Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 2.7e-241 838.2 410 100.0
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 4.7e-217 757.7 385 94.8
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.2e-209 733.0 403 87.8
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 1.1e-205 719.9 404 85.6
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 2.1e-201 705.7 408 82.8
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.5e-194 682.9 408 79.7
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 5.8e-191 671.0 410 78.0
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 1.2e-175 620.2 407 72.5
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 8.7e-171 604.0 407 70.3
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.3e-169 600.1 415 70.6
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 2.2e-166 589.3 406 69.2
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.9e-166 588.2 407 69.0
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 8.4e-166 587.4 399 70.2
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.1e-165 587.0 394 70.3
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.9e-165 586.3 407 69.0
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 4.2e-165 585.1 406 68.5
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.6e-164 583.2 406 68.5
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 2.7e-164 582.4 408 68.9
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 4.6e-164 581.6 406 68.5
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 4.6e-164 581.6 406 68.5
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.0e-163 580.5 408 66.7
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 3.3e-162 575.5 410 65.4
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 5.6e-162 574.7 403 66.3
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.1e-161 572.8 396 68.2
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.8e-161 571.6 396 67.9
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 1.8e-160 569.7 404 66.3
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.8e-160 569.7 407 67.1
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 2.4e-160 569.3 403 67.0
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 2.4e-160 569.3 404 67.6
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 3.1e-160 568.9 400 67.8
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.3e-160 568.2 401 68.3
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 5.3e-160 568.2 406 66.0
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 6.9e-160 567.8 396 67.2
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 9.0e-160 567.4 401 66.8
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.2e-159 567.0 399 67.9
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.5e-159 566.6 404 65.8
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.5e-159 566.6 409 67.0
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.0e-159 566.2 409 66.0
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 7.6e-159 564.3 400 67.2
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.3e-158 563.5 401 67.3
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.3e-158 563.5 401 67.6
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 2.9e-158 562.4 401 67.8
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 6.5e-158 561.2 404 64.9
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.1e-157 560.5 408 66.7
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.4e-157 560.1 400 67.2
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.9e-157 559.7 400 67.0
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 4.2e-157 558.5 407 65.8
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 9.3e-157 557.4 399 65.9
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 1.6e-156 556.6 404 65.8
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.1e-156 556.2 419 64.0
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 2.1e-156 556.2 399 65.9
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 2.7e-156 555.8 399 65.7
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 2.7e-156 555.8 399 65.7
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 4.6e-156 555.1 399 65.7
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.3e-155 553.5 394 67.5
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.8e-155 553.1 393 65.9
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 5.1e-155 551.6 393 65.6
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 8.7e-155 550.8 407 65.8
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.1e-154 550.4 399 63.4
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.1e-154 550.4 401 65.1
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.5e-154 550.1 406 64.5
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 3.3e-154 548.9 400 65.0
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.3e-154 548.9 401 65.6
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 4.3e-154 548.5 404 65.6
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 4.3e-154 548.5 401 65.8
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 5.7e-154 548.1 399 64.7
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 9.6e-154 547.4 406 64.0
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.3e-153 547.0 401 64.6
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 4.8e-153 545.0 403 63.8
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 8.2e-153 544.3 407 61.9
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.1e-152 543.9 406 64.3
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.1e-152 543.9 403 64.0
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.8e-152 543.1 400 63.8
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 9.0e-152 540.8 402 63.2
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.5e-151 540.0 406 63.5
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.0e-151 539.7 402 62.4
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 2.6e-151 539.3 400 64.0
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.4e-151 538.9 401 64.1
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 4.5e-151 538.5 394 64.7
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 4.5e-151 538.5 400 63.2
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.0e-150 537.3 397 63.0
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.9e-150 535.8 403 62.0
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.8e-150 535.4 405 62.7
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 3.8e-150 535.4 401 62.6
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 5.0e-150 535.0 421 62.5
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 4.2e-149 531.9 400 63.8
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 5.5e-149 531.6 418 62.0
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.6e-148 530.0 392 65.3
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 7.9e-148 527.7 399 61.9
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 3.0e-147 525.8 419 61.1
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 6.7e-147 524.6 400 63.8
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 5.7e-146 521.5 405 62.7
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.1e-144 517.3 384 63.5
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 5.3e-144 515.0 391 62.4
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.3e-144 515.0 387 62.5
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.6e-143 512.7 404 62.9
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 4.5e-143 511.9 396 62.1
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.9e-143 511.5 387 62.5
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 2.1e-140 503.1 394 59.9
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 4.6e-140 501.9 415 59.3
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 4.6e-140 501.9 392 59.4
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 3.0e-139 499.2 389 59.4
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 3.0e-139 499.2 392 58.4
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 4.3e-138 495.4 417 59.5
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-137 493.8 388 59.8
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-137 493.8 388 59.8
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 2.2e-137 493.0 394 59.9
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 3.1e-136 489.2 391 60.4
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.0e-134 484.2 390 56.4
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 2.9e-134 482.6 385 58.7
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 5.0e-134 481.9 403 60.5
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 4.2e-133 478.8 390 57.9
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 5.5e-133 478.4 403 56.6
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.4e-131 473.8 391 55.0
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.5e-130 470.3 391 55.0
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.2e-129 466.5 375 58.4
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.2e-129 466.5 375 58.4
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 7.7e-127 458.0 412 56.1
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 6.7e-123 444.9 385 54.5
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.0e-122 443.4 410 52.4
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.3e-118 430.6 400 54.5
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.2e-117 426.0 401 53.1
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.1e-116 423.3 408 51.2
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 3.0e-115 419.5 385 51.2
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 7.2e-109 398.3 375 54.1
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 2.1e-108 396.7 398 51.0
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.2e-107 392.1 399 51.4
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 5.4e-104 382.1 390 51.0
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 5.5e-101 372.1 408 45.8
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 2.1e-100 370.2 414 45.4
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 2.8e-100 369.8 415 45.1
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.1e-93 347.8 395 48.9
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 5.6e-93 345.5 406 46.6
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 1.5e-90 337.4 403 45.4
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 3.4e-90 336.3 397 43.8
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 9.8e-90 334.7 403 46.2
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 2.9e-81 306.6 403 42.9
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 1.9e-80 303.9 394 43.4
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 7.1e-80 302.0 247 57.1
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 6.6e-78 295.4 300 51.0
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 4.0e-75 286.2 403 43.9
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.1e-67 261.5 186 65.1
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 6.0e-63 245.7 228 54.4
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.9e-56 224.2 423 31.4
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 1.2e-55 221.5 157 60.5
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 3.5e-39 166.8 155 54.2
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 9.0e-35 152.1 113 61.9
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.0e-33 148.7 371 29.1
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.9e-33 147.1 112 64.3
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.8e-33 146.7 317 30.9
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.4e-24 118.2 78 67.9
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 9.4e-16 89.0 405 25.2
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.1e-08 65.5 45 66.7
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 2.7e-07 60.8 60 48.3
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 4.0e-06 57.0 69 49.3


User provided reference genes

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