Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.5e-136 490.0 346 100.0
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.7e-119 433.3 332 94.9
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 3.9e-116 422.2 348 85.9
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 1.1e-115 420.6 348 85.6
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 3.1e-113 412.5 343 81.6
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 7.0e-113 411.4 346 85.0
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 9.1e-113 411.0 335 86.9
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 2.0e-88 330.1 352 59.1
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 4.5e-88 328.9 354 61.9
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 7.8e-88 328.2 350 60.3
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 1.0e-87 327.8 348 60.9
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 3.3e-86 322.8 352 58.5
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 2.8e-85 319.7 355 59.7
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 3.0e-84 316.2 335 60.3
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 3.0e-84 316.2 352 57.7
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.3e-82 310.8 352 60.2
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 9.2e-81 304.7 350 55.7
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 1.1e-78 297.7 350 54.6
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.1e-78 297.7 351 56.4
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 1.9e-78 297.0 352 61.4
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 1.8e-76 290.4 350 55.1
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 4.0e-76 289.3 327 57.5
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.2e-75 287.7 348 55.5
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.0e-75 287.0 352 54.3
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 3.4e-75 286.2 355 53.5
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 4.4e-75 285.8 350 57.7
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 4.4e-75 285.8 370 52.2
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 5.8e-75 285.4 355 56.9
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 1.7e-74 283.9 350 54.3
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.2e-74 283.5 361 52.4
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 4.9e-74 282.3 292 60.3
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 6.4e-74 282.0 353 53.0
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 8.3e-74 281.6 353 54.7
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.4e-73 280.0 359 52.1
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.6e-72 277.3 301 58.8
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 7.8e-72 275.0 290 70.3
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 3.9e-71 272.7 377 53.1
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 8.6e-71 271.6 341 52.8
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 1.5e-70 270.8 304 56.2
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 7.3e-70 268.5 326 62.9
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.2e-69 267.7 366 52.2
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 1.2e-69 267.7 318 53.8
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 2.8e-69 266.5 352 53.7
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 6.2e-69 265.4 389 49.6
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 2.3e-68 263.5 351 53.0
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 5.2e-68 262.3 312 57.7
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 8.9e-68 261.5 349 51.6
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 2.0e-67 260.4 349 50.7
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 2.6e-67 260.0 352 51.7
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 5.8e-67 258.8 355 51.3
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 8.3e-66 255.0 303 53.1
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.1e-65 254.6 338 51.2
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.1e-65 254.6 353 56.9
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 7.1e-65 251.9 234 63.2
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 9.2e-65 251.5 383 57.2
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 2.7e-64 250.0 366 48.1
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.7e-63 247.3 341 51.9
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 1.7e-63 247.3 347 50.7
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 8.6e-63 245.0 352 52.0
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.3e-62 243.0 351 50.7
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 7.3e-62 241.9 338 50.0
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.2e-61 241.1 370 53.8
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.2e-61 241.1 381 45.4
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.2e-61 241.1 293 52.6
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 1.6e-61 240.7 381 45.4
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.8e-61 240.0 349 49.6
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 3.6e-61 239.6 349 49.3
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 6.2e-61 238.8 305 55.1
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.4e-60 237.7 211 65.4
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 1.4e-60 237.7 370 53.5
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 2.4e-60 236.9 381 52.5
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 3.1e-60 236.5 207 63.8
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 3.1e-60 236.5 210 63.8
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 3.1e-60 236.5 305 51.1
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 4.0e-60 236.1 359 49.0
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 1.5e-59 234.2 350 56.0
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 1.5e-59 234.2 350 56.0
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 1.5e-59 234.2 348 49.7
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 2.0e-59 233.8 305 52.1
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 5.8e-59 232.3 339 49.3
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 7.6e-59 231.9 304 53.9
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 1.3e-58 231.1 317 51.7
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 1.7e-58 230.7 362 47.8
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 2.2e-58 230.3 347 59.1
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 6.4e-58 228.8 335 47.5
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 6.4e-58 228.8 209 63.6
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 5.4e-57 225.7 369 48.0
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 7.1e-57 225.3 209 61.2
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 7.1e-57 225.3 209 61.2
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 1.2e-56 224.6 353 60.1
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 2.1e-56 223.8 348 48.3
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 2.1e-56 223.8 293 50.2
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 3.5e-56 223.0 352 48.6
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 7.8e-56 221.9 369 44.7
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.7e-55 220.7 326 52.1
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 5.1e-55 219.2 313 48.9
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 2.5e-54 216.9 304 52.3
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 7.3e-54 215.3 286 55.9
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 7.3e-54 215.3 353 45.3
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 2.1e-53 213.8 350 45.7
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.4e-52 211.1 313 47.6
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 1.8e-52 210.7 310 49.0
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 1.8e-52 210.7 389 42.9
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 6.9e-52 208.8 348 52.0
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.2e-51 208.0 353 46.5
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.5e-51 207.6 286 54.2
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.0e-51 207.2 286 53.8
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 2.0e-51 207.2 290 65.9
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 7.6e-51 205.3 271 50.2
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-49 201.4 209 58.4
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.9e-49 200.7 348 44.5
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 1.6e-48 197.6 215 57.7
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.5e-48 196.4 286 53.1
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 4.6e-48 196.1 288 48.6
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 8.7e-47 191.8 174 63.8
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.6e-45 187.6 346 53.8
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 3.6e-45 186.4 350 43.1
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 8.1e-45 185.3 289 56.4
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 2.9e-42 176.8 209 54.1
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 4.2e-41 172.9 199 53.8
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.1e-40 170.6 202 53.5
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 1.3e-39 167.9 217 49.3
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 6.7e-39 165.6 155 61.9
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.5e-38 164.5 215 53.0
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.1e-36 158.3 202 50.0
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 9.0e-36 155.2 164 56.7
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 1.2e-35 154.8 210 48.6
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 5.8e-35 152.5 336 40.2
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 2.5e-33 147.1 238 45.0
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 3.5e-32 143.3 303 41.3
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 8.7e-31 138.7 361 36.3
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 2.7e-24 117.1 135 50.4
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.2e-21 107.5 191 43.5
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 2.0e-19 100.9 142 42.3
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 4.5e-19 99.8 205 41.5
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 2.5e-17 94.0 105 53.3
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 6.7e-15 85.9 87 58.6
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 3.3e-14 83.6 93 58.1
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 1.4e-09 68.2 146 36.3
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.7e-08 63.9 87 54.0
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 1.0e-07 62.0 212 28.8
Gohir.D03G068600 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.0e-07 62.0 87 52.9
Gorai.007G212000 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.4e-07 61.6 87 52.9
Gorai.003G091900 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.3e-07 60.8 87 52.9


User provided reference genes

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