Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.1e-257 891.7 418 100.0
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.0e-195 686.8 416 81.2
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 7.2e-189 664.1 421 77.0
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 4.1e-184 648.3 409 78.0
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 9.4e-181 637.1 409 76.0
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 1.2e-180 636.7 409 76.5
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 1.0e-179 633.6 408 76.7
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 4.4e-170 601.7 406 70.9
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 6.6e-166 587.8 406 70.7
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 6.6e-166 587.8 410 68.5
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 2.1e-164 582.8 410 68.8
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 8.0e-164 580.9 406 68.5
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 8.0e-164 580.9 408 69.6
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 1.8e-163 579.7 408 68.1
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 8.9e-163 577.4 414 68.4
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 2.0e-162 576.2 407 69.3
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 2.6e-162 575.9 402 68.7
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 2.6e-162 575.9 406 67.7
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 2.6e-162 575.9 410 68.8
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 4.4e-162 575.1 406 68.5
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 7.5e-162 574.3 406 67.0
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 1.7e-161 573.2 408 67.6
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 1.7e-161 573.2 410 68.0
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 2.2e-161 572.8 409 68.0
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 3.7e-161 572.0 408 67.2
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 4.9e-161 571.6 406 67.7
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 8.3e-161 570.9 408 67.2
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 2.4e-160 569.3 414 66.7
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.2e-160 568.9 408 68.9
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 5.4e-160 568.2 406 67.5
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 9.2e-160 567.4 410 66.1
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 1.6e-159 566.6 406 67.2
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 4.6e-159 565.1 406 66.7
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 5.9e-159 564.7 406 68.2
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 7.8e-159 564.3 408 66.2
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 7.8e-159 564.3 400 66.5
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 1.7e-158 563.1 421 66.3
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 1.7e-158 563.1 408 67.2
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 3.0e-158 562.4 408 67.6
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 3.0e-158 562.4 406 65.5
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 3.0e-158 562.4 412 65.8
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.9e-158 562.0 408 67.6
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 5.0e-158 561.6 406 68.0
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 5.0e-158 561.6 409 66.3
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 6.6e-158 561.2 406 66.3
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 8.6e-158 560.8 406 66.7
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.1e-157 560.5 406 66.7
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 1.9e-157 559.7 409 65.0
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 3.3e-157 558.9 416 65.6
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 5.6e-157 558.1 400 67.2
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 9.5e-157 557.4 410 66.3
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 9.5e-157 557.4 406 65.0
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 2.1e-156 556.2 408 65.9
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 6.2e-156 554.7 408 64.5
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.0e-156 554.3 406 64.5
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 8.0e-156 554.3 408 65.7
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 8.0e-156 554.3 406 66.7
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 1.0e-155 553.9 407 64.6
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.4e-155 553.5 406 64.5
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.4e-155 553.5 408 65.7
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 1.8e-155 553.1 404 65.8
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 1.8e-155 553.1 408 65.7
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.2e-154 550.4 413 66.1
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 2.6e-154 549.3 407 64.1
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 4.4e-154 548.5 415 64.1
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 4.4e-154 548.5 409 65.5
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 4.4e-154 548.5 350 73.7
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 9.8e-154 547.4 406 64.8
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.3e-153 547.0 424 63.2
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 2.2e-153 546.2 408 65.2
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.1e-152 543.9 406 65.0
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 3.2e-152 542.3 408 64.7
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 7.0e-152 541.2 406 63.5
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 9.2e-152 540.8 409 62.6
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.0e-151 539.7 369 69.9
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 6.0e-151 538.1 404 63.1
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 6.0e-151 538.1 418 63.6
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 1.7e-150 536.6 405 63.0
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 1.7e-150 536.6 407 63.9
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 2.3e-150 536.2 405 64.2
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 3.0e-150 535.8 404 63.6
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 1.5e-149 533.5 407 63.1
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 4.3e-149 531.9 402 63.2
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 4.3e-149 531.9 407 61.9
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 9.5e-149 530.8 402 62.9
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 1.6e-148 530.0 410 63.9
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 2.1e-148 529.6 403 63.8
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 2.8e-148 529.3 404 62.6
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 6.2e-148 528.1 403 63.3
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 8.1e-148 527.7 403 62.5
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 1.1e-147 527.3 437 59.7
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 3.1e-147 525.8 403 62.8
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 8.9e-147 524.2 405 61.2
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 1.2e-146 523.9 403 62.5
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 1.2e-146 523.9 406 61.6
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 2.6e-146 522.7 413 63.0
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 2.2e-145 519.6 404 62.1
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.2e-145 519.6 405 63.0
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 4.1e-144 515.4 469 56.5
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 4.6e-143 511.9 409 62.8
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 1.3e-142 510.4 329 71.7
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 6.6e-142 508.1 492 53.7
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 1.9e-141 506.5 408 62.5
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 3.3e-141 505.8 409 61.1
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 2.1e-140 503.1 404 60.9
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 2.3e-139 499.6 416 58.7
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 4.0e-139 498.8 403 60.0
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 1.9e-136 490.0 437 57.0
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.5e-133 480.3 378 61.1
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 3.6e-132 475.7 309 73.8
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 6.2e-132 474.9 405 58.3
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 1.8e-131 473.4 421 57.0
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 2.2e-129 466.5 408 55.9
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 2.4e-128 463.0 404 55.0
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 5.4e-128 461.8 402 56.5
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 1.5e-125 453.8 407 54.8
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 2.5e-125 453.0 411 54.5
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 3.0e-118 429.5 294 68.0
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 8.7e-118 427.9 403 54.6
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 1.8e-115 420.2 418 52.6
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 4.2e-104 382.5 297 63.3
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 1.3e-102 377.5 386 51.6
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.1e-88 331.3 377 49.9
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.1e-85 321.2 245 62.9
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.4e-83 313.5 253 60.5
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.1e-83 313.2 229 64.2
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.7e-76 290.8 416 41.1
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.8e-76 289.3 232 59.9
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 6.3e-76 288.9 417 40.5
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 7.2e-72 275.4 431 38.7
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 9.4e-72 275.0 403 40.0
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.4e-67 261.2 194 62.9
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 2.2e-60 237.3 171 65.5
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 4.1e-59 233.0 147 71.4
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.3e-57 228.0 165 63.6
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 3.9e-41 173.3 94 79.8
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.7e-36 157.9 497 26.2
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 9.5e-32 142.1 94 68.1
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 2.8e-31 140.6 94 67.0
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 5.2e-30 136.3 161 50.9
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 8.3e-28 129.0 116 58.6
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 1.9e-24 117.9 92 59.8
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 1.6e-18 98.2 371 25.3
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.1e-16 92.0 160 36.2
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 2.1e-15 87.8 47 83.0
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 1.7e-12 78.2 40 82.5
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 2.2e-12 77.8 48 75.0
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 2.2e-12 77.8 43 86.0
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 2.1e-07 61.2 30 73.3
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 5.3e-06 56.6 29 69.0


User provided reference genes

Program Settings