Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.5e-104 382.1 192 100.0
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 7.1e-83 310.8 192 85.4
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 2.7e-82 308.9 192 85.4
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 2.3e-81 305.8 192 83.3
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 5.1e-81 304.7 192 83.3
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 5.1e-81 304.7 192 83.3
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.8e-79 298.1 189 79.9
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.8e-79 298.1 189 79.9
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-78 297.0 189 79.4
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 5.3e-78 294.7 192 79.2
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 1.5e-77 293.1 190 79.5
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 2.6e-77 292.4 192 79.2
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 3.4e-77 292.0 192 76.0
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.8e-77 291.2 192 78.1
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 5.8e-77 291.2 192 78.1
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 7.6e-77 290.8 192 78.6
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 7.6e-77 290.8 192 79.2
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 9.9e-77 290.4 190 78.4
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.3e-76 290.0 192 77.1
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.3e-76 290.0 192 78.1
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-76 290.0 189 78.3
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.2e-76 289.3 191 79.6
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 2.2e-76 289.3 192 78.6
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 2.2e-76 289.3 192 78.1
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 3.8e-76 288.5 191 77.0
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.9e-76 288.1 192 78.1
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 6.4e-76 287.7 191 77.5
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.1e-75 287.0 192 76.6
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.4e-75 286.6 192 77.1
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.9e-75 286.2 192 77.1
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.4e-75 285.8 191 76.4
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 3.2e-75 285.4 190 76.3
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 3.2e-75 285.4 192 76.6
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.2e-75 285.4 191 76.4
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 4.2e-75 285.0 189 77.8
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.2e-75 285.0 189 77.8
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.2e-75 285.0 189 77.8
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 4.2e-75 285.0 189 77.8
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 5.5e-75 284.6 192 76.0
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 5.5e-75 284.6 192 76.0
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.1e-75 284.3 189 77.8
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 9.3e-75 283.9 191 76.4
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 9.3e-75 283.9 190 76.3
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.2e-74 283.5 192 77.1
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 1.2e-74 283.5 192 75.5
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 2.1e-74 282.7 192 74.5
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 2.7e-74 282.3 192 76.0
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 2.7e-74 282.3 192 75.5
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 3.5e-74 282.0 192 76.0
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 4.6e-74 281.6 189 76.2
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 7.9e-74 280.8 192 75.5
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.0e-73 280.4 192 75.5
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 2.3e-73 279.3 192 75.5
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 2.3e-73 279.3 192 75.0
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 2.3e-73 279.3 189 75.7
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.3e-73 279.3 190 76.3
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 8.7e-73 277.3 192 72.9
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 1.1e-72 276.9 192 75.0
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.1e-72 276.9 192 75.5
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 3.3e-72 275.4 192 72.9
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.6e-72 274.6 192 73.4
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 5.6e-72 274.6 192 73.4
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 7.4e-72 274.2 192 72.4
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 9.6e-72 273.9 192 71.9
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 9.6e-72 273.9 192 73.4
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.3e-71 273.5 192 72.4
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.6e-71 273.1 192 71.9
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 2.1e-71 272.7 230 65.2
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.8e-71 272.3 192 72.4
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.8e-71 272.3 192 72.4
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 4.8e-71 271.6 192 72.4
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 8.2e-71 270.8 192 71.9
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 8.2e-71 270.8 192 72.4
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.4e-70 270.0 192 71.9
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.4e-70 270.0 192 72.4
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.4e-70 270.0 192 72.9
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 2.4e-70 269.2 192 71.9
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.3e-70 268.1 190 72.1
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 9.0e-70 267.3 191 73.8
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.2e-69 266.9 192 74.0
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 2.6e-69 265.8 192 69.3
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 4.5e-69 265.0 172 77.3
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 5.8e-69 264.6 192 70.8
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.7e-68 263.1 192 70.3
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 1.7e-68 263.1 172 78.5
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 2.2e-68 262.7 239 60.7
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.8e-68 261.9 192 69.3
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.1e-67 260.4 220 63.6
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.1e-67 260.4 249 59.0
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.1e-67 260.4 190 69.5
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.1e-67 260.4 192 69.3
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.1e-67 260.4 172 76.2
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 4.2e-67 258.5 189 73.0
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 7.1e-67 257.7 172 76.7
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 7.1e-67 257.7 181 75.7
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.2e-66 256.9 168 78.6
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.6e-66 256.5 192 69.8
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.6e-66 256.5 190 68.4
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 3.5e-66 255.4 192 69.3
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 3.5e-66 255.4 192 66.7
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 4.6e-66 255.0 192 68.8
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 6.0e-66 254.6 181 75.1
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 6.0e-66 254.6 171 74.9
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 7.9e-66 254.2 166 78.3
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.8e-65 253.1 176 75.6
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.8e-65 253.1 172 73.8
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.3e-65 252.7 170 75.3
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 2.5e-64 249.2 189 69.3
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 4.3e-64 248.4 189 70.4
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 1.6e-63 246.5 173 71.7
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.3e-63 244.6 176 72.7
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-61 240.0 168 75.0
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 2.0e-61 239.6 190 62.6
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.6e-61 239.2 214 64.0
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.0e-60 237.3 189 66.1
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 2.9e-60 235.7 172 69.8
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.9e-59 233.0 147 80.3
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.6e-58 229.9 188 65.4
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 1.0e-57 227.3 192 64.6
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.4e-57 226.9 149 75.8
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 1.5e-56 223.4 172 66.3
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 4.8e-55 218.4 189 61.4
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 9.1e-54 214.2 192 62.5
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.5e-53 213.4 175 64.6
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.6e-53 212.6 147 78.9
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 1.9e-51 206.5 146 71.2
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.5e-51 206.1 180 60.6
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 3.2e-51 205.7 147 75.5
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-50 203.8 189 60.8
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 1.6e-50 203.4 214 51.4
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.1e-50 203.0 155 69.0
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 2.1e-50 203.0 191 59.2
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.3e-49 199.5 144 74.3
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 3.0e-49 199.1 144 73.6
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 3.0e-49 199.1 144 73.6
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 6.7e-49 198.0 144 72.9
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 2.0e-48 196.4 146 72.6
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 9.7e-48 194.1 175 62.3
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 2.4e-46 189.5 147 71.4
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 9.1e-46 187.6 159 62.9
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 7.7e-45 184.5 182 61.0
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.8e-44 182.2 159 59.7
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-38 163.7 103 85.4
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 5.3e-38 161.8 129 69.0
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 1.7e-36 156.8 113 66.4
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 8.5e-36 154.5 113 73.5
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.8e-33 146.7 82 90.2
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.7e-28 130.2 104 63.5
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.2e-28 129.8 126 56.3
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 6.5e-28 128.3 94 69.1
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.5e-27 125.2 73 89.0
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.6e-26 123.6 83 73.5
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.4e-22 110.5 126 50.8
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.1e-22 109.4 74 73.0
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.6e-21 107.1 75 68.0
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.5e-21 105.9 68 70.6
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.2e-19 99.0 64 76.6
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.6e-18 95.9 71 70.4
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 2.0e-16 90.1 162 35.8
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.7e-15 87.0 181 35.4
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 1.7e-15 87.0 49 89.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 1.7e-15 87.0 49 89.8
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.4e-14 82.0 44 77.3
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 2.5e-11 73.2 188 34.0
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 9.5e-11 71.2 75 58.7
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.8e-10 69.7 38 78.9


User provided reference genes

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