Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000197g0130 Nicotiana tabacum HOM05D000078 ORTHO05D000025 3.9e-48 194.5 100 100.0
Nitab4.5_0005233g0040 Nicotiana tabacum HOM05D000078 ORTHO05D000025 2.7e-41 171.8 100 89.0
Nitab4.5_0004560g0020 Nicotiana tabacum HOM05D000078 ORTHO05D000025 3.6e-38 161.4 100 83.0
Nitab4.5_0000412g0010 Nicotiana tabacum HOM05D000078 ORTHO05D000025 1.3e-16 89.7 102 56.9
Solyc06g035700.1 Solanum lycopersicum HOM05D000078 ORTHO05D000025 2.3e-16 89.0 100 59.0
Peaxi162Scf00557g00051 Petunia axillaris HOM05D000078 ORTHO05D000025 1.5e-15 86.3 101 57.4
CAN.G28.15 Capsicum annuum HOM05D000078 ORTHO05D000025 5.6e-15 84.3 107 56.1
Sopen06g011450 Solanum pennellii HOM05D000078 ORTHO05D020272 4.8e-14 81.3 100 55.0
Nitab4.5_0000953g0020 Nicotiana tabacum HOM05D000078 ORTHO05D000025 8.1e-14 80.5 102 53.9
Duzib205G0158 Durio zibethinus HOM05D000078 ORTHO05D000025 1.4e-13 79.7 105 47.6
vmacro09861 Vaccinium macrocarpon HOM05D000078 ORTHO05D000025 2.4e-13 79.0 97 45.4
Cc02_g03420 Coffea canephora HOM05D000078 ORTHO05D000025 3.1e-13 78.6 113 47.8
Dinv35174 Davidia involucrata HOM05D000078 ORTHO05D000025 3.1e-13 78.6 102 51.0
TAR374G0230 Trochodendron aralioides HOM05D000078 ORTHO05D000025 4.0e-13 78.2 100 48.0
Peaxi162Scf00054g00211 Petunia axillaris HOM05D000078 ORTHO05D000025 6.9e-13 77.4 101 50.5
Potri.015G136300 Populus trichocarpa HOM05D000078 ORTHO05D000025 1.2e-12 76.6 103 48.5
vmacro09862 Vaccinium macrocarpon HOM05D000078 ORTHO05D000025 1.5e-12 76.3 102 45.1
Thecc.03G170000 Theobroma cacao HOM05D000078 ORTHO05D000025 2.0e-12 75.9 105 45.7
Eucgr.A02817 Eucalyptus grandis HOM05D000078 ORTHO05D000025 3.4e-12 75.1 103 47.6
VMungo0720G0596 Vigna mungo HOM05D000078 ORTHO05D000025 1.0e-11 73.6 101 50.5
Hma1.2p1_0270F.1_g108490 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 1.3e-11 73.2 103 48.5
PGR042G3712 Punica granatum HOM05D000078 ORTHO05D000025 1.3e-11 73.2 113 46.9
TAR656G0003 Trochodendron aralioides HOM05D000078 ORTHO05D000025 1.3e-11 73.2 98 46.9
CSS0026885 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 1.7e-11 72.8 98 46.9
PGSC0003DMG400025282 Solanum tuberosum HOM05D000078 ORTHO05D000025 2.9e-11 72.0 101 50.5
Gohir.A09G179800 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.9e-11 71.2 109 43.1
Gohir.D09G175100 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.9e-11 71.2 109 43.1
Gorai.006G197200 Gossypium raimondii HOM05D000078 ORTHO05D000025 4.9e-11 71.2 109 43.1
MBI12_g25030_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D000025 4.9e-11 71.2 105 43.8
Manes.14G029500 Manihot esculenta HOM05D000078 ORTHO05D000025 4.9e-11 71.2 102 49.0
Sabra15G0147800 Salix brachista HOM05D000078 ORTHO05D000025 4.9e-11 71.2 107 46.7
Prupe.2G289600 Prunus persica HOM05D000078 ORTHO05D000025 6.5e-11 70.9 103 45.6
TAR374G1564 Trochodendron aralioides HOM05D000078 ORTHO05D000025 6.5e-11 70.9 100 47.0
CiPaw.04G067900 Carya illinoinensis HOM05D000078 ORTHO05D000025 8.4e-11 70.5 102 48.0
Duzib068G0209 Durio zibethinus HOM05D000078 ORTHO05D000025 8.4e-11 70.5 106 44.3
Gohir.A12G225000 Gossypium hirsutum HOM05D000078 ORTHO05D000025 8.4e-11 70.5 103 42.7
RcHm_v2.0_Chr7g0199231 Rosa chinensis HOM05D000078 ORTHO05D000025 1.4e-10 69.7 112 42.0
Sabra12G0100800 Salix brachista HOM05D000078 ORTHO05D000025 1.4e-10 69.7 101 46.5
CSS0032541 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 1.9e-10 69.3 103 43.7
Gohir.D12G227700 Gossypium hirsutum HOM05D000078 ORTHO05D000025 1.9e-10 69.3 98 40.8
Gorai.008G243700 Gossypium raimondii HOM05D000078 ORTHO05D000025 1.9e-10 69.3 98 40.8
Hma1.2p1_0371F.1_g138150 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 1.9e-10 69.3 104 46.2
Lj1P992T52 Lonicera japonica HOM05D000078 ORTHO05D000025 1.9e-10 69.3 100 49.0
FAN05G1489 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.5e-10 68.9 54 61.1
FAN05G4556 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.5e-10 68.9 54 61.1
FAN07G1265 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.5e-10 68.9 54 61.1
FAN24G1925 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.5e-10 68.9 54 61.1
FAN27G0410 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.5e-10 68.9 54 61.1
TAR636G1496 Trochodendron aralioides HOM05D000078 ORTHO05D000025 2.5e-10 68.9 100 43.0
MSTRG.25574 Avicennia marina HOM05D000078 ORTHO05D000025 3.2e-10 68.6 106 43.4
FvH4_5g01460 Fragaria vesca HOM05D000078 ORTHO05D000025 3.2e-10 68.6 115 41.7
Solyc08g080290.4 Solanum lycopersicum HOM05D000078 ORTHO05D000025 3.2e-10 68.6 107 44.9
FAN08G1516 Fragaria x ananassa HOM05D000078 ORTHO05D000025 4.2e-10 68.2 115 40.0
Nn6g34265 Nelumbo nucifera HOM05D000078 ORTHO05D000025 4.2e-10 68.2 107 43.9
Phvul.007G066520 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 4.2e-10 68.2 101 48.5
TWI23G0793 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 4.2e-10 68.2 100 45.0
MSTRG.12022 Avicennia marina HOM05D000078 ORTHO05D000025 5.5e-10 67.8 102 44.1
Peaxi162Scf00714g00620 Petunia axillaris HOM05D000078 ORTHO05D000025 5.5e-10 67.8 103 44.7
ClCG01G003110 Citrullus lanatus HOM05D000078 ORTHO05D000025 7.1e-10 67.4 103 45.6
Lj8C238G7 Lonicera japonica HOM05D001697 ORTHO05D000025 7.1e-10 67.4 57 56.1
MBI04_g37685_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D000025 7.1e-10 67.4 103 44.7
CiPaw.11G141300 Carya illinoinensis HOM05D000078 ORTHO05D000025 9.3e-10 67.0 104 44.2
Lsat_1_v5_gn_2_130801 Lactuca sativa HOM05D000078 ORTHO05D000025 9.3e-10 67.0 98 44.9
TWI39G0653 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 9.3e-10 67.0 99 45.5
Atru.chr1.531 Acer truncatum HOM05D000078 ORTHO05D000025 1.6e-09 66.2 111 46.8
FAN10G0252 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.1e-09 65.9 113 43.4
FAN10G1561 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.1e-09 65.9 113 43.4
FAN21G2185 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.7e-09 65.5 54 59.3
FAN24G1465 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.7e-09 65.5 54 59.3
MD01G1196300 Malus domestica HOM05D000078 ORTHO05D000025 3.5e-09 65.1 105 44.8
TAR375G1021 Trochodendron aralioides HOM05D000078 ORTHO05D000025 3.5e-09 65.1 100 44.0
VMungo1215G1099 Vigna mungo HOM05D000078 ORTHO05D000025 3.5e-09 65.1 99 46.5
CiPaw.12G098500 Carya illinoinensis HOM05D000078 ORTHO05D000025 4.6e-09 64.7 105 44.8
Thecc.03G271100 Theobroma cacao HOM05D000078 ORTHO05D000025 6.0e-09 64.3 98 41.8
vmacro23452 Vaccinium macrocarpon HOM05D000078 ORTHO05D000025 6.0e-09 64.3 79 48.1
Dinv28493 Davidia involucrata HOM05D000078 ORTHO05D000025 7.9e-09 63.9 98 48.0
Medtr4g102670 Medicago truncatula HOM05D000078 ORTHO05D000025 7.9e-09 63.9 98 41.8
Gorai.004G208000 Gossypium raimondii HOM05D000078 ORTHO05D000025 1.0e-08 63.5 99 39.4
Sopen08g028640 Solanum pennellii HOM05D000078 ORTHO05D000025 1.0e-08 63.5 107 43.0
PGSC0003DMG400022759 Solanum tuberosum HOM05D000078 ORTHO05D000025 1.0e-08 63.5 107 43.0
MSTRG.8769 Avicennia marina HOM05D000078 ORTHO05D000025 1.3e-08 63.2 103 46.6
Actinidia03102 Actinidia chinensis HOM05D000078 ORTHO05D000025 1.8e-08 62.8 98 41.8
MSTRG.1895 Avicennia marina HOM05D000078 ORTHO05D000025 1.8e-08 62.8 108 42.6
Duzib205G0443 Durio zibethinus HOM05D000078 ORTHO05D000025 1.8e-08 62.8 97 40.2
FAN01G0476 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.8e-08 62.8 111 42.3
Gohir.D08G197200 Gossypium hirsutum HOM05D000078 ORTHO05D000025 1.8e-08 62.8 99 39.4
SGA_v2.0_scaffold286G47100 Striga asiatica HOM05D000078 ORTHO05D000025 1.8e-08 62.8 103 46.6
Actinidia05230 Actinidia chinensis HOM05D000078 ORTHO05D000025 2.3e-08 62.4 98 45.9
CsaV3_5G003240 Cucumis sativus L. HOM05D000078 ORTHO05D000025 2.3e-08 62.4 106 40.6
Gohir.A08G178700 Gossypium hirsutum HOM05D000078 ORTHO05D000025 2.3e-08 62.4 99 39.4
Sed0011627 Sechium edule HOM05D000078 ORTHO05D000025 2.3e-08 62.4 107 42.1
COL.COLO4_14254 Corchorus olitorius HOM05D000078 ORTHO05D000025 3.0e-08 62.0 52 57.7
Nn1g01346 Nelumbo nucifera HOM05D000078 ORTHO05D000025 3.0e-08 62.0 107 42.1
RcHm_v2.0_Chr1g0376651 Rosa chinensis HOM05D000078 ORTHO05D000025 3.0e-08 62.0 112 44.6
Cpa.g.sc74.86 Carica papaya HOM05D000078 ORTHO05D000025 3.9e-08 61.6 98 41.8
SalBow8G0449 Salvia bowleyana HOM05D000078 ORTHO05D000025 3.9e-08 61.6 101 42.6
THA.LOC104798737 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 5.1e-08 61.2 97 43.3
Ciclev10005869m.g Citrus clementina HOM05D000078 ORTHO05D000025 6.7e-08 60.8 98 41.8
Dinv37693 Davidia involucrata HOM05D000078 ORTHO05D000025 6.7e-08 60.8 92 46.7
MD04G1067700 Malus domestica HOM05D000078 ORTHO05D000025 6.7e-08 60.8 110 40.0
THA.LOC104811481 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 6.7e-08 60.8 100 43.0
THA.LOC109116603 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 6.7e-08 60.8 100 43.0
TWI81G1027 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 6.7e-08 60.8 107 41.1
Potri.001G110500 Populus trichocarpa HOM05D000078 ORTHO05D000025 8.7e-08 60.5 104 41.3
Migut.E01297 Erythranthe guttata HOM05D000078 ORTHO05D000025 1.1e-07 60.1 108 38.9
HanXRQChr02g0053171 Helianthus annuus HOM05D000078 ORTHO05D000025 1.1e-07 60.1 98 40.8
THA.LOC104809661 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 1.5e-07 59.7 101 42.6
Sabra03G0085500 Salix brachista HOM05D000078 ORTHO05D000025 1.9e-07 59.3 102 42.2
AL8G26360 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 2.5e-07 58.9 102 44.1
CANSAT21G2214 Cannabis sativa HOM05D000078 ORTHO05D000025 2.5e-07 58.9 124 37.1
COL.COLO4_05270 Corchorus olitorius HOM05D000078 ORTHO05D000025 2.5e-07 58.9 102 41.2
Duzib084G0616 Durio zibethinus HOM05D000078 ORTHO05D000025 2.5e-07 58.9 98 35.7
Phvul.002G154000 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 2.5e-07 58.9 100 41.0
SalBow4G3165 Salvia bowleyana HOM05D000078 ORTHO05D000025 2.5e-07 58.9 100 42.0
Carub.0008s1211 Capsella rubella HOM05D000078 ORTHO05D000025 3.3e-07 58.5 107 41.1
Potri.012G134000 Populus trichocarpa HOM05D000078 ORTHO05D000025 3.3e-07 58.5 52 59.6
Prupe.5G090800 Prunus persica HOM05D000078 ORTHO05D000025 3.3e-07 58.5 114 39.5
BcaC04g20612 Brassica carinata HOM05D000078 ORTHO05D000025 4.3e-07 58.2 105 42.9
C09p41510 Brassica napus HOM05D000078 ORTHO05D000025 4.3e-07 58.2 105 42.9
BolC9t57031H Brassica oleracea HOM05D000078 ORTHO05D000025 4.3e-07 58.2 105 42.9
Gohir.A03G015966 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.3e-07 58.2 102 39.2
Aqoxy7G00458 Aquilegia oxysepala HOM05D000078 ORTHO05D000025 5.7e-07 57.8 105 42.9
A10p09790 Brassica napus HOM05D000078 ORTHO05D000025 5.7e-07 57.8 105 42.9
BraA10t43061Z Brassica rapa HOM05D000078 ORTHO05D000025 5.7e-07 57.8 105 42.9
Haze_08951 Corylus avellana HOM05D000078 ORTHO05D000025 5.7e-07 57.8 50 56.0
Eucgr.D01924 Eucalyptus grandis HOM05D000078 ORTHO05D000025 5.7e-07 57.8 114 36.8
FAN13G1118 Fragaria x ananassa HOM05D000078 ORTHO05D000025 5.7e-07 57.8 95 42.1
Lj1P992T40 Lonicera japonica HOM05D000078 ORTHO05D000025 5.7e-07 57.8 100 43.0
Sp6g14260 Schrenkiella parvula HOM05D000078 ORTHO05D000025 5.7e-07 57.8 103 43.7
Actinidia02044 Actinidia chinensis HOM05D000078 ORTHO05D000025 7.4e-07 57.4 99 43.4
CiPaw.03G102100 Carya illinoinensis HOM05D000078 ORTHO05D000025 7.4e-07 57.4 106 39.6
FAN03G0101 Fragaria x ananassa HOM05D000078 ORTHO05D000025 7.4e-07 57.4 115 40.0
Oeu021752.1 Olea europaea HOM05D000078 ORTHO05D000025 7.4e-07 57.4 98 41.8
MELO3C005630.2 Cucumis melo HOM05D000078 ORTHO05D000025 9.6e-07 57.0 101 40.6
Potri.003G121200 Populus trichocarpa HOM05D000078 ORTHO05D000025 9.6e-07 57.0 100 42.0
A02p12020 Brassica napus HOM05D000078 ORTHO05D000025 1.3e-06 56.6 101 41.6
CARHR048580 Cardamine hirsuta HOM05D000078 ORTHO05D000025 1.6e-06 56.2 86 43.0
ClCG10G003710 Citrullus lanatus HOM05D000078 ORTHO05D000025 1.6e-06 56.2 98 42.9
FAN03G1077 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.6e-06 56.2 115 39.1
Lsat_1_v5_gn_2_133380 Lactuca sativa HOM05D000078 ORTHO05D000025 1.6e-06 56.2 101 41.6
Oeu001897.1 Olea europaea HOM05D000078 ORTHO05D000025 1.6e-06 56.2 102 43.1
vmacro22746 Vaccinium macrocarpon HOM05D000078 ORTHO05D000025 1.6e-06 56.2 51 54.9
AT5G52020 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 2.1e-06 55.8 105 41.9
Migut.A00921 Erythranthe guttata HOM05D000078 ORTHO05D000025 2.1e-06 55.8 50 56.0
Lsat_1_v5_gn_2_130880 Lactuca sativa HOM05D000078 ORTHO05D000025 2.1e-06 55.8 101 41.6
Rhsim07G0094800 Rhododendron simsii HOM05D000078 ORTHO05D000025 2.1e-06 55.8 52 53.8
Sed0010473 Sechium edule HOM05D000078 ORTHO05D000025 2.1e-06 55.8 102 42.2
Sc22g0000370 Simmondsia chinensis HOM05D000078 ORTHO05D000025 2.1e-06 55.8 103 45.6
CANSAT21G1158 Cannabis sativa HOM05D000078 ORTHO05D000025 2.8e-06 55.5 50 52.0
Cfa012102 Carpinus fangiana HOM05D000078 ORTHO05D000025 2.8e-06 55.5 50 58.0
ClCG00G000870 Citrullus lanatus HOM05D000078 ORTHO05D000025 2.8e-06 55.5 100 42.0
Cc08_g13970 Coffea canephora HOM05D000078 ORTHO05D000025 2.8e-06 55.5 113 38.9
Thhalv10014566m.g Eutrema salsugineum HOM05D000078 ORTHO05D000025 2.8e-06 55.5 106 41.5
Gohir.A11G009300 Gossypium hirsutum HOM05D000078 ORTHO05D000025 2.8e-06 55.5 100 42.0
unitig_37.g11954 Utricularia gibba HOM05D000078 ORTHO05D000025 2.8e-06 55.5 63 49.2
Ciclev10023840m.g Citrus clementina HOM05D000078 ORTHO05D000025 3.7e-06 55.1 102 39.2
Migut.F00381 Erythranthe guttata HOM05D000078 ORTHO05D000025 3.7e-06 55.1 110 40.0
Rhsim09G0196000 Rhododendron simsii HOM05D000078 ORTHO05D000025 3.7e-06 55.1 49 57.1
SGA_v2.0_scaffold196G40884 Striga asiatica HOM05D000078 ORTHO05D000025 3.7e-06 55.1 101 40.6
CAN.G981.37 Capsicum annuum HOM05D000078 ORTHO05D000025 4.8e-06 54.7 50 56.0
Ca_20244_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 4.8e-06 54.7 100 39.0
Ca_29494_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 4.8e-06 54.7 100 39.0
Glyma.10G239300 Glycine max HOM05D000078 ORTHO05D000025 4.8e-06 54.7 103 40.8
Glyma.20G155200 Glycine max HOM05D000078 ORTHO05D000025 4.8e-06 54.7 104 44.2
Oeu059061.1 Olea europaea HOM05D000078 ORTHO05D000025 4.8e-06 54.7 100 40.0
Os02g0676800 Oryza sativa ssp. japonica HOM05D000078 ORTHO05D000025 4.8e-06 54.7 55 47.3
COL.COLO4_29807 Corchorus olitorius HOM05D000078 ORTHO05D000025 6.2e-06 54.3 105 36.2
FAN04G0988 Fragaria x ananassa HOM05D000078 ORTHO05D000025 6.2e-06 54.3 106 36.8
Gorai.003G162600 Gossypium raimondii HOM05D000078 ORTHO05D000025 6.2e-06 54.3 102 37.3
PSO478G2680 Papaver somniferum HOM05D000078 ORTHO05D000025 6.2e-06 54.3 58 48.3
PSO782G0405 Papaver somniferum HOM05D000078 ORTHO05D000025 6.2e-06 54.3 58 48.3
QL12p017165 Quercus lobata HOM05D000078 ORTHO05D000025 6.2e-06 54.3 102 42.2
RcHm_v2.0_Chr1g0376641 Rosa chinensis HOM05D000078 ORTHO05D000025 6.2e-06 54.3 98 39.8
SalBow4G1632 Salvia bowleyana HOM05D000078 ORTHO05D000025 6.2e-06 54.3 101 40.6
DCAR_018163 Daucus carota HOM05D000078 ORTHO05D000025 8.2e-06 53.9 103 44.7
Gohir.D03G154500 Gossypium hirsutum HOM05D000078 ORTHO05D000025 8.2e-06 53.9 102 37.3


User provided reference genes

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