Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 8.0e-164 580.5 318 100.0
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.0e-142 510.4 315 88.6
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.0e-142 508.1 315 87.3
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 7.3e-141 504.2 315 86.0
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.6e-138 495.7 315 87.0
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 4.4e-138 495.0 315 86.3
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.2e-137 492.7 318 86.8
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.2e-137 492.7 315 85.1
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 3.7e-137 491.9 315 86.3
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 3.5e-135 485.3 315 83.5
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 3.3e-133 478.8 315 80.3
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 3.6e-132 475.3 315 82.5
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 4.7e-132 474.9 315 81.6
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.1e-131 473.8 315 80.0
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 4.0e-131 471.9 315 80.6
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 4.0e-131 471.9 316 82.0
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 7.5e-130 467.6 315 77.8
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.7e-129 466.5 315 79.0
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.4e-128 463.4 315 77.8
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.4e-128 463.4 315 80.0
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 1.9e-128 463.0 315 79.7
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.6e-127 459.9 316 77.8
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.6e-127 459.9 315 79.4
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 4.6e-127 458.4 309 78.6
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 6.0e-127 458.0 315 78.7
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.3e-126 456.8 315 76.5
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 2.3e-126 456.1 315 76.8
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.3e-126 456.1 315 78.4
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 6.6e-126 454.5 309 78.3
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.3e-125 452.2 315 76.8
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 4.3e-125 451.8 315 76.2
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 4.3e-125 451.8 344 73.0
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.6e-125 451.4 315 78.1
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.2e-124 450.3 315 74.3
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 2.1e-124 449.5 315 75.2
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 2.8e-124 449.1 315 76.8
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 6.8e-123 444.5 311 75.2
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 6.8e-123 444.5 317 74.4
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.2e-122 443.7 315 76.2
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.4e-122 442.2 315 75.9
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 7.5e-122 441.0 315 75.6
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 9.9e-122 440.7 315 75.6
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.3e-121 440.3 315 75.6
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 2.9e-121 439.1 315 75.6
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 6.4e-121 438.0 313 74.1
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 8.3e-121 437.6 315 73.3
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 9.2e-120 434.1 315 74.9
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.2e-119 433.7 309 76.1
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.2e-119 433.7 315 73.7
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 6.0e-119 431.4 313 72.2
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 6.0e-119 431.4 315 71.7
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 3.0e-118 429.1 313 71.9
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 3.9e-118 428.7 316 71.2
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.1e-118 428.3 315 74.9
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 4.3e-117 425.2 315 69.8
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 9.5e-117 424.1 315 73.3
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.6e-116 423.3 316 70.9
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 4.7e-116 421.8 315 70.8
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.4e-115 419.5 315 74.0
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 8.9e-115 417.5 315 73.7
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.2e-114 417.2 315 70.5
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 5.8e-114 414.8 311 71.4
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 3.8e-113 412.1 315 69.8
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.4e-112 409.5 315 69.5
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.7e-111 406.0 313 70.0
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 3.5e-111 405.6 315 69.5
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 7.8e-111 404.4 261 83.1
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 4.3e-109 398.7 315 69.5
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.8e-107 393.3 261 77.8
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.8e-107 393.3 261 81.2
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 4.0e-107 392.1 315 69.8
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.0e-107 392.1 314 70.4
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.0e-107 392.1 315 70.2
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 6.9e-107 391.3 315 67.9
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 9.0e-107 391.0 364 62.6
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 2.0e-106 389.8 316 68.0
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.3e-105 387.1 314 68.2
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.7e-105 386.7 315 67.0
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.4e-104 383.6 314 67.5
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 7.8e-103 377.9 315 66.3
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 1.7e-102 376.7 311 66.6
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.7e-102 376.7 315 68.3
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 8.7e-102 374.4 314 65.0
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.1e-101 374.0 316 67.7
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.9e-101 373.2 315 67.9
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.6e-100 370.2 315 67.3
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 3.6e-100 369.0 314 65.3
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 4.8e-100 368.6 317 64.0
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 3.1e-99 365.9 315 67.0
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 9.0e-99 364.4 315 63.5
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 5.8e-98 361.7 332 62.7
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 4.9e-97 358.6 315 62.5
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.6e-95 353.6 315 64.1
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.6e-95 353.6 315 64.1
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 4.6e-95 352.1 315 62.2
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 6.0e-95 351.7 260 70.8
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 5.1e-94 348.6 316 62.3
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.7e-94 347.8 312 63.1
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.9e-93 346.7 313 62.9
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.3e-93 345.9 318 61.6
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 5.6e-93 345.1 316 62.7
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 2.8e-92 342.8 315 61.6
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 6.2e-92 341.7 318 62.6
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 5.3e-91 338.6 315 61.0
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 6.9e-91 338.2 315 63.2
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.5e-90 337.0 320 60.6
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.5e-90 337.0 315 59.0
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.8e-89 332.4 319 59.9
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 7.1e-88 328.2 314 57.6
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 2.1e-87 326.6 318 60.1
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.1e-87 326.6 315 57.5
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.6e-87 325.5 317 60.3
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 6.0e-87 325.1 315 59.7
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.3e-86 323.2 316 58.9
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 3.7e-84 315.8 316 59.2
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 4.0e-83 312.4 317 58.7
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 4.0e-83 312.4 317 58.7
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 6.9e-83 311.6 316 57.9
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 9.0e-83 311.2 312 59.0
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 5.8e-82 308.5 316 57.3
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.9e-81 306.2 315 52.1
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.9e-80 303.5 316 56.0
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.2e-80 302.4 321 57.9
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 9.3e-80 301.2 287 62.0
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.2e-79 300.8 316 57.3
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 4.6e-79 298.9 303 60.1
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.0e-78 297.7 316 52.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.5e-77 293.9 262 62.6
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.4e-75 287.3 310 57.1
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.8e-75 287.0 318 55.7
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 2.4e-75 286.6 315 54.9
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.1e-75 286.2 316 55.4
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 5.9e-74 282.0 315 55.2
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 2.2e-73 280.0 289 58.1
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 8.5e-73 278.1 316 52.2
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 5.5e-72 275.4 315 52.7
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.7e-71 273.1 315 50.5
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 2.7e-71 273.1 285 60.0
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 7.9e-71 271.6 237 65.0
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 7.9e-71 271.6 315 53.3
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 3.9e-70 269.2 284 58.8
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.9e-70 269.2 316 51.6
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 8.8e-70 268.1 296 57.4
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 5.7e-69 265.4 303 56.4
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 9.7e-69 264.6 270 60.7
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 5.3e-67 258.8 285 53.7
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.0e-62 244.6 315 48.3
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.7e-60 237.3 315 47.9
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 9.1e-59 231.5 330 41.8
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 2.6e-58 229.9 262 51.9
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 2.2e-57 226.9 297 49.8
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 2.2e-57 226.9 297 49.5
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.4e-54 217.6 313 42.5
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 2.0e-53 213.8 290 45.9
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 3.3e-53 213.0 134 89.6
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 1.3e-52 211.1 322 41.6
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.0e-50 203.8 239 53.1
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 5.0e-49 199.1 254 49.6
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.8e-43 180.6 152 67.8
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.7e-42 176.8 154 68.8
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 8.5e-41 171.8 185 49.2
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.2e-39 167.9 300 43.3
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 1.6e-39 167.5 229 49.3
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 5.9e-34 149.1 315 37.8
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 6.6e-33 145.6 317 37.9
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 2.7e-26 123.6 288 37.2
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 2.3e-25 120.6 139 54.7
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 4.7e-23 112.8 278 34.2
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 4.7e-23 112.8 278 34.2
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 3.9e-17 93.2 91 63.7
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.6e-15 87.8 55 85.5
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 2.0e-13 80.9 50 86.0
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 2.0e-13 80.9 288 31.6
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 2.0e-13 80.9 111 52.3
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 6.2e-07 59.3 95 47.4
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 3.1e-06 57.0 89 46.1


User provided reference genes

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