3.9e-38 164.1 143 55.9
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 6.6e-30 136.7 160 50.6
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.4e-27 129.0 148 50.0
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 5.2e-27 127.1 107 61.7
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 3.0e-14 84.7 64 70.3
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 3.3e-13 81.3 57 57.9
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 7.3e-13 80.1 52 80.8
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 7.3e-13 80.1 52 80.8
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 3.4e-10 71.2 57 59.6
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 5.8e-10 70.5 44 81.8
MBI04_g21513_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D019566 2.7e-07 61.6 77 53.2
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 3.5e-07 61.2 50 72.0


User provided reference genes

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