Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 0.0e+00 1496.9 756 100.0
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 0.0e+00 1180.6 792 80.4
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 0.0e+00 1173.3 780 78.6
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 0.0e+00 1116.3 781 76.4
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 0.0e+00 1116.3 781 76.4
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 0.0e+00 1114.8 781 76.4
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 0.0e+00 1081.2 825 67.3
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 1.6e-303 1045.8 779 70.5
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 4.3e-301 1037.7 781 71.4
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.5e-290 1002.7 783 66.0
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 1.2e-271 939.9 789 63.5
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.6e-266 922.9 845 58.8
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.7e-266 922.2 791 63.8
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 8.0e-263 910.6 788 62.9
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 2.3e-262 909.1 782 63.0
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 2.0e-261 906.0 784 60.3
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 7.5e-261 904.0 782 61.9
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 3.7e-260 901.7 674 68.4
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 4.8e-260 901.4 790 61.5
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 5.9e-258 894.4 788 61.4
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 5.0e-257 891.3 783 60.2
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 6.8e-254 880.9 789 61.3
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 4.4e-253 878.2 787 61.2
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.3e-252 876.7 786 61.2
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 4.9e-252 874.8 790 60.4
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 8.3e-252 874.0 788 61.7
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.8e-251 872.8 785 61.9
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 4.5e-250 868.2 689 67.8
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 6.6e-249 864.4 782 60.2
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 9.5e-248 860.5 785 61.0
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 1.2e-247 860.1 781 60.9
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 3.6e-247 858.6 785 60.4
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 1.4e-246 856.7 775 60.5
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.2e-245 853.6 784 60.6
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.2e-245 853.6 784 60.6
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 7.0e-243 844.3 777 60.5
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 4.6e-242 841.6 792 59.1
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 6.0e-242 841.3 797 57.7
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.3e-241 840.1 788 59.8
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 4.3e-240 835.1 787 58.4
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 7.3e-240 834.3 801 58.7
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 2.1e-239 832.8 827 57.8
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.2e-239 831.2 786 59.7
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.4e-238 830.1 769 58.9
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 5.2e-238 828.2 794 56.5
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 1.2e-237 827.0 795 58.9
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.5e-237 826.6 786 59.0
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 1.5e-237 826.6 787 58.1
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 4.4e-237 825.1 787 58.7
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 9.8e-237 823.9 799 57.4
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 2.9e-236 822.4 795 58.7
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 4.9e-236 821.6 780 58.1
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 9.2e-235 817.4 786 58.9
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 1.6e-234 816.6 786 58.9
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.7e-233 813.1 791 58.3
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 1.7e-233 813.1 788 58.5
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 5.1e-233 811.6 784 58.7
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 5.1e-233 811.6 781 57.4
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.1e-232 810.4 811 57.1
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 1.9e-232 809.7 783 55.6
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 2.1e-231 806.2 790 57.2
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.8e-231 805.8 784 58.0
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.7e-231 805.1 784 57.9
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 8.1e-231 804.3 784 56.4
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 8.1e-231 804.3 785 58.0
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-230 802.4 785 57.8
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 4.0e-230 802.0 787 57.3
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 3.4e-229 798.9 796 56.3
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 3.4e-229 798.9 783 56.2
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 9.9e-229 797.3 788 56.6
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 9.9e-229 797.3 798 56.1
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 4.9e-228 795.0 785 58.0
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.0e-225 787.3 794 56.8
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 2.3e-225 786.2 798 55.3
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 3.0e-225 785.8 790 55.8
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 2.8e-223 779.2 840 53.6
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 4.7e-223 778.5 720 59.0
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 8.1e-223 777.7 799 57.2
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.4e-222 776.9 674 63.8
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 2.0e-221 773.1 793 55.1
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 4.4e-221 771.9 786 57.0
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 8.4e-220 767.7 795 55.6
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 2.7e-218 762.7 786 55.5
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 1.7e-217 760.0 782 52.8
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 5.6e-216 755.0 784 54.3
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 5.6e-216 755.0 785 54.9
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 4.8e-215 751.9 782 54.2
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 5.3e-214 748.4 791 55.0
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.7e-212 743.4 787 54.6
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 4.9e-212 741.9 791 54.6
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 1.9e-211 740.0 786 53.4
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 3.2e-211 739.2 786 54.5
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 1.0e-209 734.2 784 53.6
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 2.3e-209 733.0 784 53.3
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 4.8e-207 725.3 784 53.6
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 1.4e-206 723.8 786 53.6
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 3.4e-205 719.2 784 52.7
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 5.4e-203 711.8 877 50.2
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 2.1e-202 709.9 791 52.0
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 2.5e-200 703.0 785 51.8
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 2.6e-197 693.0 794 51.0
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 1.4e-195 687.2 783 51.5
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 1.2e-194 684.1 786 51.5
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 5.3e-190 668.7 787 49.9
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 6.3e-183 645.2 832 48.0
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.0e-181 640.2 586 60.2
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 4.6e-178 629.0 755 48.7
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 7.4e-176 621.7 601 59.2
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 3.7e-175 619.4 1244 37.5
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.5e-165 587.4 542 58.7
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 1.3e-164 584.3 802 44.4
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.4e-158 564.3 488 62.7
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 6.8e-153 545.4 798 46.2
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 8.8e-153 545.0 807 42.0
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 1.9e-147 527.3 803 43.6
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 1.9e-147 527.3 797 44.9
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 1.0e-137 495.0 806 40.1
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 3.4e-128 463.4 470 53.2
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 1.1e-126 458.4 784 39.0
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 6.0e-109 399.4 360 58.6
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 4.3e-107 393.3 388 57.7
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.8e-105 387.9 363 57.9
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.8e-105 387.9 390 55.1
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 5.8e-96 356.3 483 46.2
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.9e-92 343.6 304 60.9
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 1.1e-89 335.5 372 54.0
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 9.0e-81 305.8 477 42.1
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 4.5e-80 303.5 332 54.8
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.4e-72 277.3 288 54.2
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-67 262.3 166 75.9
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 2.8e-66 257.7 783 30.4
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 4.1e-65 253.8 187 65.8
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 1.2e-64 252.3 913 28.0
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 5.3e-57 226.9 148 75.0
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 3.7e-50 204.1 726 28.7
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.7e-45 187.2 271 42.8
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.7e-40 171.4 271 40.6
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-39 169.1 98 85.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.8e-35 152.9 90 81.1
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 4.8e-34 150.6 187 46.0
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.3e-34 149.8 271 37.3
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.4e-33 148.3 82 89.0
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-31 142.5 120 63.3
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-31 142.5 82 82.9
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 2.9e-31 141.4 165 53.3
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.0e-31 140.6 84 83.3
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 5.7e-27 127.1 155 51.0
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 9.8e-27 126.3 140 52.9
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-26 125.6 67 85.1
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.7e-26 125.6 65 95.4
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.3e-26 123.6 64 95.3
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 1.8e-25 122.1 97 63.9
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 1.2e-24 119.4 93 66.7
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.3e-23 115.9 70 80.0
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 2.9e-23 114.8 81 71.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-22 112.5 61 86.9
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.3e-22 111.3 61 85.2
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 4.3e-22 110.9 92 63.0
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 9.5e-22 109.8 115 55.7
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 2.8e-21 108.2 61 90.2
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 6.1e-21 107.1 145 40.7
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 5.2e-20 104.0 155 43.2
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 4.4e-19 100.9 270 32.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-18 99.4 60 78.3
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 1.3e-18 99.4 154 42.2
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 5.4e-17 94.0 51 86.3
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 4.6e-16 90.9 115 48.7
Ah.15g100450 Amaranthus hybridus HOM05D035932 ORTHO05D026494 1.7e-15 89.0 83 60.2
Ah.15g100480 Amaranthus hybridus HOM05D035932 ORTHO05D026494 1.7e-15 89.0 87 57.5
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 5.0e-15 87.4 49 85.7
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.3e-14 84.7 77 53.2
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 6.2e-13 80.5 79 54.4
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 5.2e-12 77.4 191 34.6
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-10 71.6 72 45.8
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 4.1e-09 67.8 140 39.3
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.7e-08 65.1 60 60.0
A02p09200 Brassica napus HOM05D061471 ORTHO05D041986 3.0e-07 61.6 32 81.2
BraA02t05987Z Brassica rapa HOM05D061471 ORTHO05D041986 3.0e-07 61.6 32 81.2
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 8.6e-07 60.1 41 68.3
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 1.5e-06 59.3 65 46.2
Actinidia30340 Actinidia chinensis HOM05D004098 ORTHO05D053527 3.3e-06 58.2 37 73.0
Ah.09g231660 Amaranthus hybridus HOM05D002420 ORTHO05D002422 7.3e-06 57.0 33 78.8


User provided reference genes

Program Settings