Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.7e-113 412.1 228 100.0
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.8e-93 346.3 211 92.9
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.5e-92 341.7 212 91.5
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.6e-86 323.2 213 83.6
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 5.3e-77 291.6 212 76.4
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.9e-74 283.1 212 76.4
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 7.2e-74 281.2 210 77.6
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 3.7e-70 268.9 193 78.8
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 8.2e-70 267.7 214 74.3
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 3.1e-69 265.8 212 73.1
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 6.9e-69 264.6 214 70.1
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.4e-66 256.9 212 71.2
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.4e-66 256.9 212 71.2
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 5.5e-66 255.0 213 71.4
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 1.1e-63 247.3 214 70.6
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.5e-63 246.9 212 69.3
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 9.7e-63 244.2 212 66.5
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 2.8e-62 242.7 215 70.7
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 3.7e-62 242.3 215 66.0
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 4.8e-62 241.9 226 65.5
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 4.8e-62 241.9 215 67.9
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 6.3e-62 241.5 212 67.9
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.4e-61 240.4 216 65.7
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.4e-61 240.4 214 65.9
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 1.4e-61 240.4 212 67.5
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.8e-61 240.0 215 69.3
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 3.1e-61 239.2 224 62.9
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 7.0e-61 238.0 222 68.0
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 2.6e-60 236.1 215 66.0
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.6e-60 236.1 213 67.1
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 8.5e-59 231.1 230 59.1
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.9e-58 229.9 212 64.2
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 4.2e-58 228.8 231 61.9
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 4.2e-58 228.8 226 62.4
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 5.5e-58 228.4 214 66.4
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 7.2e-58 228.0 214 68.2
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.2e-57 227.3 221 63.3
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 1.2e-57 227.3 213 65.7
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 2.1e-57 226.5 212 63.7
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.7e-57 226.1 230 60.4
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 2.7e-57 226.1 230 60.4
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 2.7e-57 226.1 223 63.7
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 4.7e-57 225.3 212 63.2
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 4.7e-57 225.3 212 62.7
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 6.1e-57 224.9 236 61.9
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.1e-57 224.9 230 61.3
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 6.1e-57 224.9 230 61.3
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 6.1e-57 224.9 212 64.2
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 8.0e-57 224.6 230 62.2
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.0e-56 224.2 225 62.2
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.0e-56 224.2 225 62.2
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.4e-56 223.8 209 65.6
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 3.0e-56 222.6 218 65.1
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.0e-56 222.6 126 89.7
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 3.0e-56 222.6 218 62.4
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.5e-55 220.3 235 59.6
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 2.6e-55 219.5 212 63.7
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.3e-55 219.2 169 76.9
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 7.4e-55 218.0 201 66.2
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 7.4e-55 218.0 215 64.2
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 9.7e-55 217.6 209 65.6
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 8.2e-54 214.5 235 60.4
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 8.2e-54 214.5 235 60.4
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 8.2e-54 214.5 213 62.4
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.4e-53 213.8 222 58.6
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.1e-53 212.6 221 62.0
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 1.2e-52 210.7 126 84.1
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 2.6e-52 209.5 227 61.2
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.6e-52 209.5 127 84.3
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 3.5e-52 209.1 212 62.7
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 5.9e-52 208.4 221 58.4
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 1.0e-51 207.6 226 61.5
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.7e-51 206.8 235 54.9
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 2.2e-51 206.5 126 85.7
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 5.0e-51 205.3 260 54.2
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 6.5e-51 204.9 234 56.8
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.5e-50 203.8 212 60.8
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.5e-50 203.8 126 81.7
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.5e-50 203.8 212 62.3
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.9e-50 203.4 212 59.0
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 2.5e-50 203.0 212 59.4
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 2.5e-50 203.0 127 79.5
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 3.2e-50 202.6 213 62.0
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 4.2e-50 202.2 229 57.2
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.5e-50 201.8 237 53.2
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 2.7e-49 199.5 243 51.9
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 4.7e-49 198.7 212 59.9
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 6.1e-49 198.4 228 56.1
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 6.1e-49 198.4 122 81.1
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.4e-48 197.2 232 53.4
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.4e-48 197.2 211 62.1
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 6.8e-48 194.9 211 59.2
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 1.2e-47 194.1 212 59.9
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.2e-47 194.1 127 78.0
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.0e-47 193.4 215 57.7
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.6e-47 193.0 220 57.3
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 2.6e-47 193.0 244 52.5
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 7.5e-47 191.4 231 54.1
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.3e-46 190.7 193 64.2
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 2.8e-46 189.5 212 58.0
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 6.3e-46 188.3 124 77.4
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 6.3e-46 188.3 200 57.5
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 3.1e-45 186.0 215 56.3
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 5.4e-45 185.3 212 55.2
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 9.1e-45 184.5 218 52.8
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 4.5e-44 182.2 212 56.6
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 7.7e-44 181.4 210 55.2
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 7.7e-44 181.4 210 54.3
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.0e-43 181.0 210 54.8
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 2.9e-43 179.5 210 54.3
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 2.9e-43 179.5 105 87.6
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 2.9e-43 179.5 218 53.2
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 1.1e-42 177.6 207 51.7
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.5e-42 177.2 106 86.8
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 5.5e-42 175.3 105 85.7
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 2.7e-41 172.9 219 54.8
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 6.1e-41 171.8 213 52.1
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 5.2e-40 168.7 207 51.7
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.5e-39 167.2 226 51.3
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.7e-38 162.5 136 72.1
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 4.1e-37 159.1 198 57.1
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 4.1e-37 159.1 125 67.2
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 1.6e-36 157.1 128 66.4
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.7e-36 156.4 194 58.2
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.7e-35 153.7 95 76.8
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 3.8e-35 152.5 197 51.3
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 3.8e-35 152.5 197 51.3
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 3.8e-35 152.5 101 80.2
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 6.6e-35 151.8 185 53.5
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.2e-34 148.3 109 72.5
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-33 147.5 127 62.2
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 1.2e-33 147.5 170 60.6
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 3.6e-33 146.0 215 47.9
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-32 144.1 113 67.3
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.4e-32 144.1 125 61.6
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.0e-32 142.5 212 46.7
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.3e-30 137.5 137 63.5
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 2.9e-30 136.3 212 45.8
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 6.3e-30 135.2 214 43.5
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-29 134.0 133 57.1
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 4.6e-28 129.0 115 63.5
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-26 124.4 216 46.8
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 1.5e-26 124.0 103 58.3
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 7.3e-26 121.7 224 43.3
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.6e-25 120.6 173 53.8
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 1.0e-24 117.9 217 43.3
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 4.9e-22 109.0 146 53.4
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.4e-21 106.7 82 69.5
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 4.6e-20 102.4 79 65.8
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 1.6e-17 94.0 167 45.5
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 6.4e-14 82.0 48 77.1
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 7.1e-13 78.6 120 40.8
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 2.1e-12 77.0 101 39.6
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 3.5e-12 76.3 65 58.5
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.0e-11 74.7 108 51.9
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 9.5e-10 68.2 109 49.5
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 2.1e-09 67.0 93 46.2
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 1.8e-08 63.9 147 39.5
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 1.8e-08 63.9 41 68.3
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.8e-08 63.9 107 46.7
Solyc05g016715.1 Solanum lycopersicum HOM05D001240 ORTHO05D037679 4.0e-08 62.8 108 46.3
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 1.5e-07 60.8 37 73.0
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 4.9e-06 55.8 45 64.4


User provided reference genes

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