Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000489g0030 Nicotiana tabacum HOM05D002984 ORTHO05D003561 1.5e-59 232.6 115 100.0
CAN.G2.31 Capsicum annuum HOM05D002984 ORTHO05D003561 8.4e-47 190.3 105 87.6
Migut.E00313 Erythranthe guttata HOM05D002984 ORTHO05D003561 5.4e-46 187.6 106 83.0
TAR622G0040 Trochodendron aralioides HOM05D002984 ORTHO05D003561 2.3e-44 182.2 109 77.1
Sopen12g027160 Solanum pennellii HOM05D002984 ORTHO05D003561 1.1e-43 179.9 105 81.9
Solyc12g070100.2 Solanum lycopersicum HOM05D002984 ORTHO05D003561 1.9e-43 179.1 105 81.0
COL.COLO4_07881 Corchorus olitorius HOM05D002984 ORTHO05D003561 2.5e-43 178.7 109 75.2
MELO3C012221.2 Cucumis melo HOM05D002984 ORTHO05D003561 2.5e-43 178.7 109 75.2
CsaV3_5G034050 Cucumis sativus L. HOM05D002984 ORTHO05D003561 2.5e-43 178.7 109 75.2
Gohir.A13G053428 Gossypium hirsutum HOM05D002984 ORTHO05D003561 2.5e-43 178.7 109 76.1
Gorai.013G080300 Gossypium raimondii HOM05D002984 ORTHO05D003561 2.5e-43 178.7 109 76.1
GSVIVG01011939001 Vitis vinifera HOM05D002984 ORTHO05D003561 3.3e-43 178.3 109 73.4
Cc11_g10490 Coffea canephora HOM05D002984 ORTHO05D003561 4.3e-43 177.9 107 74.8
Prupe.1G306600 Prunus persica HOM05D002984 ORTHO05D003561 4.3e-43 177.9 113 74.3
Duzib251G0734 Durio zibethinus HOM05D002984 ORTHO05D003561 5.6e-43 177.6 109 76.1
Thecc.02G359700 Theobroma cacao HOM05D002984 ORTHO05D003561 9.6e-43 176.8 109 74.3
vmacro10537 Vaccinium macrocarpon HOM05D002984 ORTHO05D003561 9.6e-43 176.8 109 72.5
Hma1.2p1_0030F.1_g018360 Hydrangea macrophylla HOM05D002984 ORTHO05D003561 1.6e-42 176.0 110 73.6
Gohir.D13G070100 Gossypium hirsutum HOM05D002984 ORTHO05D003561 2.1e-42 175.6 109 75.2
Manes.14G098600 Manihot esculenta HOM05D002984 ORTHO05D003561 2.8e-42 175.3 109 73.4
Lj6C764G10 Lonicera japonica HOM05D002984 ORTHO05D003561 3.6e-42 174.9 109 77.1
Potri.008G117700 Populus trichocarpa HOM05D002984 ORTHO05D003561 3.6e-42 174.9 109 74.3
Actinidia14860 Actinidia chinensis HOM05D002984 ORTHO05D003561 4.8e-42 174.5 109 73.4
Sabra10G0097800 Salix brachista HOM05D002984 ORTHO05D003561 4.8e-42 174.5 109 74.3
Dinv21122 Davidia involucrata HOM05D002984 ORTHO05D003561 8.1e-42 173.7 113 71.7
Sed0009737 Sechium edule HOM05D002984 ORTHO05D003561 1.4e-41 172.9 109 71.6
Lalb_Chr17g0341951 Lupinus albus HOM05D002984 ORTHO05D003561 3.1e-41 171.8 109 71.6
SGA_v2.0_scaffold14G06838 Striga asiatica HOM05D002984 ORTHO05D003561 9.0e-41 170.2 109 74.3
Gohir.A03G097900 Gossypium hirsutum HOM05D002984 ORTHO05D003561 1.2e-40 169.9 109 72.5
Gohir.D02G115800 Gossypium hirsutum HOM05D002984 ORTHO05D003561 1.2e-40 169.9 109 72.5
Gorai.005G138200 Gossypium raimondii HOM05D002984 ORTHO05D003561 1.2e-40 169.9 109 72.5
Potri.010G128600 Populus trichocarpa HOM05D002984 ORTHO05D003561 1.2e-40 169.9 109 73.4
MD16G1046800 Malus domestica HOM05D002984 ORTHO05D003561 1.5e-40 169.5 113 73.5
FvH4_4g27961 Fragaria vesca HOM05D002984 ORTHO05D003561 2.0e-40 169.1 113 67.3
FAN12G2547 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.0e-40 169.1 113 67.3
Glyma.02G098300 Glycine max HOM05D002984 ORTHO05D003561 2.0e-40 169.1 109 70.6
FAN22G1846 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.6e-40 168.7 113 67.3
Nn4g23754 Nelumbo nucifera HOM05D002984 ORTHO05D003561 2.6e-40 168.7 109 71.6
RcHm_v2.0_Chr4g0435671 Rosa chinensis HOM05D002984 ORTHO05D003561 2.6e-40 168.7 109 71.6
Lj2g0026621 Lotus japonicus HOM05D002984 ORTHO05D003561 3.4e-40 168.3 110 70.0
Ciclev10030710m.g Citrus clementina HOM05D002984 ORTHO05D003561 4.5e-40 167.9 109 71.6
Aa31LG7G8960 Aethionema arabicum HOM05D002984 ORTHO05D003561 9.9e-40 166.8 110 69.1
Atru.chr11.1335 Acer truncatum HOM05D002984 ORTHO05D003561 1.3e-39 166.4 109 69.7
CANSAT64G2157 Cannabis sativa HOM05D002984 ORTHO05D003561 1.3e-39 166.4 109 70.6
Lj2g0022832 Lotus japonicus HOM05D002984 ORTHO05D003561 1.3e-39 166.4 109 68.8
PSO017G4771 Papaver somniferum HOM05D002984 ORTHO05D003561 1.3e-39 166.4 109 68.8
PSO478G2088 Papaver somniferum HOM05D002984 ORTHO05D003561 1.3e-39 166.4 109 68.8
MD16G1047200 Malus domestica HOM05D002984 ORTHO05D003561 1.7e-39 166.0 113 71.7
Psat2g101040 Pisum sativum HOM05D002984 ORTHO05D003561 1.7e-39 166.0 110 69.1
DCAR_026720 Daucus carota HOM05D002984 ORTHO05D003561 2.2e-39 165.6 109 72.5
Lj2g0024103 Lotus japonicus HOM05D002984 ORTHO05D003561 2.2e-39 165.6 109 68.8
Atru.chr11.1338 Acer truncatum HOM05D002984 ORTHO05D003561 2.9e-39 165.2 109 68.8
arahy.Tifrunner.gnm1.ann1.IQF6NS Arachis hypogaea HOM05D002984 ORTHO05D003561 2.9e-39 165.2 109 68.8
CSS0023076 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 2.9e-39 165.2 100 74.0
CiPaw.16G003700 Carya illinoinensis HOM05D002984 ORTHO05D003561 2.9e-39 165.2 109 68.8
Aqoxy3G00352 Aquilegia oxysepala HOM05D002984 ORTHO05D003561 3.8e-39 164.9 109 68.8
arahy.Tifrunner.gnm1.ann1.X8TPQJ Arachis hypogaea HOM05D002984 ORTHO05D003561 3.8e-39 164.9 109 67.9
CiPaw.16G003900 Carya illinoinensis HOM05D002984 ORTHO05D003561 3.8e-39 164.9 108 69.4
CSS0018296 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 4.9e-39 164.5 100 74.0
Nitab4.5_0005194g0020 Nicotiana tabacum HOM05D002984 ORTHO05D003561 1.1e-38 163.3 105 71.4
THA.LOC104808226 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 1.1e-38 163.3 109 69.7
Medtr5g054680 Medicago truncatula HOM05D002984 ORTHO05D003561 1.9e-38 162.5 109 67.9
Lalb_Chr10g0099841 Lupinus albus HOM05D002984 ORTHO05D003561 2.4e-38 162.2 109 67.0
Phvul.003G028300 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 2.4e-38 162.2 109 67.9
Lsat_1_v5_gn_4_19001 Lactuca sativa HOM05D002984 ORTHO05D003561 3.2e-38 161.8 110 69.1
Sp1g22670 Schrenkiella parvula HOM05D002984 ORTHO05D003561 3.2e-38 161.8 106 70.8
Thhalv10006778m.g Eutrema salsugineum HOM05D002984 ORTHO05D003561 5.5e-38 161.0 106 71.7
PGR142G0084 Punica granatum HOM05D002984 ORTHO05D003561 7.1e-38 160.6 109 70.6
TWI79G1384 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 9.3e-38 160.2 110 69.1
Carub.0001s2494 Capsella rubella HOM05D002984 ORTHO05D003561 1.2e-37 159.8 106 69.8
THA.LOC104821957 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 1.2e-37 159.8 109 70.6
A08p27060 Brassica napus HOM05D002984 ORTHO05D003561 1.6e-37 159.5 106 69.8
PGR142G1725 Punica granatum HOM05D002984 ORTHO05D003561 1.6e-37 159.5 109 69.7
TPR.G38317 Trifolium pratense HOM05D002984 ORTHO05D003561 1.6e-37 159.5 109 66.1
A09p39560 Brassica napus HOM05D002984 ORTHO05D003561 2.1e-37 159.1 106 69.8
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 2.1e-37 159.1 106 69.8
HanXRQChr16g0529571 Helianthus annuus HOM05D002984 ORTHO05D003561 2.1e-37 159.1 110 67.3
AL1G39760 Arabidopsis lyrata HOM05D002984 ORTHO05D003561 2.7e-37 158.7 106 68.9
AT1G25540 Arabidopsis thaliana HOM05D002984 ORTHO05D003561 2.7e-37 158.7 106 68.9
C03p72840 Brassica napus HOM05D002984 ORTHO05D003561 2.7e-37 158.7 106 69.8
C05p24920 Brassica napus HOM05D002984 ORTHO05D003561 2.7e-37 158.7 106 69.8
CARHR025920 Cardamine hirsuta HOM05D002984 ORTHO05D003561 2.7e-37 158.7 106 68.9
BcaC01g01711 Brassica carinata HOM05D002984 ORTHO05D003561 3.5e-37 158.3 106 68.9
Oeu041887.1 Olea europaea HOM05D002984 ORTHO05D003561 6.0e-37 157.5 109 67.9
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 6.0e-37 157.5 129 62.8
BcaC05g26443 Brassica carinata HOM05D002984 ORTHO05D003561 1.3e-36 156.4 106 68.9
BolC5t31221H Brassica oleracea HOM05D002984 ORTHO05D003561 1.3e-36 156.4 106 68.9
MBI01_g32855_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 1.3e-36 156.4 118 65.3
TWI31G1103 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 1.3e-36 156.4 110 67.3
Ca_19808_v3 Cicer arietinum L. HOM05D002984 ORTHO05D003561 1.8e-36 156.0 109 62.4
VMungo1215G2122 Vigna mungo HOM05D002984 ORTHO05D003561 3.0e-36 155.2 109 63.3
BraA08t34651Z Brassica rapa HOM05D002984 ORTHO05D003561 3.9e-36 154.8 107 69.2
ECA234G4415 Erigeron canadensis HOM05D002984 ORTHO05D003561 3.9e-36 154.8 106 68.9
Cpa.g.sc1.211 Carica papaya HOM05D002984 ORTHO05D003561 6.7e-36 154.1 122 59.0
Lsat_1_v5_gn_3_60001 Lactuca sativa HOM05D002984 ORTHO05D003561 8.7e-36 153.7 110 66.4
HPP92_024319 Vanilla planifolia HOM05D002984 ORTHO05D003561 1.9e-35 152.5 107 65.4
Rhsim09G0111200 Rhododendron simsii HOM05D002984 ORTHO05D000550 3.3e-35 151.8 161 50.9
Glyma.02G098500 Glycine max HOM05D002984 ORTHO05D003561 4.3e-35 151.4 109 65.1
Peaxi162Scf00004g01519 Petunia axillaris HOM05D002984 ORTHO05D003561 7.4e-35 150.6 80 91.2
BolC3t19582H Brassica oleracea HOM05D002984 ORTHO05D003561 9.6e-35 150.2 122 61.5
Eucgr.D01061 Eucalyptus grandis HOM05D002984 ORTHO05D003561 1.3e-34 149.8 107 63.6
ATR0681G393 Amborella trichopoda HOM05D002984 ORTHO05D003561 2.1e-34 149.1 109 60.6
Sabra08G0089300 Salix brachista HOM05D002984 ORTHO05D003561 2.1e-34 149.1 164 50.0
SHI14503 Sapria himalayana HOM05D002984 ORTHO05D003561 2.1e-34 149.1 109 64.2
EL10Ac3g05929 Beta vulgaris HOM05D002984 ORTHO05D003561 2.8e-34 148.7 113 62.8
Glyma.01G086600 Glycine max HOM05D002984 ORTHO05D003561 3.7e-34 148.3 109 65.1
AUR62015392 Chenopodium quinoa HOM05D002984 ORTHO05D003561 4.8e-34 147.9 115 64.3
Ah.13g072880 Amaranthus hybridus HOM05D002984 ORTHO05D003561 8.1e-34 147.1 112 60.7
Sc25g0002400 Simmondsia chinensis HOM05D002984 ORTHO05D003561 1.8e-33 146.0 114 60.5
FvH4_6g01630 Fragaria vesca HOM05D002984 ORTHO05D003561 3.1e-33 145.2 115 62.6
Os09g0306700 Oryza sativa ssp. japonica HOM05D002984 ORTHO05D003561 4.0e-33 144.8 108 60.2
FvH4_5g05460 Fragaria vesca HOM05D002984 ORTHO05D003561 5.3e-33 144.4 116 61.2
HanXRQChr17g0552241 Helianthus annuus HOM05D002984 ORTHO05D003561 2.0e-32 142.5 106 62.3
FAN13G2905 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.6e-32 142.1 113 60.2
Haze_17450 Corylus avellana HOM05D002984 ORTHO05D003561 1.0e-31 140.2 183 43.7
Pp3c25_2660 Physcomitrium patens HOM05D002984 ORTHO05D003561 1.3e-31 139.8 110 58.2
MBI01_g09372_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 2.2e-31 139.0 85 74.1
Nitab4.5_0000672g0110 Nicotiana tabacum HOM05D002984 ORTHO05D003561 2.7e-29 132.1 105 63.8
SMO118G0238 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 1.0e-28 130.2 104 56.7
Medtr1g013000 Medicago truncatula HOM05D002984 ORTHO05D003561 3.9e-28 128.3 109 55.0
FAN03G1604 Fragaria x ananassa HOM05D002984 ORTHO05D003561 6.7e-28 127.5 108 59.3
Dinv40427 Davidia involucrata HOM05D002984 ORTHO05D003561 1.5e-27 126.3 109 50.5
SEGI_39328 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 7.4e-27 124.0 103 57.3
Solyc05g009710.4 Solanum lycopersicum HOM05D002984 ORTHO05D003561 3.7e-26 121.7 118 53.4
Mapoly0022s0114 Marchantia polymorpha HOM05D002984 ORTHO05D003561 6.3e-26 120.9 108 51.9
FAN04G1620 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.4e-25 119.8 113 55.8
FvH4_5g12610 Fragaria vesca HOM05D002984 ORTHO05D003561 1.8e-25 119.4 113 55.8
FAN18G0496 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.8e-25 119.4 113 55.8
FAN18G2176 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.8e-25 119.4 113 55.8
QL01p044747 Quercus lobata HOM05D002984 ORTHO05D003561 9.0e-25 117.1 76 71.1
FAN10G3298 Fragaria x ananassa HOM05D002984 ORTHO05D003561 3.4e-24 115.2 109 54.1
QL10p023599 Quercus lobata HOM05D002984 ORTHO05D003561 7.6e-24 114.0 106 52.8
Lj9A429G49 Lonicera japonica HOM05D002984 ORTHO05D003561 7.2e-22 107.5 112 42.9
Zm00001eb097890 Zea mays HOM05D002984 ORTHO05D003561 1.6e-21 106.3 108 49.1
SMO340G0161 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 5.1e-20 101.3 103 52.4
Actinidia39817 Actinidia chinensis HOM05D002984 ORTHO05D003561 6.7e-20 100.9 108 45.4
Hund03157 Selenicereus undatus HOM05D002984 ORTHO05D003561 6.7e-20 100.9 114 47.4
FAN18G2442 Fragaria x ananassa HOM05D002984 ORTHO05D003561 5.7e-19 97.8 116 48.3
FAN18G3612 Fragaria x ananassa HOM05D002984 ORTHO05D003561 5.7e-19 97.8 116 48.3
AUR62002298 Chenopodium quinoa HOM05D002984 ORTHO05D003561 1.3e-18 96.7 82 57.3
SMO356G0715 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 1.8e-17 92.8 108 47.2
BcaC05g26654 Brassica carinata HOM05D002984 ORTHO05D003561 2.4e-17 92.4 60 68.3
Lalb_Chr11g0074771 Lupinus albus HOM05D002984 ORTHO05D003561 2.9e-15 85.5 119 40.3
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 2.9e-15 85.5 110 40.0
Oeu010774.1 Olea europaea HOM05D002984 ORTHO05D003561 3.8e-15 85.1 47 76.6
Sabra02G0035000 Salix brachista HOM05D002984 ORTHO05D003561 1.4e-14 83.2 44 81.8
SalBow8G0674 Salvia bowleyana HOM05D002984 ORTHO05D003561 1.9e-14 82.8 127 45.7
Lj6C762G14 Lonicera japonica HOM05D002984 ORTHO05D003561 2.5e-14 82.4 108 43.5
FAN13G1615 Fragaria x ananassa HOM05D002984 ORTHO05D003561 3.2e-14 82.0 112 44.6
Cpa.g.sc13.36 Carica papaya HOM05D002984 ORTHO05D003561 7.2e-14 80.9 70 50.0
ECA246G1507 Erigeron canadensis HOM05D002984 ORTHO05D003561 1.2e-13 80.1 93 41.9
VMungo0464G0094 Vigna mungo HOM05D002984 ORTHO05D014229 6.1e-13 77.8 110 37.3
Lsat_1_v5_gn_4_19021 Lactuca sativa HOM05D002984 ORTHO05D003561 1.0e-12 77.0 48 72.9
PGSC0003DMG401000817 Solanum tuberosum HOM05D002984 ORTHO05D003561 1.4e-12 76.6 43 72.1
Glyma.20G031800 Glycine max HOM05D002984 ORTHO05D014229 1.8e-12 76.3 108 37.0
Lalb_Chr14g0371321 Lupinus albus HOM05D002984 ORTHO05D003561 1.5e-11 73.2 104 38.5
VMungo0251G1889 Vigna mungo HOM05D002984 ORTHO05D003561 5.7e-11 71.2 108 38.9
arahy.Tifrunner.gnm1.ann1.48S2GI Arachis hypogaea HOM05D002984 ORTHO05D003561 4.8e-10 68.2 109 33.0
Medtr6g085100 Medicago truncatula HOM05D002984 ORTHO05D022868 4.8e-10 68.2 106 36.8
arahy.Tifrunner.gnm1.ann1.53ZNG0 Arachis hypogaea HOM05D002984 ORTHO05D003561 6.3e-10 67.8 109 33.0
Lj2g0016414 Lotus japonicus HOM05D002984 ORTHO05D022868 1.1e-09 67.0 110 36.4
Medtr6g085080 Medicago truncatula HOM05D002984 ORTHO05D022868 4.1e-09 65.1 106 35.8
Psat1g039440 Pisum sativum HOM05D002984 ORTHO05D022868 6.9e-09 64.3 106 32.1
Sc04g0003680 Simmondsia chinensis HOM05D002984 ORTHO05D003561 9.1e-09 63.9 87 39.1
AUR62034349 Chenopodium quinoa HOM05D000091 ORTHO05D001510 1.2e-08 63.5 72 51.4
TPR.G31455 Trifolium pratense HOM05D002984 ORTHO05D022868 1.2e-08 63.5 106 32.1
Peaxi162Scf00004g01513 Petunia axillaris HOM05D002984 ORTHO05D003561 2.6e-08 62.4 33 84.8
SGA_v2.0_scaffold124G33581 Striga asiatica HOM05D002984 ORTHO05D003561 5.9e-08 61.2 31 87.1
ECA246G2084 Erigeron canadensis HOM05D002984 ORTHO05D003561 1.3e-07 60.1 59 54.2
FAN08G0776 Fragaria x ananassa HOM05D002984 ORTHO05D003561 3.8e-07 58.5 68 45.6
Phvul.004G160500 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 3.8e-07 58.5 107 30.8
A09p35340 Brassica napus HOM05D000003 ORTHO05D000283 4.2e-06 55.1 67 43.3
FAN04G0139 Fragaria x ananassa HOM05D002984 ORTHO05D003561 5.5e-06 54.7 52 55.8
Pp3c25_2430 Physcomitrium patens HOM05D002984 ORTHO05D003561 5.5e-06 54.7 33 72.7
CAN.G674.44 Capsicum annuum HOM05D002984 ORTHO05D003561 9.4e-06 53.9 31 77.4


User provided reference genes

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