Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 5.0e-193 677.9 436 100.0
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 3.2e-179 632.1 436 93.1
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 3.3e-176 622.1 437 91.8
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 9.5e-176 620.5 437 92.4
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 2.3e-174 615.9 445 90.8
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 3.7e-172 608.6 436 89.9
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 7.4e-144 514.6 437 73.7
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 2.6e-141 506.1 439 74.7
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 4.0e-134 482.3 440 66.8
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 2.0e-133 479.9 446 73.3
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 7.6e-133 478.0 447 75.4
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 1.3e-132 477.2 426 69.7
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 1.4e-131 473.8 455 74.7
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 9.3e-131 471.1 436 69.0
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 2.7e-130 469.5 446 70.9
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.3e-129 467.2 339 99.1
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 3.9e-129 465.7 438 71.5
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 8.7e-129 464.5 442 70.8
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 2.5e-128 463.0 438 74.4
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 2.5e-128 463.0 439 71.1
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 3.3e-128 462.6 505 61.2
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 3.3e-128 462.6 448 61.8
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 2.8e-127 459.5 463 66.7
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 8.2e-127 458.0 438 66.9
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 1.8e-126 456.8 443 75.2
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 1.8e-126 456.8 439 74.0
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.8e-126 456.8 437 69.8
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 3.1e-126 456.1 446 71.1
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.2e-125 454.1 409 77.3
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 1.2e-125 454.1 443 67.9
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 1.5e-125 453.8 438 66.2
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 3.4e-125 452.6 437 73.2
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 5.9e-125 451.8 448 73.0
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 7.7e-125 451.4 439 69.5
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 1.7e-124 450.3 439 71.5
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 2.2e-124 449.9 438 59.8
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 1.1e-123 447.6 438 71.5
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 3.2e-123 446.0 263 82.1
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.2e-123 446.0 437 74.8
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 5.5e-123 445.3 441 73.2
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 7.2e-123 444.9 437 74.4
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 1.6e-122 443.7 444 74.1
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 1.6e-122 443.7 439 74.9
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 2.1e-122 443.4 448 71.2
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 2.7e-122 443.0 436 73.9
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.6e-122 442.6 418 66.3
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 7.9e-122 441.4 428 60.7
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 7.9e-122 441.4 437 73.5
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 7.9e-122 441.4 513 59.8
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 1.0e-121 441.0 447 69.8
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.8e-121 440.3 437 75.3
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 5.1e-121 438.7 514 58.6
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 1.5e-120 437.2 452 61.7
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 3.3e-120 436.0 461 67.9
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 5.7e-120 435.3 437 66.1
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 2.8e-119 433.0 441 71.0
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 8.2e-119 431.4 524 63.2
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 1.4e-118 430.6 437 66.1
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 4.1e-118 429.1 439 66.7
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 9.1e-118 427.9 436 57.6
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 9.1e-118 427.9 246 85.8
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 1.2e-117 427.6 418 70.6
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 1.5e-117 427.2 435 70.3
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 2.0e-117 426.8 456 61.0
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 2.0e-117 426.8 422 69.2
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 2.0e-117 426.8 451 67.4
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 2.6e-117 426.4 445 70.6
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 3.4e-117 426.0 484 65.1
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 5.9e-117 425.2 418 56.7
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 7.7e-117 424.9 456 61.0
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 1.0e-116 424.5 451 67.4
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 1.3e-116 424.1 490 65.7
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.9e-116 422.9 422 68.2
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 1.4e-115 420.6 429 54.3
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 3.2e-115 419.5 442 57.0
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 5.5e-115 418.7 256 78.1
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.5e-115 418.7 439 63.8
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 5.5e-115 418.7 433 70.4
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 7.2e-115 418.3 448 67.2
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 7.2e-115 418.3 454 65.0
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 2.1e-114 416.8 234 83.3
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 2.7e-114 416.4 259 80.3
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 3.6e-114 416.0 448 67.6
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 7.9e-114 414.8 451 63.6
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.0e-113 414.5 425 65.4
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.0e-113 414.5 435 65.1
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.0e-113 414.5 453 61.8
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 2.3e-113 413.3 437 63.6
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 5.1e-113 412.1 437 64.5
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 1.1e-112 411.0 472 68.6
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 2.2e-111 406.8 437 66.1
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 1.1e-110 404.4 435 71.3
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 4.1e-110 402.5 456 59.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.0e-109 400.2 242 80.6
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 4.5e-109 399.1 440 55.7
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 5.9e-109 398.7 455 62.0
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 9.7e-104 381.3 228 78.9
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 7.7e-101 371.7 262 69.5
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.5e-96 357.5 225 75.1
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 2.0e-96 357.1 391 74.7
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.0e-96 357.1 241 71.0
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.0e-96 357.1 241 71.0
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 9.8e-96 354.8 393 63.4
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 1.3e-95 354.4 266 68.8
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 6.3e-95 352.1 229 71.6
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 9.1e-94 348.2 483 46.2
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 4.0e-89 332.8 393 64.9
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 1.6e-82 310.8 339 66.7
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.3e-79 301.2 154 87.0
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.7e-76 290.8 148 88.5
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.3e-71 274.6 209 66.5
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.0e-68 265.0 144 81.9
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 7.1e-62 242.3 146 78.8
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 7.3e-59 232.3 350 60.6
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 2.1e-58 230.7 261 49.8
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 3.6e-58 229.9 324 68.8
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 3.1e-57 226.9 204 54.4
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 5.2e-57 226.1 174 65.5
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 5.2e-57 226.1 346 63.9
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 6.8e-57 225.7 218 50.5
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 2.6e-56 223.8 148 74.3
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 3.4e-56 223.4 114 91.2
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 4.4e-56 223.0 331 60.1
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 1.7e-52 211.1 326 65.0
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.0e-52 210.3 325 53.8
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 4.9e-47 193.0 101 87.1
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 1.3e-44 184.9 322 54.3
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.5e-43 181.4 96 85.4
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.5e-43 181.4 96 87.5
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 2.8e-42 177.2 98 82.7
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 3.6e-42 176.8 190 53.2
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 5.8e-40 169.5 296 68.6
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 1.3e-39 168.3 292 63.0
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 1.3e-39 168.3 96 81.2
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 7.1e-38 162.5 130 59.2
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 6.0e-37 159.5 84 84.5
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 6.6e-36 156.0 83 83.1
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 9.6e-35 152.1 85 83.5
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 8.1e-34 149.1 80 87.5
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 3.4e-32 143.7 80 85.0
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 1.4e-30 138.3 79 81.0
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 3.3e-27 127.1 331 45.0
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.4e-25 120.9 261 54.0
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.2e-24 118.6 83 71.1
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 8.4e-23 112.5 289 57.4
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.6e-21 108.2 293 49.1
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 8.7e-20 102.4 77 70.1
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 1.5e-19 101.7 74 63.5
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 2.5e-19 100.9 60 80.0
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 8.2e-18 95.9 68 63.2
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 4.5e-16 90.1 268 38.1
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 5.1e-12 76.6 43 83.7
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 5.7e-11 73.2 63 52.4
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 1.5e-08 65.1 57 61.4
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.2e-07 61.2 57 54.4


User provided reference genes

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