Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.0e-90 336.7 166 100.0
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 3.8e-56 221.9 125 88.0
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.9e-55 219.5 125 86.4
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 6.6e-53 211.1 125 86.4
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 6.6e-53 211.1 125 83.2
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 1.9e-52 209.5 125 82.4
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.5e-52 209.1 125 82.4
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.3e-52 208.8 125 81.6
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 4.3e-52 208.4 125 81.6
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 3.6e-51 205.3 125 82.4
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 8.1e-51 204.1 125 81.6
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 4.0e-50 201.8 125 79.2
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 6.9e-50 201.1 125 80.0
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 6.4e-48 194.5 125 76.8
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 8.4e-48 194.1 125 78.4
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.1e-47 193.7 125 77.6
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 7.1e-47 191.0 125 76.0
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.2e-46 190.3 126 75.4
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 2.1e-46 189.5 127 75.6
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 2.7e-46 189.1 125 75.2
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 2.7e-46 189.1 125 76.8
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 3.5e-46 188.7 125 76.8
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 6.0e-46 188.0 125 77.6
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.0e-45 187.2 125 74.4
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 1.7e-45 186.4 125 73.6
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 1.7e-45 186.4 125 76.8
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 2.3e-45 186.0 125 75.2
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 8.7e-45 184.1 125 72.8
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.1e-44 183.7 125 72.0
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 3.3e-44 182.2 125 72.0
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 9.6e-44 180.6 125 70.4
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 1.6e-43 179.9 125 72.8
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 2.1e-43 179.5 127 73.2
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 2.8e-43 179.1 125 71.2
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 4.8e-43 178.3 128 71.1
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 1.4e-42 176.8 128 72.7
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 1.8e-42 176.4 125 72.8
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 1.8e-42 176.4 129 71.3
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 2.4e-42 176.0 125 72.8
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 2.4e-42 176.0 125 73.6
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 3.1e-42 175.6 130 69.2
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 4.0e-42 175.3 138 67.4
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 5.3e-42 174.9 125 73.6
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 6.9e-42 174.5 126 70.6
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 9.0e-42 174.1 125 72.0
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 1.2e-41 173.7 125 72.8
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 1.2e-41 173.7 125 72.8
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 1.5e-41 173.3 128 68.8
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 2.0e-41 172.9 125 72.0
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 2.6e-41 172.6 129 70.5
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 2.6e-41 172.6 125 72.0
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 2.6e-41 172.6 125 71.2
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 3.4e-41 172.2 125 70.4
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 3.4e-41 172.2 125 72.0
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 4.5e-41 171.8 125 70.4
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 4.5e-41 171.8 125 70.4
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 4.5e-41 171.8 125 70.4
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 4.5e-41 171.8 125 70.4
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 4.5e-41 171.8 125 70.4
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 4.5e-41 171.8 126 69.0
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 5.8e-41 171.4 129 70.5
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 7.6e-41 171.0 130 71.5
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 7.6e-41 171.0 130 71.5
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 7.6e-41 171.0 125 70.4
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 7.6e-41 171.0 125 71.2
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 7.6e-41 171.0 125 70.4
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 9.9e-41 170.6 125 72.8
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 9.9e-41 170.6 125 69.6
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 1.3e-40 170.2 125 68.8
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.3e-40 170.2 125 71.2
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 1.7e-40 169.9 127 69.3
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 2.9e-40 169.1 125 70.4
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 2.9e-40 169.1 125 70.4
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 2.9e-40 169.1 125 70.4
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 3.8e-40 168.7 126 69.8
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 3.8e-40 168.7 125 70.4
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 3.8e-40 168.7 125 68.8
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 3.8e-40 168.7 125 69.6
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 3.8e-40 168.7 127 70.9
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 4.9e-40 168.3 125 71.2
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 8.4e-40 167.5 129 69.0
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 1.1e-39 167.2 125 70.4
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 1.4e-39 166.8 125 69.6
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 3.2e-39 165.6 129 68.2
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 4.2e-39 165.2 125 69.6
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 5.4e-39 164.9 125 69.6
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 5.4e-39 164.9 125 68.0
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 3.5e-38 162.2 125 66.4
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 3.5e-38 162.2 125 67.2
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 7.9e-38 161.0 130 66.2
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 8.7e-37 157.5 130 64.6
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 2.5e-36 156.0 125 63.2
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 1.6e-35 153.3 125 64.8
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 6.2e-35 151.4 125 67.2
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.4e-34 150.2 130 63.1
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 1.8e-34 149.8 130 64.6
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 9.0e-34 147.5 110 70.0
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 9.0e-34 147.5 110 70.0
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 2.6e-33 146.0 125 60.8
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 7.6e-33 144.4 125 63.2
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 1.3e-32 143.7 125 61.6
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 4.9e-32 141.7 130 61.5
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 1.4e-31 140.2 125 60.8
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 1.9e-31 139.8 126 61.1
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 5.5e-31 138.3 125 61.6
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 5.5e-31 138.3 125 60.8
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 7.1e-31 137.9 129 62.0
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.7e-30 136.0 130 60.0
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 4.6e-30 135.2 125 59.2
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 1.0e-29 134.0 126 57.1
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 2.5e-28 129.4 128 57.8
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.5e-28 129.4 89 71.9
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 2.5e-28 129.4 117 58.1
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 5.8e-25 118.2 125 54.4
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.0e-24 117.5 125 53.6
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 2.7e-22 109.4 131 51.1
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 1.0e-21 107.5 141 48.2
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 2.3e-21 106.3 96 60.4
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 6.7e-21 104.8 137 44.5
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 9.7e-20 100.9 87 62.1
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 1.6e-19 100.1 125 52.0
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 6.1e-14 81.6 74 63.5
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 1.8e-13 80.1 76 57.9
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 9.7e-12 74.3 67 67.2
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 2.8e-11 72.8 75 58.7
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 5.9e-09 65.1 77 49.4
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 5.0e-08 62.0 42 73.8
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 1.1e-07 60.8 54 61.1


User provided reference genes

Program Settings