Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000519g0390 Nicotiana tabacum HOM05D011017 ORTHO05D005406 6.1e-194 680.6 343 100.0
Nitab4.5_0000416g0060 Nicotiana tabacum HOM05D011017 ORTHO05D009561 3.9e-92 342.4 225 79.1
Nitab4.5_0002901g0050 Nicotiana tabacum HOM05D001087 ORTHO05D005406 2.4e-33 147.1 100 77.0
CAN.G473.167 Capsicum annuum HOM05D001087 ORTHO05D005406 5.1e-31 139.4 91 78.0
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 6.6e-31 139.0 91 78.0
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 6.6e-31 139.0 91 78.0
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 1.2e-29 134.8 72 90.3
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 1.6e-29 134.4 79 82.3
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 8.1e-29 132.1 83 80.7
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 1.1e-28 131.7 73 86.3
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 3.1e-28 130.2 94 71.3
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 4.0e-28 129.8 92 72.8
FAN05G2313 Fragaria x ananassa HOM05D001087 ORTHO05D005406 5.2e-28 129.4 73 87.7
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 8.9e-28 128.6 73 86.3
FAN14G5433 Fragaria x ananassa HOM05D001087 ORTHO05D005406 8.9e-28 128.6 73 86.3
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 8.9e-28 128.6 73 86.3
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 8.9e-28 128.6 73 84.9
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 2.6e-27 127.1 73 83.6
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 3.4e-27 126.7 83 79.5
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 3.4e-27 126.7 83 79.5
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 3.4e-27 126.7 83 79.5
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 3.4e-27 126.7 83 79.5
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 4.4e-27 126.3 72 88.9
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 4.4e-27 126.3 91 73.6
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 5.8e-27 125.9 73 80.8
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 9.9e-27 125.2 79 78.5
Peaxi162Scf00420g00945 Petunia axillaris HOM05D001087 ORTHO05D005406 9.9e-27 125.2 73 89.0
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 2.2e-26 124.0 73 80.8
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 2.2e-26 124.0 83 75.9
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 3.8e-26 123.2 99 67.7
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 3.8e-26 123.2 73 82.2
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 6.4e-26 122.5 73 80.8
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 8.4e-26 122.1 74 83.8
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 8.4e-26 122.1 73 79.5
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 8.4e-26 122.1 81 80.2
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 1.1e-25 121.7 95 69.5
Cpa.g.sc70.26 Carica papaya HOM05D001087 ORTHO05D005406 1.4e-25 121.3 73 83.6
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 1.4e-25 121.3 80 81.2
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 1.9e-25 120.9 73 83.6
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 3.2e-25 120.2 91 70.3
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 5.4e-25 119.4 73 79.5
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 5.4e-25 119.4 73 79.5
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 7.1e-25 119.0 83 74.7
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 9.3e-25 118.6 91 68.1
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 9.3e-25 118.6 91 68.1
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 9.3e-25 118.6 77 79.2
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 9.3e-25 118.6 77 79.2
Eucgr.H05015 Eucalyptus grandis HOM05D001087 ORTHO05D005406 9.3e-25 118.6 73 82.2
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 9.3e-25 118.6 73 78.1
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 1.2e-24 118.2 73 79.5
ClCG05G012380 Citrullus lanatus HOM05D001087 ORTHO05D005406 2.1e-24 117.5 76 80.3
Peaxi162Scf00082g00223 Petunia axillaris HOM05D001087 ORTHO05D005406 2.1e-24 117.5 69 87.0
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 2.7e-24 117.1 77 77.9
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 4.6e-24 116.3 92 67.4
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 6.0e-24 115.9 69 81.2
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 6.0e-24 115.9 73 76.7
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 1.3e-23 114.8 73 76.7
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 1.7e-23 114.4 73 76.7
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 1.7e-23 114.4 73 76.7
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 1.7e-23 114.4 89 67.4
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 3.0e-23 113.6 73 80.8
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 3.9e-23 113.2 74 77.0
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 3.9e-23 113.2 83 72.3
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 3.9e-23 113.2 73 75.3
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 5.1e-23 112.8 72 76.4
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 6.6e-23 112.5 73 75.3
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 6.6e-23 112.5 73 76.7
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 8.7e-23 112.1 74 75.7
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 8.7e-23 112.1 74 77.0
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 8.7e-23 112.1 73 76.7
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 1.1e-22 111.7 91 64.8
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 2.5e-22 110.5 73 75.3
Haze_14336 Corylus avellana HOM05D001087 ORTHO05D005406 2.5e-22 110.5 84 71.4
HPP92_021715 Vanilla planifolia HOM05D001087 ORTHO05D005406 5.6e-22 109.4 73 74.0
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 7.3e-22 109.0 89 66.3
SMO353G0092 Selaginella moellendorffii HOM05D001087 ORTHO05D005406 1.6e-21 107.8 73 75.3
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 1.6e-21 107.8 78 71.8
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 2.8e-21 107.1 79 72.2
Nitab4.5_0004378g0060 Nicotiana tabacum HOM05D011017 ORTHO05D283478 2.8e-21 107.1 106 54.7
SEGI_33424 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 3.6e-21 106.7 77 71.4
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 4.0e-20 103.2 84 64.3
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 4.0e-20 103.2 84 64.3
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 9.0e-20 102.1 73 71.2
Nitab4.5_0001980g0110 Nicotiana tabacum HOM05D026322 ORTHO05D286377 1.2e-19 101.7 220 36.4
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 2.0e-19 100.9 73 69.9
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.6e-19 100.5 75 68.0
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 4.4e-19 99.8 73 68.5
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 9.9e-19 98.6 72 68.1
CARHR013280 Cardamine hirsuta HOM05D001087 ORTHO05D005406 9.9e-19 98.6 73 67.1
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 1.3e-18 98.2 73 68.5
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 1.3e-18 98.2 73 68.5
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 1.3e-18 98.2 73 68.5
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 1.3e-18 98.2 73 68.5
FAN03G2103 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.2e-18 97.4 57 80.7
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 2.2e-18 97.4 73 68.5
FAN04G2467 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.9e-18 97.1 55 83.6
FAN25G2039 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.9e-18 97.1 55 83.6
Nitab4.5_0011661g0020 Nicotiana tabacum HOM05D011017 ORTHO05D286901 2.9e-18 97.1 188 37.8
Nitab4.5_0000710g0090 Nicotiana tabacum HOM05D011017 ORTHO05D284944 4.9e-18 96.3 78 64.1
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 8.4e-18 95.5 73 67.1
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 8.4e-18 95.5 73 67.1
Nitab4.5_0001996g0050 Nicotiana tabacum HOM05D011017 ORTHO05D285577 8.4e-18 95.5 88 61.4
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 3.2e-17 93.6 72 66.7
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 3.2e-17 93.6 72 66.7
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 4.2e-17 93.2 70 62.9
Nitab4.5_0002134g0030 Nicotiana tabacum HOM05D011017 ORTHO05D286241 1.6e-16 91.3 91 54.9
GSVIVG01031683001 Vitis vinifera HOM05D006947 ORTHO05D005406 1.6e-16 91.3 53 83.0
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.1e-16 90.9 98 53.1
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.1e-16 90.9 98 53.1
Nitab4.5_0002304g0060 Nicotiana tabacum HOM05D011017 ORTHO05D283230 1.3e-15 88.2 98 43.9
Nitab4.5_0001967g0050 Nicotiana tabacum HOM05D011017 ORTHO05D285625 1.7e-15 87.8 74 60.8
Nitab4.5_0003745g0040 Nicotiana tabacum HOM05D011017 ORTHO05D282784 3.9e-15 86.7 215 34.9
Nitab4.5_0001488g0010 Nicotiana tabacum HOM05D011017 ORTHO05D282946 1.5e-14 84.7 122 47.5
Nitab4.5_0000216g0200 Nicotiana tabacum HOM05D011017 ORTHO05D285085 5.6e-14 82.8 224 32.6
Nitab4.5_0000908g0080 Nicotiana tabacum HOM05D011017 ORTHO05D286372 7.3e-14 82.4 141 41.1
Nitab4.5_0004844g0010 Nicotiana tabacum HOM05D026322 ORTHO05D285021 9.6e-14 82.0 180 37.2
FAN04G2314 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.1e-13 80.9 40 95.0
Nitab4.5_0014776g0020 Nicotiana tabacum HOM05D011017 ORTHO05D285138 2.8e-13 80.5 106 44.3
Nitab4.5_0001225g0270 Nicotiana tabacum HOM05D000128 ORTHO05D000059 1.4e-12 78.2 78 52.6
Nitab4.5_0005700g0070 Nicotiana tabacum HOM05D011017 ORTHO05D286224 7.6e-11 72.4 91 45.1
Sopen11g025280 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-09 68.6 218 34.4
Nitab4.5_0000174g0200 Nicotiana tabacum HOM05D000102 ORTHO05D000138 5.4e-09 66.2 123 41.5
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 9.3e-09 65.5 75 45.3
Nitab4.5_0000265g0080 Nicotiana tabacum HOM05D011017 ORTHO05D284469 1.2e-08 65.1 46 71.7
Peaxi162Scf00281g00315 Petunia axillaris HOM05D001087 ORTHO05D005406 2.3e-07 60.8 73 54.8
Sopen03g015220 Solanum pennellii HOM05D000004 ORTHO05D000002 3.0e-07 60.5 205 33.7
CBR_g30317 Chara braunii HOM05D001087 ORTHO05D005406 5.1e-07 59.7 69 46.4
Sopen02g018880 Solanum pennellii HOM05D000004 ORTHO05D000048 6.7e-07 59.3 212 33.5
Peaxi162Scf00056g00012 Petunia axillaris HOM05D023338 ORTHO05D009561 1.1e-06 58.5 132 33.3


User provided reference genes

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