Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.5e-257 892.1 655 100.0
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 2.8e-139 500.0 655 73.4
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 4.1e-138 496.1 655 72.4
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 1.7e-136 490.7 655 72.5
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.3e-120 438.0 602 74.8
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 3.6e-118 429.9 315 84.8
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 1.5e-116 424.5 592 70.9
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 2.7e-113 413.7 594 69.5
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.2e-112 410.6 595 69.9
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 3.6e-110 403.3 655 64.6
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 2.0e-108 397.5 653 64.3
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 7.5e-108 395.6 319 74.3
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 1.7e-107 394.4 651 63.3
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 2.8e-107 393.7 590 65.4
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 3.5e-105 386.7 592 67.6
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 3.5e-105 386.7 323 71.5
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 7.7e-105 385.6 593 68.8
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 1.0e-104 385.2 595 68.6
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 3.8e-104 383.3 593 61.6
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 8.6e-104 382.1 595 68.2
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.9e-103 380.9 653 63.4
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 2.1e-102 377.5 594 66.8
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 4.7e-102 376.3 593 66.4
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.2e-100 371.7 591 66.7
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.1e-98 365.2 655 62.0
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 2.7e-97 360.5 590 65.8
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 3.0e-96 357.1 655 61.1
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 3.3e-95 353.6 594 66.3
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 4.3e-95 353.2 593 65.8
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.0e-93 348.6 594 65.2
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.4e-93 348.2 655 60.6
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 1.8e-93 347.8 597 46.2
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 2.3e-93 347.4 659 56.3
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 8.9e-93 345.5 653 47.0
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 8.9e-93 345.5 591 64.6
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 2.0e-92 344.4 609 60.1
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 2.0e-92 344.4 597 63.5
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 5.8e-92 342.8 658 55.9
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 7.5e-92 342.4 593 61.0
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 9.8e-92 342.0 593 58.7
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 2.9e-91 340.5 590 63.7
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 3.7e-91 340.1 635 62.4
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 4.1e-90 336.7 651 59.6
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 7.0e-90 335.9 658 55.3
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 1.2e-89 335.1 593 53.5
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 6.0e-89 332.8 595 61.0
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 6.0e-89 332.8 596 63.1
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 2.3e-88 330.9 655 59.1
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 3.0e-88 330.5 594 59.6
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 8.6e-88 328.9 644 50.9
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 6.2e-86 322.8 322 63.4
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 1.8e-85 321.2 594 61.1
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 2.3e-85 320.9 592 63.3
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 8.9e-85 318.9 514 65.8
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 2.2e-83 314.3 594 61.8
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 3.7e-83 313.5 519 56.1
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 8.3e-83 312.4 519 66.3
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 1.4e-82 311.6 638 55.3
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 1.4e-82 311.6 655 54.8
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 9.2e-82 308.9 653 58.5
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 1.6e-81 308.1 299 66.2
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 3.0e-80 303.9 597 62.1
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 5.1e-80 303.1 238 65.1
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.2e-78 298.5 345 57.7
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 1.6e-78 298.1 595 62.0
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 2.1e-78 297.7 319 61.1
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 2.1e-78 297.7 566 58.8
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 4.7e-78 296.6 519 63.4
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 8.1e-78 295.8 655 57.3
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 1.1e-77 295.4 655 57.9
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 2.3e-77 294.3 297 65.0
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 8.9e-77 292.4 634 59.1
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.2e-75 287.7 592 61.3
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 2.9e-75 287.3 663 53.2
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 1.9e-74 284.6 301 61.8
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 1.9e-74 284.6 315 61.6
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 3.2e-74 283.9 596 60.7
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 7.1e-74 282.7 639 59.6
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 2.3e-72 277.7 598 58.7
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 4.3e-71 273.5 618 45.5
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 5.6e-71 273.1 312 58.0
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 1.2e-70 271.9 545 56.7
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 1.6e-70 271.6 318 60.1
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 1.6e-70 271.6 415 49.2
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 1.8e-69 268.1 311 59.2
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 2.4e-69 267.7 592 60.1
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 8.9e-69 265.8 592 60.0
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 1.5e-68 265.0 655 52.4
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 2.0e-68 264.6 327 51.1
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 3.8e-67 260.4 572 60.0
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 6.4e-67 259.6 590 56.6
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 8.4e-67 259.2 325 50.8
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 5.4e-66 256.5 655 55.0
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 4.6e-65 253.4 606 51.8
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 1.9e-63 248.1 318 54.1
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 4.8e-62 243.4 463 64.1
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 4.8e-62 243.4 313 54.0
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 1.7e-59 235.0 592 59.5
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 1.7e-59 235.0 632 48.9
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 1.1e-58 232.3 317 55.5
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 6.9e-53 213.0 574 54.4
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 3.4e-52 210.7 198 68.7
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 9.0e-45 186.0 144 65.3
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 9.3e-42 176.0 150 58.0
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 6.0e-41 173.3 314 40.8
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 1.5e-39 168.7 245 41.2
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 3.1e-37 161.0 114 75.4
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 3.0e-32 144.4 143 72.0
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 3.0e-32 144.4 143 72.0
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 3.0e-32 144.4 143 72.0
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.1e-31 142.5 121 59.5
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 2.2e-30 138.3 150 51.3
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 2.9e-19 101.3 73 63.0
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 5.0e-19 100.5 102 80.4
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 2.5e-18 98.2 294 33.3
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 2.1e-17 95.1 236 46.2
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 6.7e-16 90.1 56 76.8
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 1.5e-15 89.0 53 77.4
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 9.7e-15 86.3 98 74.5
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 6.3e-14 83.6 53 71.7
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 5.3e-13 80.5 53 71.7
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 5.3e-13 80.5 53 71.7
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 5.3e-13 80.5 53 71.7
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 1.6e-12 79.0 53 69.8
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 3.8e-11 74.3 46 80.4
Gorai.009G385200 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.4e-08 65.9 144 36.1
Thecc.07G078700 Theobroma cacao HOM05D006220 ORTHO05D007590 1.4e-08 65.9 60 55.0
Gohir.A04G033100 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.3e-08 65.1 184 31.5
Gohir.D05G349700 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.0e-08 64.7 144 34.7
Gorai.009G379600 Gossypium raimondii HOM05D000101 ORTHO05D000089 4.0e-08 64.3 144 34.7
Prupe.1G542800 Prunus persica HOM05D000092 ORTHO05D000042 6.7e-08 63.5 169 36.1
Duzib268G1572 Durio zibethinus HOM05D000101 ORTHO05D000089 2.0e-07 62.0 144 33.3
Atru.chr2.3822 Acer truncatum HOM05D000101 ORTHO05D000089 3.3e-07 61.2 142 36.6
Gohir.A04G033550 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.4e-07 60.8 152 32.2
Gorai.009G379800 Gossypium raimondii HOM05D000101 ORTHO05D000089 4.4e-07 60.8 171 29.8
Potri.019G113701 Populus trichocarpa HOM05D000005 ORTHO05D000012 5.7e-07 60.5 147 34.0
Gorai.009G380000 Gossypium raimondii HOM05D000101 ORTHO05D000089 7.5e-07 60.1 131 32.8
Gohir.D05G350200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 9.7e-07 59.7 131 32.8
vmacro01921 Vaccinium macrocarpon HOM05D000101 ORTHO05D000089 9.7e-07 59.7 159 32.1
Duzib268G0075 Durio zibethinus HOM05D000101 ORTHO05D000089 1.3e-06 59.3 134 32.8
Gohir.D05G360300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.3e-06 59.3 150 31.3
Gohir.D05G354500 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.7e-06 58.9 143 32.2
Gohir.D11G298200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.7e-06 58.9 142 33.8
Gorai.009G432400 Gossypium raimondii HOM05D000101 ORTHO05D000089 2.2e-06 58.5 127 32.3
MD07G1260700 Malus domestica HOM05D003506 ORTHO05D000012 2.2e-06 58.5 251 32.3
vmacro04727 Vaccinium macrocarpon HOM05D000101 ORTHO05D000089 2.2e-06 58.5 160 28.1
COL.COLO4_32230 Corchorus olitorius HOM05D000101 ORTHO05D000089 2.8e-06 58.2 142 33.1
Duzib268G1585 Durio zibethinus HOM05D000101 ORTHO05D000089 2.8e-06 58.2 163 31.3
Gorai.009G381500 Gossypium raimondii HOM05D000101 ORTHO05D000089 2.8e-06 58.2 138 31.9
Gorai.009G430600 Gossypium raimondii HOM05D000101 ORTHO05D000089 2.8e-06 58.2 128 35.2
vmacro04725 Vaccinium macrocarpon HOM05D000101 ORTHO05D000089 3.7e-06 57.8 96 35.4
Duzib268G0390 Durio zibethinus HOM05D000053 ORTHO05D000448 6.3e-06 57.0 319 29.5
Duzib268G0689 Durio zibethinus HOM05D000101 ORTHO05D000089 6.3e-06 57.0 142 32.4
Gorai.007G323100 Gossypium raimondii HOM05D000101 ORTHO05D000089 6.3e-06 57.0 142 33.1
Gorai.009G386200 Gossypium raimondii HOM05D000101 ORTHO05D000089 6.3e-06 57.0 185 28.6
MBI18_g10801_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D013396 6.3e-06 57.0 191 29.3
Actinidia19992 Actinidia chinensis HOM05D000101 ORTHO05D000089 8.2e-06 56.6 145 31.7
Duzib268G1464 Durio zibethinus HOM05D000101 ORTHO05D000089 8.2e-06 56.6 142 32.4
Gorai.009G383200 Gossypium raimondii HOM05D000101 ORTHO05D000089 8.2e-06 56.6 140 32.9
vmacro01920 Vaccinium macrocarpon HOM05D000101 ORTHO05D000089 8.2e-06 56.6 153 30.7


User provided reference genes

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