Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 5.6e-170 600.9 310 100.0
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 5.0e-155 551.2 310 93.5
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.3e-147 526.6 309 90.6
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 5.1e-147 524.6 308 89.3
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 5.1e-147 524.6 309 90.3
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 1.9e-146 522.7 309 90.0
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 9.9e-127 457.2 297 79.8
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.5e-119 433.3 305 75.4
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.8e-115 419.9 291 73.9
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 8.7e-115 417.5 309 72.5
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 3.3e-114 415.6 294 74.5
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.8e-113 412.5 298 71.1
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.1e-112 410.6 312 70.2
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.1e-112 410.6 309 71.2
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.4e-112 409.5 295 71.5
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 4.0e-112 408.7 298 71.1
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 4.0e-112 408.7 297 70.7
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 5.3e-112 408.3 311 71.1
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 5.3e-112 408.3 277 75.1
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.9e-112 407.9 257 78.6
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 2.6e-111 406.0 287 71.8
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 5.8e-111 404.8 278 75.5
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 5.8e-111 404.8 306 70.9
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 7.6e-111 404.4 305 67.5
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.0e-110 404.1 273 74.0
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.0e-110 404.1 284 71.5
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 1.0e-110 404.1 305 69.8
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 1.0e-110 404.1 296 72.3
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.3e-110 403.7 259 77.6
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.7e-110 403.3 306 70.6
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.7e-110 403.3 294 70.4
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.7e-110 403.3 294 70.4
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 2.2e-110 402.9 311 69.8
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 2.9e-110 402.5 287 71.8
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 4.9e-110 401.7 299 69.2
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 4.9e-110 401.7 307 70.0
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 6.5e-110 401.4 304 70.1
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.4e-109 400.2 300 69.3
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.4e-109 400.2 300 69.3
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.4e-109 400.2 269 74.0
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 1.4e-109 400.2 284 71.1
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.9e-109 399.8 310 67.4
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 1.9e-109 399.8 305 68.5
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 2.5e-109 399.4 296 68.9
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 2.5e-109 399.4 293 70.0
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 2.5e-109 399.4 289 70.9
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 3.2e-109 399.1 291 70.4
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 4.2e-109 398.7 295 70.5
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 5.5e-109 398.3 257 75.9
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 5.5e-109 398.3 305 68.9
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 9.3e-109 397.5 308 67.5
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 9.3e-109 397.5 291 70.1
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 9.3e-109 397.5 293 70.3
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.6e-108 396.7 285 72.6
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 1.6e-108 396.7 310 67.1
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 2.7e-108 396.0 297 69.4
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 4.6e-108 395.2 275 72.7
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 7.9e-108 394.4 305 66.6
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 7.9e-108 394.4 334 65.3
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.0e-107 394.0 295 71.9
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 1.0e-107 394.0 316 66.1
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 1.0e-107 394.0 316 66.1
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 2.3e-107 392.9 271 73.4
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 2.3e-107 392.9 294 69.7
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.3e-107 392.9 294 69.7
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 3.0e-107 392.5 328 63.7
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 3.9e-107 392.1 279 71.7
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 5.1e-107 391.7 294 69.0
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 6.7e-107 391.3 249 77.5
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.7e-107 391.0 294 69.4
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.9e-106 389.8 257 74.7
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.9e-106 389.8 279 71.0
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 2.5e-106 389.4 267 75.7
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 4.3e-106 388.7 277 71.1
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 4.3e-106 388.7 277 71.1
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.3e-106 388.7 292 69.2
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 4.3e-106 388.7 256 75.4
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 9.7e-106 387.5 249 79.1
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.3e-105 387.1 299 66.6
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 1.3e-105 387.1 291 67.7
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.3e-105 387.1 305 67.2
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 1.6e-105 386.7 276 71.7
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 6.3e-105 384.8 306 66.0
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.4e-104 383.6 269 70.3
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 1.4e-104 383.6 275 71.3
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 2.4e-104 382.9 299 66.9
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 2.4e-104 382.9 273 71.1
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 3.1e-104 382.5 269 69.9
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 1.2e-103 380.6 277 69.7
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.2e-103 380.6 285 70.2
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.2e-102 376.3 327 63.3
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 3.8e-102 375.6 320 64.1
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 5.0e-102 375.2 284 66.2
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 5.0e-102 375.2 282 70.6
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 5.0e-102 375.2 282 70.6
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 8.5e-102 374.4 262 70.2
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.1e-101 374.0 322 63.7
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.4e-101 373.6 291 67.7
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 7.2e-101 371.3 262 68.7
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 4.6e-100 368.6 293 68.6
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 3.9e-99 365.5 311 61.7
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 8.7e-99 364.4 248 73.4
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 5.7e-98 361.7 236 72.9
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 1.3e-97 360.5 311 63.0
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 3.1e-96 355.9 293 64.2
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 9.1e-96 354.4 302 64.2
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 1.0e-94 350.9 261 69.0
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 5.0e-94 348.6 293 63.8
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.1e-92 343.2 311 61.7
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 1.0e-91 340.9 308 62.0
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 3.0e-91 339.3 236 69.5
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 2.2e-89 333.2 270 63.7
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 1.8e-88 330.1 256 65.2
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 6.9e-88 328.2 246 70.7
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 3.2e-85 319.3 256 61.3
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 1.2e-84 317.4 260 61.5
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 6.3e-81 305.1 268 60.4
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 6.3e-81 305.1 239 64.0
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 2.6e-79 299.7 258 60.1
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 1.5e-77 293.9 255 59.2
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 1.6e-76 290.4 272 55.9
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 6.7e-75 285.0 259 58.7
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 3.7e-73 279.3 283 54.4
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 7.7e-71 271.6 179 74.9
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 7.7e-71 271.6 280 52.1
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.0e-70 268.9 282 53.2
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 2.5e-69 266.5 214 65.9
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.6e-68 263.8 179 73.2
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 1.2e-63 247.7 142 83.1
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 2.0e-63 246.9 142 84.5
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 5.0e-62 242.3 142 81.7
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 4.2e-61 239.2 213 54.9
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 9.5e-61 238.0 268 50.0
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.6e-54 215.3 182 62.6
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 5.8e-50 202.2 127 78.7
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 1.2e-47 194.5 114 83.3
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 4.6e-47 192.6 129 71.3
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.0e-46 189.9 271 43.9
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.5e-45 184.9 223 49.3
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 1.2e-44 184.5 241 47.7
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 2.8e-44 183.3 156 64.7
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 5.2e-35 152.5 241 40.7
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 2.7e-31 140.2 285 35.4
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.2e-28 131.3 84 72.6
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.1e-28 130.6 129 49.6
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 4.4e-26 122.9 172 48.3
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 4.4e-26 122.9 88 68.2
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 2.2e-25 120.6 82 69.5
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 1.4e-24 117.9 184 38.6
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 8.7e-22 108.6 72 69.4
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.6e-21 105.9 67 71.6
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 3.1e-19 100.1 209 39.2
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 2.6e-18 97.1 62 74.2
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 2.2e-17 94.0 148 44.6
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 2.4e-16 90.5 50 86.0
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 7.1e-16 89.0 237 30.4
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 2.3e-14 84.0 256 27.0
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 1.1e-13 81.6 154 31.2
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 3.3e-13 80.1 249 25.3
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 4.8e-12 76.3 142 30.3
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 1.3e-09 68.2 156 31.4
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 5.4e-08 62.8 142 28.9
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 9.3e-08 62.0 136 41.2
Zm00001eb379240 Zea mays HOM05D000565 ORTHO05D004389 3.5e-07 60.1 165 25.5
Cfa026899 Carpinus fangiana HOM05D000951 ORTHO05D003644 6.0e-07 59.3 257 23.7
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 7.9e-07 58.9 41 65.9
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 7.9e-07 58.9 41 65.9
PRCOL_00003073 Prasinoderma coloniale HOM05D004215 ORTHO05D018306 7.9e-07 58.9 162 32.1
CARHR020500 Cardamine hirsuta HOM05D000565 ORTHO05D004389 2.3e-06 57.4 165 24.8
Carub.0001s1955 Capsella rubella HOM05D000565 ORTHO05D004389 3.0e-06 57.0 165 24.8
COL.COLO4_26135 Corchorus olitorius HOM05D000565 ORTHO05D004389 3.0e-06 57.0 172 25.0
Aa31LG7G4470 Aethionema arabicum HOM05D000565 ORTHO05D004389 3.9e-06 56.6 165 24.8
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 3.9e-06 56.6 167 24.6
AL1G32800 Arabidopsis lyrata HOM05D000565 ORTHO05D004389 5.1e-06 56.2 167 24.6
AT1G20020 Arabidopsis thaliana HOM05D000565 ORTHO05D004389 5.1e-06 56.2 167 24.6
THA.LOC104811414 Tarenaya hassleriana HOM05D000565 ORTHO05D004389 5.1e-06 56.2 165 24.8
Gohir.A05G186100 Gossypium hirsutum HOM05D000565 ORTHO05D004389 6.7e-06 55.8 172 24.4
Gohir.D05G189000 Gossypium hirsutum HOM05D000565 ORTHO05D004389 6.7e-06 55.8 172 24.4
Gorai.009G194200 Gossypium raimondii HOM05D000565 ORTHO05D004389 6.7e-06 55.8 172 24.4
Mapoly0062s0041 Marchantia polymorpha HOM05D000565 ORTHO05D004389 6.7e-06 55.8 184 24.5
A07p16060 Brassica napus HOM05D000565 ORTHO05D004389 8.7e-06 55.5 165 24.8
GSVIVG01009925001 Vitis vinifera HOM05D000565 ORTHO05D004389 8.7e-06 55.5 165 24.8


User provided reference genes

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