Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 0.0e+00 1761.1 868 100.0
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 0.0e+00 1669.1 868 95.0
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 0.0e+00 1637.1 868 93.3
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 0.0e+00 1411.7 865 80.6
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 0.0e+00 1405.6 868 80.2
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 0.0e+00 1393.6 868 79.3
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 0.0e+00 1390.2 868 79.0
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 0.0e+00 1384.0 878 78.6
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 4.1e-271 938.3 880 56.8
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.1e-252 877.1 865 53.3
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.2e-251 873.6 865 53.1
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 1.1e-250 870.5 888 53.0
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 3.8e-240 835.5 869 51.6
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 8.6e-237 824.3 896 50.9
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.8e-234 816.6 872 50.5
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 3.1e-234 815.8 877 50.6
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 3.8e-232 808.9 891 50.3
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 1.7e-229 800.0 882 49.5
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.0e-226 788.9 899 49.3
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 2.0e-225 786.6 889 50.1
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.4e-225 785.8 912 48.6
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 8.4e-224 781.2 892 48.8
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 3.2e-223 779.2 880 48.9
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 4.2e-223 778.9 912 48.1
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 1.2e-222 777.3 892 48.5
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 6.0e-222 775.0 886 48.8
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 7.9e-222 774.6 880 48.9
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 3.3e-220 769.2 887 48.0
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 4.3e-220 768.8 891 47.6
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 4.3e-220 768.8 896 47.2
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 9.6e-220 767.7 877 47.9
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 1.1e-218 764.2 890 47.9
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.5e-217 760.4 924 47.2
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.2e-216 756.5 888 48.4
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 4.9e-216 755.4 886 47.5
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 6.0e-214 748.4 891 46.8
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.0e-213 747.7 885 47.5
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 1.8e-213 746.9 881 47.2
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 5.1e-213 745.3 871 47.3
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 1.9e-212 743.4 886 47.7
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 4.3e-212 742.3 879 46.8
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.6e-211 740.3 893 47.8
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.7e-211 739.2 916 45.5
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 5.3e-210 735.3 888 47.4
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 2.6e-209 733.0 895 45.3
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 5.1e-205 718.8 875 47.0
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.6e-203 713.8 890 45.7
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 3.7e-203 712.6 886 46.4
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 4.5e-201 705.7 895 45.8
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 1.7e-200 703.7 894 44.6
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.2e-200 703.4 872 46.1
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 2.9e-200 703.0 904 44.9
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 2.1e-198 696.8 903 45.3
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.1e-196 691.0 984 43.3
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.5e-196 690.6 886 45.3
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.5e-196 690.6 886 45.3
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 5.7e-196 688.7 876 45.0
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 7.4e-196 688.3 894 45.1
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.6e-195 687.2 895 45.8
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 2.2e-195 686.8 908 44.8
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 1.1e-194 684.5 901 44.6
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.4e-194 684.1 901 44.4
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 9.1e-194 681.4 893 44.6
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 5.9e-193 678.7 869 45.1
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 5.9e-193 678.7 896 44.6
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.7e-192 677.2 893 44.1
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 5.0e-192 675.6 868 45.9
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 8.5e-192 674.9 914 44.2
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.4e-191 674.1 859 45.5
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 4.2e-191 672.5 874 45.7
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 3.6e-190 669.5 875 45.7
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 3.9e-189 666.0 876 44.5
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 3.9e-189 666.0 876 44.5
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 6.7e-189 665.2 804 45.1
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 1.1e-188 664.5 903 43.4
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 2.6e-188 663.3 888 43.1
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.3e-188 662.9 861 45.8
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 3.3e-188 662.9 891 44.0
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 4.8e-187 659.1 885 44.0
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 1.4e-186 657.5 875 44.7
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 3.1e-186 656.4 877 43.9
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 5.9e-185 652.1 868 44.0
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 4.2e-183 646.0 763 47.1
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 9.4e-183 644.8 875 44.1
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 2.1e-182 643.7 874 44.3
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.8e-181 640.6 877 43.4
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 6.7e-181 638.6 891 42.1
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 9.7e-180 634.8 874 43.4
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 6.3e-179 632.1 614 54.1
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 1.1e-178 631.3 880 41.2
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 3.1e-178 629.8 766 46.6
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 7.0e-178 628.6 752 47.5
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 2.0e-177 627.1 874 43.9
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 2.0e-177 627.1 874 43.9
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 8.2e-171 605.1 814 41.6
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 1.4e-170 604.4 836 42.8
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 9.1e-170 601.7 942 41.1
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 5.9e-169 599.0 885 42.5
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 1.8e-165 587.4 940 39.3
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 3.4e-164 583.2 950 40.4
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.1e-162 576.6 758 43.1
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 6.5e-160 568.9 903 38.3
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 3.3e-159 566.6 878 41.3
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 4.5e-153 546.2 684 43.7
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 4.5e-153 546.2 690 45.4
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 5.0e-144 516.2 608 47.2
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 5.2e-141 506.1 711 41.4
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 9.8e-140 501.9 611 45.7
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 1.5e-135 488.0 795 37.9
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 5.6e-135 486.1 574 49.5
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.3e-133 480.7 671 41.1
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 7.1e-130 469.2 661 41.0
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 7.1e-130 469.2 627 43.2
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.5e-127 461.5 569 47.1
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 5.4e-122 443.0 900 36.1
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 9.3e-114 415.6 517 47.0
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 5.8e-100 369.8 365 52.3
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.2e-98 364.0 534 41.2
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 2.1e-97 361.3 569 38.7
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 4.6e-97 360.1 651 37.0
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 7.6e-92 342.8 481 41.6
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 5.5e-90 336.7 559 37.7
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 6.0e-89 333.2 516 41.3
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 1.3e-88 332.0 991 29.3
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.3e-79 300.8 354 48.6
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 6.5e-75 286.6 1094 26.0
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.7e-73 281.2 521 34.5
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 7.4e-71 273.1 1137 24.5
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 8.5e-67 259.6 237 59.9
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 1.1e-63 249.2 339 43.7
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 1.4e-61 242.3 174 74.7
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 8.8e-56 223.0 311 43.7
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 1.2e-55 222.6 187 60.4
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 3.7e-54 217.6 181 63.0
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 8.8e-48 196.4 164 63.4
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.7e-47 193.7 238 49.2
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 6.3e-46 190.3 335 37.0
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 5.4e-45 187.2 181 55.2
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 1.9e-42 178.7 199 53.3
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 2.1e-41 175.3 181 51.4
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.1e-37 162.9 117 67.5
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 2.9e-35 154.8 120 67.5
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 5.0e-35 154.1 147 57.8
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 6.6e-35 153.7 148 58.1
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 9.5e-34 149.8 147 55.8
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 2.8e-33 148.3 257 38.1
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 8.0e-33 146.7 203 40.9
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.0e-32 146.4 1055 22.5
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 2.6e-31 141.7 267 33.7
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 5.4e-29 134.0 136 55.9
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 7.0e-29 133.7 136 55.1
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 6.0e-28 130.6 130 56.9
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 1.0e-27 129.8 125 52.8
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 1.3e-27 129.4 136 52.9
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 1.3e-27 129.4 457 26.5
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 6.6e-27 127.1 125 51.2
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.9e-26 125.6 314 29.6
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 7.3e-26 123.6 96 64.6
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 9.5e-26 123.2 94 54.3
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 1.2e-25 122.9 919 22.6
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.6e-25 121.3 98 62.2
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.5e-23 115.9 90 65.6
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 7.0e-21 107.1 79 68.4
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.1e-20 105.5 99 50.5
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 2.3e-19 102.1 90 67.8
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 8.9e-16 90.1 353 23.5
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 2.0e-15 89.0 156 35.9
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 1.1e-13 83.2 63 71.4
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 4.1e-13 81.3 64 67.2
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 9.2e-13 80.1 212 33.0
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.5e-12 78.2 80 53.8
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 3.0e-11 75.1 239 26.8
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 5.1e-11 74.3 327 22.9
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 2.5e-10 72.0 100 48.0
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.1e-09 67.0 71 53.5
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.8e-08 65.9 62 59.7
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 4.0e-08 64.7 101 38.6
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 5.2e-08 64.3 49 57.1
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.6e-07 62.0 56 53.6
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 8.4e-06 57.0 48 52.1


User provided reference genes

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