Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.3e-118 429.9 229 100.0
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.1e-50 204.1 129 89.1
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 7.2e-50 201.4 129 86.0
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 7.2e-50 201.4 129 86.0
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 6.8e-48 194.9 129 85.3
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 1.2e-47 194.1 129 83.7
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 1.2e-47 194.1 129 83.7
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 1.2e-47 194.1 129 82.9
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.2e-47 194.1 129 84.5
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 2.0e-47 193.4 129 83.7
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 2.6e-47 193.0 130 83.8
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 4.4e-47 192.2 129 83.7
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 4.4e-47 192.2 129 83.7
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 4.4e-47 192.2 129 83.7
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 7.5e-47 191.4 129 82.9
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 7.5e-47 191.4 129 83.7
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 1.7e-46 190.3 129 82.2
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 2.2e-46 189.9 129 82.9
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 2.2e-46 189.9 129 82.9
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 4.9e-46 188.7 129 82.2
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 4.9e-46 188.7 127 81.9
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 4.9e-46 188.7 128 82.8
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 6.3e-46 188.3 127 81.9
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 1.1e-45 187.6 129 82.2
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 1.4e-45 187.2 129 79.8
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 3.2e-45 186.0 129 79.8
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 3.2e-45 186.0 129 81.4
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 4.1e-45 185.7 129 79.1
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 4.1e-45 185.7 129 80.6
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 5.4e-45 185.3 129 82.2
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 7.0e-45 184.9 131 80.2
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 1.6e-44 183.7 127 81.1
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 1.6e-44 183.7 127 81.1
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 1.6e-44 183.7 129 82.2
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 2.7e-44 183.0 126 81.0
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 3.5e-44 182.6 128 81.2
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 3.5e-44 182.6 129 79.8
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 7.8e-44 181.4 132 79.5
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 7.8e-44 181.4 130 79.2
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 1.0e-43 181.0 128 79.7
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 1.0e-43 181.0 129 78.3
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 1.7e-43 180.3 130 78.5
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 1.7e-43 180.3 127 78.0
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 3.9e-43 179.1 133 77.4
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 3.9e-43 179.1 129 77.5
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 3.9e-43 179.1 129 80.6
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 5.0e-43 178.7 133 78.9
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 6.6e-43 178.3 129 79.8
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 6.6e-43 178.3 133 77.4
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 6.6e-43 178.3 133 77.4
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 6.6e-43 178.3 150 71.3
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 1.1e-42 177.6 129 78.3
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 1.1e-42 177.6 116 86.2
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 1.9e-42 176.8 127 77.2
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 1.9e-42 176.8 132 78.8
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 1.9e-42 176.8 132 78.8
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 1.9e-42 176.8 133 75.9
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 2.5e-42 176.4 129 77.5
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 2.5e-42 176.4 132 78.8
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 3.3e-42 176.0 131 79.4
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 3.3e-42 176.0 168 63.7
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 4.3e-42 175.6 130 77.7
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 4.3e-42 175.6 116 85.3
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 5.6e-42 175.3 132 78.0
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 7.3e-42 174.9 146 72.6
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 1.2e-41 174.1 129 76.7
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 1.6e-41 173.7 127 79.5
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 2.8e-41 172.9 129 76.7
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 3.6e-41 172.6 117 82.1
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 4.7e-41 172.2 116 84.5
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 8.0e-41 171.4 129 76.0
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 8.0e-41 171.4 116 83.6
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 2.3e-40 169.9 130 78.5
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 3.1e-40 169.5 130 77.7
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 1.5e-39 167.2 129 74.4
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 2.0e-39 166.8 132 74.2
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 5.8e-39 165.2 121 77.7
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 7.5e-39 164.9 122 77.0
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 7.5e-39 164.9 122 77.0
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 9.8e-39 164.5 120 78.3
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 9.8e-39 164.5 126 75.4
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 9.8e-39 164.5 126 74.6
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 1.3e-38 164.1 129 74.4
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 1.7e-38 163.7 128 75.8
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 3.7e-38 162.5 122 76.2
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 3.7e-38 162.5 117 81.2
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 4.9e-38 162.2 127 73.2
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 4.9e-38 162.2 116 77.6
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 4.9e-38 162.2 133 75.2
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 4.9e-38 162.2 128 73.4
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 6.4e-38 161.8 119 79.8
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 8.3e-38 161.4 114 78.9
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 1.4e-37 160.6 133 72.9
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 2.4e-37 159.8 116 77.6
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 4.1e-37 159.1 116 77.6
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 9.2e-37 157.9 112 79.5
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 4.6e-36 155.6 129 73.6
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 7.8e-36 154.8 116 77.6
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.3e-35 153.3 131 73.3
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.3e-35 153.3 131 73.3
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.3e-35 153.3 130 74.6
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 2.3e-35 153.3 129 72.9
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 6.6e-35 151.8 132 71.2
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 1.5e-34 150.6 152 63.2
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.2e-33 147.5 132 70.5
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 4.7e-33 145.6 132 69.7
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 8.0e-33 144.8 112 74.1
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 1.8e-32 143.7 110 76.4
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 4.0e-32 142.5 132 68.2
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 6.8e-32 141.7 116 74.1
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 6.8e-32 141.7 114 72.8
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 4.4e-31 139.0 128 71.1
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 5.8e-31 138.7 132 67.4
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 6.4e-30 135.2 142 61.3
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 2.4e-29 133.3 119 70.6
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 3.5e-28 129.4 131 63.4
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 4.6e-28 129.0 112 66.1
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.0e-27 127.9 94 76.6
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 2.1e-25 120.2 134 58.2
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 8.1e-25 118.2 82 80.5
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 1.4e-24 117.5 125 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 3.1e-24 116.3 80 78.8
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 3.1e-24 116.3 86 76.7
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.0e-23 113.6 83 77.1
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 1.3e-22 110.9 68 89.7
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 2.9e-22 109.8 66 90.9
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 2.9e-22 109.8 270 37.4
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 4.9e-22 109.0 133 53.4
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 6.4e-22 108.6 134 56.7
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 9.2e-21 104.8 68 85.3
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 5.1e-19 99.0 121 52.1
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 8.6e-19 98.2 68 80.9
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 1.1e-18 97.8 83 63.9
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.5e-18 97.4 60 90.0
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 3.4e-15 86.3 54 85.2
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 1.3e-14 84.3 54 85.2
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 6.4e-14 82.0 60 73.3
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 2.4e-13 80.1 87 50.6
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 3.2e-13 79.7 64 71.9
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 1.2e-12 77.8 61 68.9
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 4.6e-12 75.9 75 68.0
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 5.6e-10 68.9 110 44.5
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 6.4e-06 55.5 48 68.8


User provided reference genes

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