Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.4e-95 351.3 177 100.0
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 6.3e-94 347.4 177 98.9
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.2e-70 269.2 145 96.6
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 6.4e-70 267.7 145 95.9
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 6.4e-70 267.7 145 95.9
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 4.9e-62 241.5 145 82.8
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 5.4e-61 238.0 145 83.4
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 5.4e-61 238.0 145 83.4
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 4.0e-56 221.9 155 74.8
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.2e-55 220.3 155 72.9
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.5e-55 219.9 155 74.2
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.6e-55 219.2 155 73.5
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.4e-55 218.8 145 81.4
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 4.4e-55 218.4 155 74.2
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 4.4e-55 218.4 155 74.2
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 7.6e-55 217.6 144 77.8
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 7.6e-55 217.6 155 72.9
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 9.9e-55 217.2 155 73.5
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 9.9e-55 217.2 155 71.6
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 1.3e-54 216.9 156 72.4
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.3e-54 216.9 155 73.5
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 1.3e-54 216.9 155 71.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 4.9e-54 214.9 155 72.9
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 6.4e-54 214.5 157 71.3
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 8.3e-54 214.2 155 72.9
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 8.3e-54 214.2 157 73.2
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.1e-53 213.8 155 72.3
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 1.4e-53 213.4 155 72.3
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 1.4e-53 213.4 155 76.1
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 2.4e-53 212.6 155 72.3
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 4.1e-53 211.8 155 71.6
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 5.4e-53 211.5 145 79.3
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 5.4e-53 211.5 145 74.5
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 5.4e-53 211.5 155 71.0
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 7.1e-53 211.1 145 78.6
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 9.2e-53 210.7 154 70.1
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.2e-52 210.3 154 72.1
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.6e-52 209.9 155 71.6
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 2.7e-52 209.1 167 71.3
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 4.6e-52 208.4 154 69.5
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 4.6e-52 208.4 156 71.2
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 7.8e-52 207.6 154 72.1
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.3e-51 206.8 155 71.6
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 1.3e-51 206.8 154 68.8
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.7e-51 206.5 155 71.6
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.7e-51 206.5 145 78.6
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.3e-51 206.1 156 71.2
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 2.3e-51 206.1 156 71.8
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 5.1e-51 204.9 154 70.8
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 6.6e-51 204.5 145 77.9
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 6.6e-51 204.5 155 69.0
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 4.3e-50 201.8 156 68.6
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.6e-50 201.4 156 67.9
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 5.6e-50 201.4 156 67.9
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 9.6e-50 200.7 155 67.7
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.2e-49 200.3 155 69.7
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.6e-49 199.9 156 67.3
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 3.6e-49 198.7 141 74.5
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 4.7e-49 198.4 146 72.6
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 1.4e-48 196.8 156 67.3
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.8e-48 196.4 147 70.7
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 3.1e-48 195.7 151 72.2
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 5.2e-48 194.9 170 65.3
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 8.9e-48 194.1 151 69.5
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 2.0e-47 193.0 155 65.8
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.6e-47 192.6 155 64.5
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 7.6e-47 191.0 157 65.6
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 3.8e-46 188.7 158 65.2
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 4.9e-46 188.3 160 63.1
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.4e-45 186.0 144 70.8
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 3.2e-45 185.7 199 55.8
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 7.1e-45 184.5 149 68.5
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.2e-44 183.7 155 63.9
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.6e-44 183.3 154 65.6
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 2.1e-44 183.0 155 66.5
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 2.7e-44 182.6 155 63.2
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 6.0e-44 181.4 152 66.4
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 7.8e-44 181.0 155 65.8
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.0e-43 180.6 153 65.4
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.7e-43 179.9 220 49.1
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 5.1e-43 178.3 157 61.8
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.9e-42 176.4 152 67.1
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 3.3e-42 175.6 153 62.7
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 2.8e-41 172.6 155 58.7
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 2.8e-41 172.6 149 63.8
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.6e-41 172.2 151 62.3
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 6.2e-41 171.4 155 58.7
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 8.1e-41 171.0 153 62.7
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.4e-40 170.2 155 57.4
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.8e-40 169.9 128 71.1
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 2.4e-40 169.5 147 65.3
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.3e-40 168.3 162 55.6
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 6.9e-40 167.9 151 61.6
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 6.9e-40 167.9 154 61.0
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 9.0e-40 167.5 155 60.6
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.5e-39 166.8 158 60.8
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 1.5e-39 166.8 153 60.1
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.5e-39 166.8 154 60.4
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 2.6e-39 166.0 150 61.3
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 2.6e-39 166.0 155 61.3
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.6e-39 166.0 153 58.2
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.6e-39 166.0 153 58.2
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 2.6e-39 166.0 154 61.0
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 3.4e-39 165.6 151 64.2
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 5.8e-39 164.9 99 83.8
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.3e-38 163.7 154 60.4
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.2e-38 162.9 153 57.5
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.2e-38 162.9 155 54.2
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 4.9e-38 161.8 153 58.8
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 4.9e-38 161.8 155 56.8
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 8.4e-38 161.0 154 55.2
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 8.4e-38 161.0 153 56.9
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.9e-37 159.8 117 73.5
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.2e-37 158.7 152 57.9
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 5.4e-37 158.3 267 41.2
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.2e-36 157.1 182 53.8
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.1e-36 156.4 155 54.8
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.7e-36 156.0 155 54.8
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 4.6e-36 155.2 151 57.6
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 6.0e-36 154.8 180 53.3
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 7.9e-36 154.5 144 60.4
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 7.9e-36 154.5 144 60.4
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 7.9e-36 154.5 93 79.6
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 1.3e-35 153.7 151 55.6
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 2.3e-35 152.9 150 58.7
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 2.3e-35 152.9 150 58.7
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 2.3e-35 152.9 150 58.7
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 3.9e-35 152.1 166 51.2
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 5.1e-35 151.8 146 58.9
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 5.1e-35 151.8 151 56.3
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 8.7e-35 151.0 157 55.4
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 8.7e-35 151.0 93 78.5
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 3.3e-34 149.1 153 58.2
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 4.3e-34 148.7 129 63.6
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 9.6e-34 147.5 150 55.3
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 9.6e-34 147.5 114 69.3
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 1.6e-33 146.7 117 66.7
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 1.4e-32 143.7 150 53.3
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.4e-32 142.9 95 78.9
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 3.1e-32 142.5 153 52.3
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 4.0e-32 142.1 145 57.2
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 2.6e-31 139.4 96 71.9
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 4.5e-31 138.7 116 62.9
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 5.8e-31 138.3 75 94.7
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 5.8e-31 138.3 153 52.3
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 7.6e-31 137.9 141 55.3
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 1.7e-30 136.7 113 64.6
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 2.2e-30 136.3 142 54.2
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.8e-30 135.6 114 65.8
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.9e-29 133.3 144 52.8
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 7.1e-29 131.3 101 69.3
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 7.1e-29 131.3 102 64.7
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.3e-27 127.1 148 50.0
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.3e-27 126.3 174 46.6
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.3e-27 126.3 94 69.1
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.0e-27 125.9 156 46.2
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.9e-27 125.6 122 59.8
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 6.7e-27 124.8 122 63.1
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.7e-25 119.0 123 54.5
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 4.8e-25 118.6 92 65.2
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 5.8e-23 111.7 155 43.2
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 3.8e-22 109.0 145 50.3
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 7.9e-20 101.3 167 41.9
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 8.7e-19 97.8 75 64.0
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 6.2e-17 91.7 85 52.9
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 8.2e-17 91.3 89 58.4
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.1e-16 90.9 89 58.4
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 6.9e-16 88.2 89 58.4
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 7.6e-15 84.7 61 68.9
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 5.5e-13 78.6 52 73.1
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 5.1e-11 72.0 41 80.5
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.1e-10 70.9 63 52.4
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.3e-10 68.9 67 47.8
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.3e-10 68.9 45 71.1
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.3e-10 68.9 63 52.4
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 1.3e-09 67.4 63 52.4
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.8e-08 63.5 85 43.5
CAN.G215.18 Capsicum annuum HOM05D004104 ORTHO05D004755 2.6e-07 59.7 56 62.5
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 3.4e-07 59.3 62 54.8
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.3e-06 57.4 76 43.4


User provided reference genes

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