Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000638g0270 Nicotiana tabacum HOM05D003674 ORTHO05D004226 3.3e-107 391.7 201 100.0
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 1.0e-71 273.9 204 74.0
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 6.1e-69 264.6 187 76.5
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 1.4e-68 263.5 206 70.4
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 5.7e-67 258.1 190 74.2
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.4e-60 236.9 194 66.5
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 3.0e-60 235.7 166 74.1
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.2e-59 233.8 182 67.6
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 5.7e-59 231.5 208 62.5
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 2.4e-57 226.1 211 57.8
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 7.0e-57 224.6 184 63.0
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 9.2e-57 224.2 194 60.8
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 2.7e-56 222.6 196 58.2
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 4.5e-56 221.9 182 64.3
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 2.3e-55 219.5 183 62.8
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 2.3e-55 219.5 183 63.9
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 2.3e-55 219.5 201 59.2
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 5.0e-55 218.4 201 57.7
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 8.6e-55 217.6 181 64.1
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 1.1e-54 217.2 191 60.7
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 1.1e-54 217.2 196 63.3
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 1.9e-54 216.5 182 62.1
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 2.5e-54 216.1 202 57.9
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 3.3e-54 215.7 189 59.3
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 4.3e-54 215.3 203 58.1
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 7.3e-54 214.5 184 59.8
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 7.3e-54 214.5 184 59.8
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 7.3e-54 214.5 204 57.4
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 9.5e-54 214.2 182 60.4
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 1.2e-53 213.8 200 61.0
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 1.6e-53 213.4 200 57.5
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.6e-53 213.4 182 61.5
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 1.6e-53 213.4 205 56.6
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 2.1e-53 213.0 182 59.3
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 2.1e-53 213.0 190 60.0
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 4.7e-53 211.8 191 56.5
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 6.1e-53 211.5 194 55.7
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 8.0e-53 211.1 182 60.4
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 8.0e-53 211.1 182 61.5
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 1.8e-52 209.9 192 60.9
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 2.3e-52 209.5 202 56.4
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 3.1e-52 209.1 183 61.2
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 4.0e-52 208.8 183 61.2
Peaxi162Scf00132g00118 Petunia axillaris HOM05D003674 ORTHO05D004226 4.0e-52 208.8 133 79.7
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 4.0e-52 208.8 202 55.4
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 5.2e-52 208.4 184 58.7
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 5.2e-52 208.4 202 56.4
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 6.8e-52 208.0 184 60.9
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 6.8e-52 208.0 188 62.2
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 1.2e-51 207.2 200 57.5
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 1.2e-51 207.2 204 54.9
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 2.6e-51 206.1 191 61.3
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 2.6e-51 206.1 191 61.3
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 2.6e-51 206.1 206 53.9
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 3.4e-51 205.7 204 56.4
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 3.4e-51 205.7 201 54.2
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 4.4e-51 205.3 204 55.4
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 4.4e-51 205.3 205 55.6
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 5.8e-51 204.9 183 58.5
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 1.3e-50 203.8 201 52.2
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 2.2e-50 203.0 192 56.2
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 2.2e-50 203.0 191 59.2
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 8.3e-50 201.1 183 59.0
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 8.3e-50 201.1 197 53.8
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 8.3e-50 201.1 180 56.7
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 1.4e-49 200.3 225 48.4
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 2.4e-49 199.5 191 59.7
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 3.2e-49 199.1 194 54.1
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 3.2e-49 199.1 182 54.4
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 9.2e-49 197.6 191 55.5
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 1.6e-48 196.8 201 51.2
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 2.0e-48 196.4 195 54.9
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 2.7e-48 196.1 195 55.4
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 3.5e-48 195.7 199 51.8
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 3.5e-48 195.7 183 56.8
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 4.6e-48 195.3 191 55.5
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 4.6e-48 195.3 192 52.6
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 4.6e-48 195.3 192 52.6
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 6.0e-48 194.9 195 54.9
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 6.0e-48 194.9 184 54.3
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 6.0e-48 194.9 180 52.2
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 1.0e-47 194.1 199 51.8
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 1.0e-47 194.1 193 52.3
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 1.0e-47 194.1 184 53.3
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.3e-47 193.7 193 55.4
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 1.7e-47 193.4 182 57.1
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 3.0e-47 192.6 191 54.5
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 3.0e-47 192.6 183 52.5
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 8.6e-47 191.0 195 52.8
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 8.6e-47 191.0 195 52.8
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 8.6e-47 191.0 179 55.9
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 1.1e-46 190.7 195 54.4
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 1.1e-46 190.7 195 52.8
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 1.1e-46 190.7 195 52.8
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 1.9e-46 189.9 201 51.7
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 7.3e-46 188.0 198 52.0
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 1.2e-45 187.2 195 53.3
PGSC0003DMG400018342 Solanum tuberosum HOM05D003674 ORTHO05D004226 1.2e-45 187.2 132 72.7
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 1.6e-45 186.8 203 53.7
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 2.3e-44 183.0 160 58.8
MSTRG.14344 Avicennia marina HOM05D003674 ORTHO05D004226 7.5e-43 177.9 162 58.6
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 7.5e-43 177.9 174 56.3
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 7.5e-43 177.9 189 50.8
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 9.8e-43 177.6 202 52.0
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 9.8e-43 177.6 190 50.0
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 1.3e-42 177.2 189 50.8
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 2.9e-42 176.0 160 58.1
Migut.H01179 Erythranthe guttata HOM05D003674 ORTHO05D004226 3.7e-42 175.6 143 60.8
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 4.1e-41 172.2 182 54.9
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 1.7e-39 166.8 195 49.2
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 8.6e-39 164.5 197 49.7
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 1.9e-38 163.3 196 50.5
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 5.6e-38 161.8 205 47.8
Nitab4.5_0000512g0010 Nicotiana tabacum HOM05D003674 ORTHO05D004226 9.5e-38 161.0 113 72.6
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 4.7e-37 158.7 195 47.2
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 1.2e-35 154.1 184 45.7
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 1.5e-35 153.7 185 51.9
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.5e-35 153.7 181 48.1
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.5e-35 153.7 181 48.1
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 2.6e-35 152.9 142 57.7
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 5.8e-35 151.8 199 46.7
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 7.5e-35 151.4 200 48.0
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.9e-34 148.7 181 45.3
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 6.0e-32 141.7 183 45.9
MSTRG.14340 Avicennia marina HOM05D003674 ORTHO05D004226 1.8e-28 130.2 110 60.0
Hma1.2p1_1836F.1_g304700 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 8.9e-28 127.9 130 53.8
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 1.2e-27 127.5 188 46.3
SEGI_19203 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 9.9e-27 124.4 123 52.8
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 6.4e-26 121.7 194 41.2
Oeu010989.1 Olea europaea HOM05D003674 ORTHO05D004226 3.2e-25 119.4 152 48.7
arahy.Tifrunner.gnm1.ann1.Y3H9JV Arachis hypogaea HOM05D003674 ORTHO05D004226 9.2e-25 117.9 108 47.2
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 1.9e-22 110.2 76 73.7
Nitab4.5_0009871g0010 Nicotiana tabacum HOM05D003674 ORTHO05D004226 9.6e-22 107.8 50 96.0
Haze_13163 Corylus avellana HOM05D003674 ORTHO05D004226 8.7e-15 84.7 71 59.2
arahy.Tifrunner.gnm1.ann1.WCYV83 Arachis hypogaea HOM05D003674 ORTHO05D004226 1.1e-14 84.3 78 46.2
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 4.3e-14 82.4 77 59.7
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 5.6e-14 82.0 73 57.5
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 5.6e-14 82.0 73 60.3
MSTRG.14333 Avicennia marina HOM05D003674 ORTHO05D004226 9.9e-11 71.2 62 59.7
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 4.3e-06 55.8 41 82.9
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.6e-06 54.7 158 27.8


User provided reference genes

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