Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000222g0400 Nicotiana tabacum HOM05D006046 ORTHO05D007580 1.9e-127 459.1 221 100.0
Nitab4.5_0003092g0030 Nicotiana tabacum HOM05D006046 ORTHO05D007580 1.6e-110 402.9 222 89.6
CAN.G179.31 Capsicum annuum HOM05D006046 ORTHO05D007580 4.1e-90 335.1 319 59.6
Sopen01g030600 Solanum pennellii HOM05D006046 ORTHO05D007580 7.2e-87 324.3 320 57.5
PGSC0003DMG400001117 Solanum tuberosum HOM05D006046 ORTHO05D007580 6.1e-86 321.2 319 56.7
Solyc01g079090.4 Solanum lycopersicum HOM05D006046 ORTHO05D007580 1.8e-85 319.7 320 56.2
Peaxi162Scf00309g00623 Petunia axillaris HOM05D006046 ORTHO05D007580 8.7e-85 317.4 319 56.4
AL6G51640 Arabidopsis lyrata HOM05D006046 ORTHO05D007580 1.4e-74 283.5 167 83.2
AT4G01690 Arabidopsis thaliana HOM05D006046 ORTHO05D007580 3.1e-74 282.3 167 82.6
Carub.0006s3551 Capsella rubella HOM05D006046 ORTHO05D007580 3.1e-74 282.3 167 83.2
Dinv33175 Davidia involucrata HOM05D006046 ORTHO05D007580 9.1e-74 280.8 167 82.6
Thhalv10028544m.g Eutrema salsugineum HOM05D006046 ORTHO05D007580 1.5e-73 280.0 167 82.6
Sp6g01580 Schrenkiella parvula HOM05D006046 ORTHO05D007580 1.5e-73 280.0 167 82.6
THA.LOC104825927 Tarenaya hassleriana HOM05D006046 ORTHO05D007580 1.5e-73 280.0 167 82.0
Migut.D00009 Erythranthe guttata HOM05D006046 ORTHO05D007580 2.0e-73 279.6 160 84.4
Manes.05G008200 Manihot esculenta HOM05D006046 ORTHO05D007580 2.6e-73 279.3 167 82.6
SGA_v2.0_scaffold572G52966 Striga asiatica HOM05D006046 ORTHO05D007580 1.3e-72 276.9 160 84.4
Gohir.D11G110200 Gossypium hirsutum HOM05D006046 ORTHO05D007580 1.7e-72 276.6 159 84.3
Gorai.007G117800 Gossypium raimondii HOM05D006046 ORTHO05D007580 1.7e-72 276.6 159 84.3
Lalb_Chr21g0309871 Lupinus albus HOM05D006046 ORTHO05D007580 1.7e-72 276.6 161 82.6
BraA10t42387Z Brassica rapa HOM05D006046 ORTHO05D007580 2.2e-72 276.2 161 83.9
Oeu052589.3 Olea europaea HOM05D006046 ORTHO05D007580 2.2e-72 276.2 161 83.9
GSVIVG01028241001 Vitis vinifera HOM05D006046 ORTHO05D007580 2.9e-72 275.8 161 83.2
CDE11G0173 Ceratophyllum demersum HOM05D006046 ORTHO05D007580 3.8e-72 275.4 161 83.2
A10p01090 Brassica napus HOM05D006046 ORTHO05D007580 5.0e-72 275.0 161 83.2
TAR633G1601 Trochodendron aralioides HOM05D006046 ORTHO05D007580 5.0e-72 275.0 167 79.6
CiPaw.07G126200 Carya illinoinensis HOM05D006046 ORTHO05D007580 6.5e-72 274.6 159 83.6
TAR362G0326 Trochodendron aralioides HOM05D006046 ORTHO05D007580 6.5e-72 274.6 167 80.2
VMungo0720G0414 Vigna mungo HOM05D006046 ORTHO05D007580 6.5e-72 274.6 161 82.0
DCAR_002940 Daucus carota HOM05D006046 ORTHO05D007580 8.5e-72 274.2 161 83.2
Cpa.g.sc57.26 Carica papaya HOM05D006046 ORTHO05D007580 1.1e-71 273.9 167 80.2
CANSAT25G3010 Cannabis sativa HOM05D006046 ORTHO05D007580 1.4e-71 273.5 167 79.6
Hma1.2p1_0408F.1_g146250 Hydrangea macrophylla HOM05D006046 ORTHO05D007580 1.4e-71 273.5 167 79.0
Glyma.10G138600 Glycine max HOM05D006046 ORTHO05D007580 2.5e-71 272.7 161 82.6
Gohir.A11G105300 Gossypium hirsutum HOM05D006046 ORTHO05D007580 2.5e-71 272.7 159 83.6
Lalb_Chr02g0147181 Lupinus albus HOM05D006046 ORTHO05D007580 2.5e-71 272.7 161 81.4
Potri.002G186300 Populus trichocarpa HOM05D006046 ORTHO05D007580 2.5e-71 272.7 167 80.2
Ciclev10019590m.g Citrus clementina HOM05D006046 ORTHO05D007580 3.2e-71 272.3 167 79.6
COL.COLO4_23120 Corchorus olitorius HOM05D006046 ORTHO05D007580 3.2e-71 272.3 167 78.4
arahy.Tifrunner.gnm1.ann1.11DDVR Arachis hypogaea HOM05D006046 ORTHO05D007580 5.5e-71 271.6 161 82.0
C05p01130 Brassica napus HOM05D006046 ORTHO05D007580 5.5e-71 271.6 162 83.3
BolC5t28894H Brassica oleracea HOM05D006046 ORTHO05D007580 5.5e-71 271.6 162 83.3
CSS0022330 Camellia sinensis var. sinensis HOM05D006046 ORTHO05D007580 5.5e-71 271.6 167 80.8
Haze_05155 Corylus avellana HOM05D006046 ORTHO05D007580 5.5e-71 271.6 190 72.1
TPR.G3061 Trifolium pratense HOM05D006046 ORTHO05D007580 7.2e-71 271.2 161 82.0
Atru.chr5.852 Acer truncatum HOM05D006046 ORTHO05D007580 9.4e-71 270.8 167 79.6
TWI59G0782 Tripterygium wilfordii HOM05D006046 ORTHO05D007580 9.4e-71 270.8 167 77.8
CARHR249980 Cardamine hirsuta HOM05D006046 ORTHO05D007580 1.2e-70 270.4 167 79.6
Medtr1g085730 Medicago truncatula HOM05D006046 ORTHO05D007580 1.2e-70 270.4 161 81.4
Nn4g25300 Nelumbo nucifera HOM05D006046 ORTHO05D007580 1.6e-70 270.0 161 82.6
Sabra02G0148100 Salix brachista HOM05D006046 ORTHO05D007580 1.6e-70 270.0 167 79.6
Sabra02G0148500 Salix brachista HOM05D006046 ORTHO05D007580 1.6e-70 270.0 167 79.6
Actinidia21336 Actinidia chinensis HOM05D006046 ORTHO05D007580 2.1e-70 269.6 161 82.0
arahy.Tifrunner.gnm1.ann1.01TYUM Arachis hypogaea HOM05D006046 ORTHO05D007580 2.1e-70 269.6 161 81.4
QL12p035018 Quercus lobata HOM05D006046 ORTHO05D007580 2.1e-70 269.6 161 81.4
Psat6g158600 Pisum sativum HOM05D006046 ORTHO05D007580 3.6e-70 268.9 161 80.7
Sed0026667 Sechium edule HOM05D006046 ORTHO05D007580 3.6e-70 268.9 159 81.8
BcaC05g24615 Brassica carinata HOM05D006046 ORTHO05D007580 4.7e-70 268.5 162 82.7
Cc01_g21760 Coffea canephora HOM05D006046 ORTHO05D007580 4.7e-70 268.5 167 78.4
CsaV3_5G018640 Cucumis sativus L. HOM05D006046 ORTHO05D007580 4.7e-70 268.5 159 81.1
Potri.014G111600 Populus trichocarpa HOM05D006046 ORTHO05D007580 4.7e-70 268.5 167 79.0
Zm00001eb332380 Zea mays HOM05D006046 ORTHO05D007580 4.7e-70 268.5 167 78.4
MELO3C005189.2 Cucumis melo HOM05D006046 ORTHO05D007580 6.1e-70 268.1 159 81.1
Duzib133G1070 Durio zibethinus HOM05D006046 ORTHO05D007580 6.1e-70 268.1 167 79.0
Lj5g0023586 Lotus japonicus HOM05D006046 ORTHO05D007580 6.1e-70 268.1 161 81.4
PGR142G1127 Punica granatum HOM05D006046 ORTHO05D007580 6.1e-70 268.1 167 77.8
AUR62042113 Chenopodium quinoa HOM05D006046 ORTHO05D007580 1.4e-69 266.9 167 78.4
Ca_10238_v3 Cicer arietinum L. HOM05D006046 ORTHO05D007580 1.8e-69 266.5 167 77.2
ClCG01G007200 Citrullus lanatus HOM05D006046 ORTHO05D007580 1.8e-69 266.5 159 80.5
Os01g0286600 Oryza sativa ssp. japonica HOM05D006046 ORTHO05D007580 1.8e-69 266.5 167 77.8
Thecc.01G326200 Theobroma cacao HOM05D006046 ORTHO05D007580 1.8e-69 266.5 159 81.1
Phvul.007G208700 Phaseolus vulgaris HOM05D006046 ORTHO05D007580 2.3e-69 266.2 161 78.9
MD09G1291200 Malus domestica HOM05D006046 ORTHO05D007580 3.0e-69 265.8 163 79.8
EL10Ac2g02399 Beta vulgaris HOM05D006046 ORTHO05D007580 3.9e-69 265.4 167 78.4
MSTRG.18059 Avicennia marina HOM05D006046 ORTHO05D007580 5.2e-69 265.0 160 81.9
Eucgr.K00558 Eucalyptus grandis HOM05D006046 ORTHO05D007580 5.2e-69 265.0 167 78.4
Prupe.3G001700 Prunus persica HOM05D006046 ORTHO05D007580 5.2e-69 265.0 169 76.9
RcHm_v2.0_Chr3g0485661 Rosa chinensis HOM05D006046 ORTHO05D007580 8.8e-69 264.2 162 79.0
Lsat_1_v5_gn_9_7041 Lactuca sativa HOM05D006046 ORTHO05D007580 1.1e-68 263.8 167 76.0
FAN23G1049 Fragaria x ananassa HOM05D006046 ORTHO05D007580 2.6e-68 262.7 167 77.2
Sed0002893 Sechium edule HOM05D006046 ORTHO05D007580 2.6e-68 262.7 159 79.9
vmacro02355 Vaccinium macrocarpon HOM05D006046 ORTHO05D007580 2.6e-68 262.7 167 77.8
FvH4_1g26170 Fragaria vesca HOM05D006046 ORTHO05D007580 3.3e-68 262.3 163 78.5
FAN19G1511 Fragaria x ananassa HOM05D006046 ORTHO05D007580 3.3e-68 262.3 163 78.5
Hund03590 Selenicereus undatus HOM05D006046 ORTHO05D007580 3.3e-68 262.3 161 79.5
Lj1C7T2 Lonicera japonica HOM05D006046 ORTHO05D007580 5.7e-68 261.5 161 79.5
Ah.12g061390 Amaranthus hybridus HOM05D006046 ORTHO05D007580 7.4e-68 261.2 169 76.3
Duzib138G1207 Durio zibethinus HOM05D006046 ORTHO05D007580 9.7e-68 260.8 167 77.2
ATR0796G090 Amborella trichopoda HOM05D006046 ORTHO05D007580 2.2e-67 259.6 161 78.9
Rhsim01G0000700 Rhododendron simsii HOM05D006046 ORTHO05D007580 3.7e-67 258.8 167 76.6
HPP92_010589 Vanilla planifolia HOM05D006046 ORTHO05D007580 1.4e-66 256.9 164 78.0
Aa31LG5G1400 Aethionema arabicum HOM05D006046 ORTHO05D007580 2.4e-66 256.1 182 71.4
FAN28G0956 Fragaria x ananassa HOM05D006046 ORTHO05D007580 9.1e-66 254.2 167 75.4
AagrBONN_evm.TU.Sc2ySwM_368.2775 Anthoceros agrestis HOM05D006046 ORTHO05D007580 2.0e-65 253.1 160 75.6
HanXRQChr10g0286481 Helianthus annuus HOM05D006046 ORTHO05D007580 2.6e-65 252.7 167 74.9
Aqoxy5G02854 Aquilegia oxysepala HOM05D006046 ORTHO05D007580 5.9e-65 251.5 161 75.2
PSO210G0070 Papaver somniferum HOM05D006046 ORTHO05D007580 5.9e-65 251.5 159 76.7
ECA247G1361 Erigeron canadensis HOM05D006046 ORTHO05D007580 1.3e-64 250.4 159 76.1
PSO761G0347 Papaver somniferum HOM05D006046 ORTHO05D007580 2.2e-64 249.6 159 76.1
FAN26G1773 Fragaria x ananassa HOM05D006046 ORTHO05D007580 2.9e-64 249.2 163 76.1
Pp3c1_34400 Physcomitrium patens HOM05D006046 ORTHO05D007580 1.6e-62 243.4 161 74.5
Mapoly0001s0469 Marchantia polymorpha HOM05D006046 ORTHO05D007580 6.7e-61 238.0 161 71.4
CBR_g88557 Chara braunii HOM05D006046 ORTHO05D007580 1.3e-59 233.8 160 71.2
SMO356G0553 Selaginella moellendorffii HOM05D006046 ORTHO05D007580 3.7e-59 232.3 184 64.1
Cre09.g396300 Chlamydomonas reinhardtii HOM05D006046 ORTHO05D007580 2.0e-57 226.5 171 68.4
AUR62040510 Chenopodium quinoa HOM05D006046 ORTHO05D007580 1.1e-55 220.7 140 77.1
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 7.5e-52 208.0 126 81.7
Hma1.2p1_0408F.1_g146260 Hydrangea macrophylla HOM05D006046 ORTHO05D007580 1.1e-50 204.1 132 75.8
PRCOL_00002487 Prasinoderma coloniale HOM05D006046 ORTHO05D007580 3.7e-43 179.1 163 54.6
MCO14G379 Micromonas commoda HOM05D006046 ORTHO05D007580 1.2e-41 174.1 161 54.7
arahy.Tifrunner.gnm1.ann1.45WRUP Arachis hypogaea HOM05D006046 ORTHO05D007580 3.5e-33 146.0 97 75.3
Glyma.02G007166 Glycine max HOM05D006046 ORTHO05D007580 5.8e-28 128.6 80 76.2
CDE05G0285 Ceratophyllum demersum HOM05D006046 ORTHO05D007580 3.2e-26 122.9 73 82.2
SEGI_28664 Sequoiadendron giganteum HOM05D006046 ORTHO05D007580 7.0e-26 121.7 78 74.4
arahy.Tifrunner.gnm1.ann1.X26H0K Arachis hypogaea HOM05D006046 ORTHO05D007580 1.6e-25 120.6 142 50.0
Sabra14G0082000 Salix brachista HOM05D006046 ORTHO05D007580 1.1e-23 114.4 138 50.0
AUR62044205 Chenopodium quinoa HOM05D006046 ORTHO05D007580 5.6e-23 112.1 105 60.0
Os10g0473800 Oryza sativa ssp. japonica HOM05D006046 ORTHO05D007580 1.8e-21 107.1 66 72.7
Sp1g01440 Schrenkiella parvula HOM05D006046 ORTHO05D007580 2.3e-16 90.1 54 79.6
THA.LOC104802380 Tarenaya hassleriana HOM05D007163 ORTHO05D009213 1.0e-08 64.7 95 36.8
CARHR199120 Cardamine hirsuta HOM05D007163 ORTHO05D009213 3.9e-08 62.8 97 39.2
Carub.0006s1242 Capsella rubella HOM05D007163 ORTHO05D009213 6.6e-08 62.0 96 37.5
AUR62018256 Chenopodium quinoa HOM05D007163 ORTHO05D009213 6.6e-08 62.0 107 33.6
HanXRQChr09g0256071 Helianthus annuus HOM05D007163 ORTHO05D009213 6.6e-08 62.0 94 37.2
BcaB08g36967 Brassica carinata HOM05D007163 ORTHO05D009213 8.6e-08 61.6 96 37.5
Lalb_Chr14g0363061 Lupinus albus HOM05D007163 ORTHO05D009213 8.6e-08 61.6 115 33.9
Lju41C50G12 Lonicera japonica HOM05D007163 ORTHO05D009213 1.1e-07 61.2 97 37.1
Sp6g29810 Schrenkiella parvula HOM05D007163 ORTHO05D009213 1.1e-07 61.2 96 37.5
COL.COLO4_08751 Corchorus olitorius HOM05D007163 ORTHO05D009213 1.5e-07 60.8 107 35.5
Aa31LG11G15010 Aethionema arabicum HOM05D007163 ORTHO05D009213 1.9e-07 60.5 95 35.8
AT5G14220 Arabidopsis thaliana HOM05D007163 ORTHO05D009213 1.9e-07 60.5 96 37.5
A10p24250 Brassica napus HOM05D007163 ORTHO05D009213 1.9e-07 60.5 95 34.7
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 1.9e-07 60.5 95 34.7
CSS0007697 Camellia sinensis var. sinensis HOM05D007163 ORTHO05D009213 1.9e-07 60.5 98 38.8
Duzib264G0233 Durio zibethinus HOM05D007163 ORTHO05D009213 1.9e-07 60.5 94 35.1
Thhalv10013706m.g Eutrema salsugineum HOM05D007163 ORTHO05D009213 1.9e-07 60.5 96 37.5
AL6G24890 Arabidopsis lyrata HOM05D007163 ORTHO05D009213 2.5e-07 60.1 96 35.4
MBI11_g06765_MAGBIO Magnolia biondii HOM05D007163 ORTHO05D009213 2.5e-07 60.1 94 33.0
BcaC04g19052 Brassica carinata HOM05D007163 ORTHO05D009213 3.3e-07 59.7 96 37.5
CANSAT64G2763 Cannabis sativa HOM05D007163 ORTHO05D009213 3.3e-07 59.7 98 34.7
DCAR_021768 Daucus carota HOM05D007163 ORTHO05D009213 3.3e-07 59.7 56 50.0
Lsat_1_v5_gn_4_185401 Lactuca sativa HOM05D007163 ORTHO05D009213 3.3e-07 59.7 95 36.8
Eucgr.J02313 Eucalyptus grandis HOM05D007163 ORTHO05D009213 5.6e-07 58.9 85 41.2
QL02p071962 Quercus lobata HOM05D007163 ORTHO05D009213 5.6e-07 58.9 95 35.8
CDE08G0784 Ceratophyllum demersum HOM05D007163 ORTHO05D009213 7.3e-07 58.5 100 36.0
TAR374G1101 Trochodendron aralioides HOM05D007163 ORTHO05D009213 7.3e-07 58.5 95 35.8
C09p62940 Brassica napus HOM05D007163 ORTHO05D009213 9.6e-07 58.2 96 36.5
BolC9t59131H Brassica oleracea HOM05D007163 ORTHO05D009213 9.6e-07 58.2 96 36.5
Manes.15G158600 Manihot esculenta HOM05D007163 ORTHO05D009213 1.2e-06 57.8 99 34.3
Sc03g0006730 Simmondsia chinensis HOM05D007163 ORTHO05D009213 1.6e-06 57.4 97 33.0
Dinv25673 Davidia involucrata HOM05D007163 ORTHO05D009213 3.6e-06 56.2 95 34.7
Nn3g16518 Nelumbo nucifera HOM05D007163 ORTHO05D009213 4.7e-06 55.8 95 34.7


User provided reference genes

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