Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.0e-183 646.7 359 100.0
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 5.8e-163 577.8 361 91.7
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 1.5e-147 526.6 389 82.0
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 1.5e-147 526.6 389 82.0
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 6.1e-144 514.6 373 82.6
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 2.0e-142 509.6 375 81.6
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 8.8e-135 484.2 328 81.4
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 4.4e-134 481.9 330 80.6
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 7.4e-134 481.1 330 80.3
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 2.8e-133 479.2 331 80.1
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 2.4e-132 476.1 361 79.2
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 2.4e-132 476.1 361 79.5
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 1.2e-131 473.8 324 80.6
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 1.5e-131 473.4 326 79.8
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 3.5e-131 472.2 334 78.4
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 5.9e-131 471.5 393 74.3
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 3.8e-130 468.8 364 73.4
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 8.5e-130 467.6 330 76.7
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 1.4e-129 466.8 372 74.7
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 1.9e-129 466.5 363 76.9
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 2.7e-128 462.6 330 76.1
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 2.7e-128 462.6 330 76.4
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 2.7e-128 462.6 325 78.5
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 1.0e-127 460.7 339 76.1
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 1.0e-127 460.7 323 78.3
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 1.0e-127 460.7 370 71.1
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 1.8e-127 459.9 340 75.6
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 2.3e-127 459.5 333 77.8
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 3.0e-127 459.1 321 78.2
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 3.9e-127 458.8 333 77.2
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 5.2e-127 458.4 331 76.7
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 6.7e-127 458.0 324 78.4
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 8.8e-127 457.6 329 78.1
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 2.0e-126 456.4 327 77.1
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 1.3e-125 453.8 382 71.7
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 2.2e-125 453.0 359 72.1
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 3.7e-125 452.2 402 70.4
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 4.8e-125 451.8 384 71.9
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 3.1e-124 449.1 324 75.9
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 2.0e-123 446.4 323 73.7
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 2.6e-123 446.0 331 75.8
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 3.5e-123 445.7 379 71.8
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 5.9e-123 444.9 331 74.3
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 1.3e-122 443.7 330 75.5
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 2.9e-122 442.6 330 74.8
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 1.1e-121 440.7 324 74.7
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 1.1e-121 440.7 381 67.2
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 1.5e-121 440.3 365 71.0
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 3.2e-121 439.1 320 74.7
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 5.5e-121 438.3 332 74.7
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 7.2e-121 438.0 366 69.9
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 9.4e-121 437.6 371 73.6
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 9.4e-121 437.6 371 73.6
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 2.7e-120 436.0 361 68.4
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 4.7e-120 435.3 385 69.6
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 8.0e-120 434.5 332 75.0
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 2.3e-119 433.0 323 74.9
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 3.0e-119 432.6 334 73.1
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 6.7e-119 431.4 400 68.8
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 1.5e-118 430.3 313 74.8
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 1.5e-118 430.3 263 85.2
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 2.0e-118 429.9 263 85.2
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 4.4e-118 428.7 341 71.0
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 5.7e-118 428.3 397 67.5
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 7.5e-118 427.9 375 72.5
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 9.7e-118 427.6 329 72.6
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 2.2e-117 426.4 326 74.8
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 3.7e-117 425.6 382 67.8
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 6.3e-117 424.9 381 68.8
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 1.1e-116 424.1 324 71.9
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 4.1e-116 422.2 329 71.7
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 5.3e-116 421.8 388 68.0
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 1.2e-115 420.6 368 66.3
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 5.9e-115 418.3 325 70.8
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 1.0e-114 417.5 367 65.9
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 5.0e-114 415.2 366 64.8
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 8.5e-114 414.5 331 70.1
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 8.5e-114 414.5 381 70.3
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 5.5e-113 411.8 329 69.3
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 7.2e-113 411.4 329 69.3
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 9.4e-113 411.0 327 69.7
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 1.2e-112 410.6 328 69.5
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 2.1e-112 409.8 420 60.2
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 1.0e-111 407.5 329 69.3
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 3.0e-111 406.0 334 68.0
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 8.8e-111 404.4 333 67.6
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 1.2e-110 404.1 336 68.2
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 2.0e-110 403.3 337 68.0
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 1.3e-109 400.6 337 65.9
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 1.6e-107 393.7 331 67.4
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 4.5e-107 392.1 325 71.7
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 5.0e-106 388.7 329 70.2
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 3.3e-105 386.0 301 72.4
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 3.6e-104 382.5 239 82.4
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 5.2e-103 378.6 365 67.1
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 2.6e-102 376.3 246 78.9
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 5.7e-102 375.2 384 63.8
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 8.3e-101 371.3 365 66.8
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 8.3e-93 344.7 323 59.1
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 1.4e-92 344.0 268 64.6
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 5.4e-92 342.0 269 64.7
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.3e-90 337.4 227 79.7
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 1.1e-89 334.3 267 63.7
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 1.5e-89 334.0 403 56.6
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 2.1e-88 330.1 268 63.1
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 4.7e-88 328.9 307 58.3
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 4.7e-88 328.9 307 58.3
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 4.7e-88 328.9 286 65.0
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 6.0e-83 312.0 366 54.4
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 3.3e-81 306.2 249 69.9
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 1.2e-80 304.3 350 50.6
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 8.9e-79 298.1 260 58.1
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 4.9e-77 292.4 329 51.1
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 6.4e-77 292.0 324 57.4
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 8.9e-71 271.6 257 70.0
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.5e-70 270.8 168 86.9
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 9.9e-70 268.1 326 54.6
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 2.1e-67 260.4 214 67.3
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.3e-53 214.5 238 50.8
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.1e-49 201.4 218 61.9
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.2e-46 191.4 202 66.8
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.4e-30 136.7 112 70.5
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 4.6e-27 126.3 76 78.9
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 3.7e-24 116.7 224 36.2
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 3.2e-20 103.6 101 64.4
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 1.8e-18 97.8 279 30.8
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 1.1e-17 95.1 62 69.4
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 2.6e-17 94.0 113 45.1
BcaC03g16356 Brassica carinata HOM05D029489 ORTHO05D007262 2.0e-06 57.8 38 68.4


User provided reference genes

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