Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 2.5e-286 988.0 479 100.0
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 7.3e-278 959.9 479 97.3
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 2.3e-255 885.2 479 89.4
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.9e-255 884.4 479 89.8
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 2.4e-249 865.1 479 87.9
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 1.2e-248 862.8 479 87.7
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 1.5e-230 802.7 483 82.8
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 8.5e-194 680.6 485 69.5
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 4.5e-187 658.3 485 68.7
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 7.2e-185 651.0 441 72.8
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 3.6e-184 648.7 481 68.0
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 3.4e-182 642.1 484 67.8
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 9.8e-182 640.6 441 71.0
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 2.2e-181 639.4 481 66.7
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 2.2e-181 639.4 441 71.0
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 7.0e-180 634.4 479 65.6
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 2.7e-179 632.5 445 70.6
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 1.1e-177 627.1 484 65.3
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 1.1e-177 627.1 467 68.1
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 9.5e-177 624.0 481 65.1
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 9.5e-177 624.0 446 68.8
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 9.5e-177 624.0 484 65.5
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 3.6e-176 622.1 466 67.6
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 4.7e-176 621.7 418 73.2
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 4.7e-176 621.7 442 69.9
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 8.0e-176 620.9 446 68.8
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 1.4e-175 620.2 453 69.1
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 1.8e-175 619.8 447 68.9
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 2.3e-175 619.4 508 61.6
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 3.0e-175 619.0 445 69.4
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.0e-175 618.6 450 68.0
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 6.8e-175 617.8 354 82.8
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 1.2e-174 617.1 450 67.8
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 1.2e-174 617.1 482 65.6
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 1.5e-174 616.7 404 73.3
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 5.7e-174 614.8 495 64.0
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 1.7e-173 613.2 363 81.0
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 2.9e-173 612.5 363 79.6
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.9e-173 611.7 450 66.9
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 6.3e-173 611.3 526 63.5
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 1.1e-172 610.5 447 66.4
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 1.1e-172 610.5 488 64.3
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 1.1e-172 610.5 366 79.5
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 1.4e-172 610.1 491 64.2
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 2.0e-171 606.3 451 66.7
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 2.0e-171 606.3 451 66.7
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.7e-171 605.9 441 69.2
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 5.9e-171 604.7 363 77.7
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 7.8e-171 604.4 363 77.7
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 2.3e-170 602.8 375 79.2
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 2.3e-170 602.8 516 60.5
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 2.9e-170 602.4 380 75.8
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 5.0e-170 601.7 372 78.0
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 6.6e-170 601.3 483 64.4
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 1.5e-169 600.1 360 78.9
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 1.2e-168 597.0 424 70.8
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 1.6e-168 596.7 420 70.7
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 2.8e-168 595.9 375 78.1
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 4.7e-168 595.1 454 66.5
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 1.8e-167 593.2 362 78.7
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 3.1e-167 592.4 364 78.3
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 6.8e-167 591.3 364 78.0
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 1.5e-166 590.1 357 78.4
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 7.5e-166 587.8 447 65.8
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 7.5e-166 587.8 356 77.5
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 2.2e-165 586.3 364 77.2
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.2e-165 586.3 364 77.2
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 2.2e-165 586.3 380 73.9
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 4.9e-165 585.1 356 77.2
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 3.2e-164 582.4 396 69.7
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 3.2e-164 582.4 363 75.2
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 7.0e-164 581.3 363 75.5
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 2.0e-163 579.7 418 69.1
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 6.0e-163 578.2 373 74.8
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 7.8e-163 577.8 356 76.7
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 7.8e-163 577.8 483 63.4
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 5.0e-162 575.1 445 63.8
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 6.6e-162 574.7 357 77.3
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 8.6e-162 574.3 487 61.6
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 9.5e-161 570.9 451 63.6
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 3.1e-159 565.8 391 70.1
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 6.8e-159 564.7 442 64.7
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 8.9e-159 564.3 357 75.9
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 1.2e-155 553.9 380 70.5
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 7.8e-155 551.2 371 71.2
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 1.3e-154 550.4 570 52.6
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 1.7e-154 550.1 443 61.4
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 5.1e-154 548.5 364 73.9
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 6.4e-149 531.6 485 58.1
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 8.4e-149 531.2 485 58.1
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.1e-148 530.8 376 70.5
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 1.4e-148 530.4 461 60.5
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 2.4e-148 529.6 375 68.3
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 9.2e-148 527.7 366 68.6
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 7.8e-147 524.6 361 70.6
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 7.8e-147 524.6 459 59.5
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 8.6e-146 521.2 308 78.2
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 6.2e-144 515.0 388 66.0
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 5.4e-140 501.9 359 66.6
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 2.3e-138 496.5 284 81.0
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 3.2e-132 476.1 380 60.5
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.6e-128 463.8 331 66.2
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 3.6e-128 462.6 404 57.9
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.4e-124 450.7 421 58.2
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 7.1e-124 448.4 432 52.1
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.0e-109 401.4 294 61.6
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 2.2e-109 400.2 266 68.8
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 6.9e-103 378.6 273 67.8
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 1.6e-99 367.5 242 71.5
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 1.2e-94 351.3 373 53.4
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 1.4e-92 344.4 194 80.4
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.6e-73 280.4 204 58.3
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.6e-73 280.4 204 58.3
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.8e-72 276.2 204 57.8
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.4e-71 273.9 204 56.9
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 1.2e-70 271.6 319 44.5
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 3.6e-67 260.0 305 43.3
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.1e-59 234.2 210 59.0
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 2.1e-38 164.5 141 64.5
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.8e-34 151.4 98 62.2
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 2.4e-18 97.8 93 65.6
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 3.5e-14 84.0 84 63.1
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 2.5e-12 77.8 271 25.1
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 4.3e-12 77.0 293 23.2
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 5.6e-12 76.6 312 23.4
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 1.3e-11 75.5 299 23.1
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.3e-11 75.5 299 23.1
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.6e-11 75.1 286 24.5
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.1e-11 74.7 312 22.8
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 6.2e-11 73.2 299 23.1
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 8.1e-11 72.8 285 23.5
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 1.4e-10 72.0 296 21.6
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.8e-10 71.6 281 24.2
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.4e-10 71.2 353 22.9
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 2.4e-10 71.2 312 21.8
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.1e-10 70.9 316 22.8
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 3.1e-10 70.9 293 22.5
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.1e-10 70.9 301 23.3
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 4.0e-10 70.5 308 23.1
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 5.3e-10 70.1 276 23.2
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 6.9e-10 69.7 269 22.7
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 6.9e-10 69.7 246 21.5
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 2.0e-09 68.2 310 23.5
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.6e-09 67.8 340 23.5
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 3.4e-09 67.4 355 22.0
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 2.2e-08 64.7 380 22.9
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 2.9e-08 64.3 320 22.5


User provided reference genes

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