Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.6e-98 362.8 190 100.0
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.3e-81 306.6 190 88.4
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 1.8e-70 269.6 189 77.8
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.6e-65 251.1 178 79.2
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.2e-58 230.3 184 69.0
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.9e-56 223.0 187 66.3
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.5e-56 222.6 156 79.5
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 9.0e-54 214.2 213 60.1
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 2.0e-53 213.0 213 60.1
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 7.6e-53 211.1 205 62.0
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 4.2e-43 178.7 190 56.3
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.1e-40 170.6 186 51.6
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 2.1e-39 166.4 181 50.8
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.1e-38 164.1 186 50.5
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.1e-38 164.1 204 50.0
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 2.4e-38 162.9 182 50.5
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 3.1e-38 162.5 208 48.1
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 5.3e-38 161.8 175 51.4
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 5.3e-38 161.8 190 53.2
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.5e-37 160.2 204 46.1
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.4e-37 159.1 178 50.6
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 8.4e-36 154.5 197 44.7
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.4e-35 153.7 137 55.5
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.5e-34 149.1 170 48.2
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 3.5e-34 149.1 187 43.9
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 6.0e-34 148.3 139 53.2
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 7.9e-34 147.9 181 47.0
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.0e-33 146.0 178 44.9
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.0e-33 146.0 178 44.4
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 5.1e-33 145.2 178 44.9
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.7e-33 144.8 136 55.9
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 6.7e-33 144.8 183 44.3
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 6.7e-33 144.8 182 42.3
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.1e-32 144.1 140 55.0
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.9e-32 143.3 177 43.5
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.5e-32 142.9 180 43.9
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.5e-32 142.9 170 47.1
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 4.3e-32 142.1 199 42.2
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 5.7e-32 141.7 178 43.3
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 2.1e-31 139.8 179 44.1
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 4.8e-31 138.7 183 45.9
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 4.8e-31 138.7 190 43.2
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 8.2e-31 137.9 181 40.9
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.4e-30 137.1 180 44.4
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 1.8e-30 136.7 179 43.6
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 2.4e-30 136.3 169 45.0
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 1.2e-29 134.0 178 43.3
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.5e-29 133.7 162 42.6
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.5e-29 133.7 136 48.5
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.5e-29 133.7 137 49.6
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 2.0e-29 133.3 177 42.4
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.0e-29 133.3 136 47.8
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 2.6e-29 132.9 178 42.1
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 4.5e-29 132.1 168 44.6
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 5.9e-29 131.7 177 42.4
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 1.3e-28 130.6 178 41.6
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.7e-28 130.2 180 41.1
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 2.2e-28 129.8 135 48.9
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 2.9e-28 129.4 173 43.9
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 3.8e-28 129.0 163 42.3
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 5.0e-28 128.6 139 44.6
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 5.0e-28 128.6 182 43.4
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 6.5e-28 128.3 163 41.7
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.4e-27 127.1 169 42.6
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.5e-27 126.3 169 42.0
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 2.5e-27 126.3 183 39.3
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 4.2e-27 125.6 182 41.8
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 5.5e-27 125.2 169 43.2
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 9.3e-27 124.4 161 41.6
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 2.7e-26 122.9 136 46.3
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.3e-25 120.6 169 41.4
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.8e-25 120.2 179 40.8
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.8e-25 120.2 187 38.5
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 3.9e-25 119.0 170 40.0
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 8.7e-25 117.9 185 40.0
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.1e-24 117.5 170 39.4
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.5e-24 117.1 163 39.9
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.9e-24 116.7 163 39.9
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 2.5e-24 116.3 178 37.1
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.3e-23 114.0 173 38.7
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.3e-23 114.0 163 39.3
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.8e-23 112.8 174 37.9
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 4.8e-23 112.1 172 39.0
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.8e-22 110.2 177 39.0
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.4e-22 109.8 172 39.5
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 6.9e-22 108.2 143 43.4
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 6.9e-22 108.2 140 37.9
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 9.0e-22 107.8 140 43.6
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 9.0e-22 107.8 136 39.7
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 9.0e-22 107.8 140 37.9
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 9.0e-22 107.8 140 37.9
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.2e-21 107.5 136 40.4
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.5e-21 107.1 135 43.7
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 7.7e-21 104.8 171 36.8
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.0e-20 104.4 134 47.0
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.7e-20 103.6 194 35.1
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.9e-20 102.8 129 41.9
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 3.8e-20 102.4 136 41.9
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.0e-20 102.1 134 40.3
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 5.0e-20 102.1 135 40.7
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 6.5e-20 101.7 134 39.6
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 8.5e-20 101.3 154 36.4
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 1.4e-19 100.5 169 35.5
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.9e-19 100.1 135 40.7
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 3.2e-19 99.4 134 38.1
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.2e-19 99.4 135 40.7
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 3.2e-19 99.4 180 35.0
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 4.2e-19 99.0 134 38.1
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 5.5e-19 98.6 169 34.9
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 5.5e-19 98.6 166 34.3
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 5.5e-19 98.6 174 34.5
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.5e-19 98.6 170 34.7
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.2e-19 98.2 137 38.0
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.6e-18 97.1 135 40.0
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.7e-18 96.3 137 38.0
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 4.6e-18 95.5 180 35.0
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 4.6e-18 95.5 133 38.3
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.1e-16 90.9 178 34.3
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.5e-16 89.7 148 41.2
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.3e-15 87.4 134 37.3
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.3e-15 87.4 77 53.2
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 3.7e-15 85.9 135 35.6
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 3.7e-15 85.9 136 42.6
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 5.3e-14 82.0 136 32.4
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.5e-13 80.5 101 39.6
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.4e-13 79.3 131 37.4
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.1e-11 74.3 152 29.6
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 1.4e-11 73.9 50 66.0
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 1.2e-10 70.9 134 29.9
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.7e-10 69.7 167 31.7
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 4.7e-10 68.9 73 46.6
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.6e-08 63.2 216 25.5
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.6e-08 63.2 100 35.0
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.6e-08 63.2 50 56.0
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 9.7e-08 61.2 50 56.0
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 2.4e-06 56.6 86 38.4


User provided reference genes

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