Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 3.5e-197 691.4 348 100.0
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.6e-154 549.7 325 88.6
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 2.8e-154 548.9 346 81.2
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 1.4e-153 546.6 346 81.5
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 1.1e-145 520.4 345 78.8
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 2.2e-127 459.5 258 88.8
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 6.1e-125 451.4 345 66.7
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 3.1e-121 439.1 345 66.1
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 4.5e-120 435.3 356 63.8
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 1.7e-119 433.3 347 64.3
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 3.2e-118 429.1 347 64.6
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 1.8e-113 413.3 339 62.8
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 2.4e-113 412.9 346 61.8
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 7.0e-113 411.4 358 59.8
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 1.6e-112 410.2 288 69.4
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 1.6e-112 410.2 288 69.8
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 1.3e-111 407.1 289 67.8
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 2.9e-111 406.0 289 68.2
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 2.1e-109 399.8 332 62.7
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 8.0e-109 397.9 321 62.6
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 8.0e-109 397.9 307 65.1
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 1.0e-108 397.5 288 67.4
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 1.0e-108 397.5 352 59.1
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 1.4e-108 397.1 327 62.7
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 1.2e-107 394.0 332 60.8
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 2.6e-107 392.9 351 57.3
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 5.7e-107 391.7 339 60.5
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 9.8e-107 391.0 327 62.4
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 9.8e-107 391.0 298 64.1
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 9.8e-107 391.0 340 60.9
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 9.8e-107 391.0 289 67.1
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 9.8e-107 391.0 351 56.7
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 1.7e-106 390.2 315 64.1
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 4.9e-106 388.7 327 61.8
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 6.4e-106 388.3 328 63.4
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 6.4e-106 388.3 326 62.0
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 6.4e-106 388.3 328 63.4
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 6.4e-106 388.3 339 59.9
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 8.3e-106 387.9 327 61.8
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 8.3e-106 387.9 287 69.0
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 8.3e-106 387.9 331 60.7
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 1.1e-105 387.5 315 64.1
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 1.1e-105 387.5 283 66.4
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 1.8e-105 386.7 289 67.1
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 5.4e-105 385.2 283 66.8
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 5.4e-105 385.2 299 64.2
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 1.2e-104 384.0 282 68.1
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 1.6e-104 383.6 328 60.4
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 1.6e-104 383.6 317 65.0
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 1.6e-104 383.6 283 65.7
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 7.8e-104 381.3 337 59.9
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 7.8e-104 381.3 329 62.0
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 1.3e-103 380.6 416 51.2
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 2.3e-103 379.8 283 65.7
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 3.9e-103 379.0 318 60.1
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 5.0e-103 378.6 337 59.6
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 6.6e-103 378.3 337 59.9
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 8.6e-103 377.9 315 61.0
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 1.1e-102 377.5 289 64.0
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 1.1e-102 377.5 292 67.1
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 1.5e-102 377.1 308 64.3
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.9e-102 376.7 354 57.6
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 1.9e-102 376.7 283 64.7
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 4.3e-102 375.6 341 57.2
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 9.5e-102 374.4 296 62.2
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 9.5e-102 374.4 320 60.6
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 2.1e-101 373.2 199 90.5
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 2.8e-101 372.9 319 58.9
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 3.6e-101 372.5 288 63.2
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 3.6e-101 372.5 286 63.3
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.4e-100 370.5 319 58.9
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 8.9e-100 367.9 363 54.3
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 1.2e-99 367.5 378 54.2
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 4.4e-99 365.5 297 64.0
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 9.8e-99 364.4 289 62.6
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 1.3e-98 364.0 347 55.3
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 2.0e-96 356.7 358 54.2
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 3.9e-95 352.4 363 55.1
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 9.5e-94 347.8 316 56.3
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 3.6e-93 345.9 311 60.1
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 8.1e-93 344.7 256 65.6
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 1.1e-92 344.4 335 57.3
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 1.9e-89 333.6 282 62.1
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 3.9e-87 325.9 308 53.9
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 2.5e-86 323.2 343 51.3
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 3.1e-84 316.2 294 54.8
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 4.0e-84 315.8 349 52.1
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 8.9e-84 314.7 273 60.1
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-79 300.8 228 62.7
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 7.3e-78 295.0 283 55.8
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 9.6e-78 294.7 271 57.9
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 2.0e-75 287.0 285 55.1
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 7.1e-65 251.9 298 45.3
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 2.7e-64 250.0 311 43.1
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 1.1e-62 244.6 261 51.0
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 3.8e-58 229.6 298 41.3
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 7.1e-57 225.3 154 70.8
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 2.0e-51 207.2 367 38.4
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 7.6e-51 205.3 146 67.8
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 1.1e-49 201.4 218 51.8
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 1.3e-47 194.5 225 43.6
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 2.8e-45 186.8 136 66.2
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 1.7e-42 177.6 279 39.8
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 8.2e-37 158.7 364 32.4
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 5.9e-35 152.5 300 37.7
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 6.9e-28 129.0 162 44.4
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 1.0e-26 125.2 104 62.5
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.7e-26 124.4 143 44.1
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 6.3e-21 105.9 67 73.1
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 7.2e-17 92.4 99 45.5
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 7.0e-12 75.9 152 34.9
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 4.7e-08 63.2 174 34.5
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 6.1e-08 62.8 174 34.5
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 6.1e-08 62.8 174 34.5
SalBow8G1474 Salvia bowleyana HOM05D000221 ORTHO05D359434 8.0e-08 62.4 55 52.7
CSS0007107 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 1.4e-07 61.6 58 50.0
CSS0022959 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 1.4e-07 61.6 58 50.0
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.8e-07 61.2 166 35.5
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 2.3e-07 60.8 151 32.5
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 3.0e-07 60.5 151 32.5
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 5.2e-07 59.7 211 32.2
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 5.2e-07 59.7 215 30.7
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 5.2e-07 59.7 151 29.8
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 5.2e-07 59.7 179 33.5
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 6.8e-07 59.3 151 31.1
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 8.8e-07 58.9 211 32.2
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 8.8e-07 58.9 152 30.3
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 8.8e-07 58.9 206 32.0
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 1.2e-06 58.5 148 30.4
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 1.2e-06 58.5 187 32.1
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 1.2e-06 58.5 180 32.8
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.2e-06 58.5 175 32.6
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.5e-06 58.2 180 32.8
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 1.5e-06 58.2 177 33.3
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 1.5e-06 58.2 199 32.2
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 3.4e-06 57.0 177 32.8
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 4.4e-06 56.6 177 32.8
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 4.4e-06 56.6 151 29.8
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 5.7e-06 56.2 148 27.7
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 5.7e-06 56.2 183 32.2
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 7.5e-06 55.8 181 32.0
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 7.5e-06 55.8 183 31.7
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 7.5e-06 55.8 187 32.1
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 7.5e-06 55.8 157 33.8
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 9.8e-06 55.5 170 31.2


User provided reference genes

Program Settings