Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 3.0e-221 771.5 393 100.0
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 9.6e-151 537.3 355 79.7
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 3.4e-148 528.9 404 71.0
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 3.8e-147 525.4 402 70.6
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 5.1e-144 515.0 405 69.1
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 3.0e-128 462.6 363 68.9
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 8.5e-115 417.9 361 60.7
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 8.8e-104 381.3 369 55.0
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 2.6e-103 379.8 394 52.5
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 3.3e-103 379.4 380 54.2
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.2e-102 376.7 365 55.3
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 4.8e-102 375.6 373 54.4
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 3.1e-101 372.9 370 54.3
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 2.9e-99 366.3 352 55.1
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 6.5e-99 365.2 348 54.6
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 8.5e-99 364.8 384 51.3
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.1e-98 364.4 323 57.9
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 1.9e-98 363.6 371 52.3
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 3.2e-98 362.8 383 51.2
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 7.2e-98 361.7 398 51.5
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 1.2e-97 360.9 359 53.8
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 1.2e-97 360.9 349 54.2
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 2.1e-97 360.1 351 53.8
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 2.1e-97 360.1 383 52.5
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 3.6e-97 359.4 360 53.3
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.6e-97 359.4 362 53.6
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 4.7e-97 359.0 299 63.9
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 4.7e-97 359.0 360 53.6
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 6.1e-97 358.6 342 55.8
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 7.9e-97 358.2 350 54.0
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 1.4e-96 357.5 350 54.9
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 1.4e-96 357.5 400 49.0
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 2.3e-96 356.7 359 53.2
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 5.2e-96 355.5 353 52.1
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 5.2e-96 355.5 351 55.0
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 8.8e-96 354.8 360 53.6
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.1e-95 354.4 328 55.2
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.1e-95 354.4 357 54.6
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 1.5e-95 354.0 347 53.6
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.0e-95 353.6 351 51.9
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.0e-95 353.6 384 50.8
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 2.6e-95 353.2 350 54.0
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 2.6e-95 353.2 395 51.1
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 3.3e-95 352.8 350 54.0
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 3.3e-95 352.8 360 52.5
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 3.3e-95 352.8 312 57.7
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 3.3e-95 352.8 397 49.1
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 4.4e-95 352.4 350 53.7
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 7.4e-95 351.7 361 52.4
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 9.7e-95 351.3 353 53.0
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 1.7e-94 350.5 350 53.4
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 1.7e-94 350.5 350 53.7
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 1.7e-94 350.5 320 55.9
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 2.2e-94 350.1 352 52.0
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 2.8e-94 349.7 349 54.2
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 8.2e-94 348.2 384 51.6
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 8.2e-94 348.2 362 51.9
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 8.2e-94 348.2 362 52.8
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 8.2e-94 348.2 351 52.7
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.1e-93 347.8 359 51.3
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 1.1e-93 347.8 361 52.1
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.4e-93 347.4 354 52.8
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.4e-93 347.4 354 52.3
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 1.4e-93 347.4 354 52.3
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.4e-93 346.7 325 55.1
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 3.1e-93 346.3 360 52.5
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 4.1e-93 345.9 363 51.8
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 7.0e-93 345.1 311 57.9
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.2e-92 344.4 360 51.7
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 3.5e-92 342.8 351 51.9
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 4.5e-92 342.4 356 50.6
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 1.0e-91 341.3 348 52.3
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 1.3e-91 340.9 348 52.3
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 1.7e-91 340.5 360 50.6
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 1.7e-91 340.5 385 49.4
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 8.5e-91 338.2 385 47.8
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 8.5e-91 338.2 323 55.4
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.1e-90 337.8 351 51.3
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.9e-90 337.0 311 55.9
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 5.5e-90 335.5 386 49.7
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 1.2e-89 334.3 351 49.6
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 4.7e-89 332.4 258 64.0
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.8e-88 330.5 368 50.8
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 1.8e-88 330.5 367 49.9
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.8e-88 330.5 352 52.0
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 3.0e-88 329.7 284 58.5
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 1.5e-87 327.4 401 47.4
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.3e-87 326.2 362 50.6
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 7.5e-87 325.1 337 51.3
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 7.5e-87 325.1 401 46.9
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 9.7e-87 324.7 356 49.4
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 1.7e-86 323.9 314 54.1
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 3.7e-86 322.8 311 53.1
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.4e-85 320.9 282 54.6
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 9.1e-85 318.2 366 47.5
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 1.3e-83 314.3 370 47.0
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.2e-83 313.5 268 59.3
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 2.2e-83 313.5 356 48.3
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 3.8e-83 312.8 356 49.2
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 5.0e-83 312.4 262 61.1
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 5.0e-83 312.4 262 61.1
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 5.0e-83 312.4 406 45.1
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.1e-82 311.2 290 56.6
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 1.1e-82 311.2 322 51.6
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 2.5e-82 310.1 254 61.4
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 9.4e-82 308.1 254 59.4
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 3.6e-81 306.2 246 60.6
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 1.4e-80 304.3 262 58.8
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 9.8e-79 298.1 348 47.1
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 6.3e-78 295.4 367 47.7
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 1.8e-77 293.9 359 46.0
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 1.6e-76 290.8 429 41.5
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.0e-75 288.1 333 46.2
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 1.7e-75 287.3 345 46.4
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 8.6e-75 285.0 252 54.8
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 7.2e-74 282.0 267 52.4
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 8.0e-73 278.5 349 43.6
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 1.6e-68 264.2 360 41.7
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.1e-66 258.1 328 46.0
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 4.3e-66 256.1 190 65.8
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 4.9e-62 242.7 350 38.3
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.9e-58 230.7 207 59.4
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 5.2e-56 222.6 274 43.1
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.9e-54 216.9 233 49.8
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 7.3e-50 202.2 317 35.0
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 1.2e-49 201.4 228 49.1
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.1e-48 196.8 149 62.4
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.4e-45 188.0 179 54.2
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 4.6e-44 183.0 137 62.8
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.9e-43 179.9 152 56.6
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 1.1e-42 178.3 345 36.8
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 4.7e-41 172.9 196 50.0
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 4.0e-40 169.9 253 38.3
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 2.6e-39 167.2 282 34.0
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 3.5e-36 156.8 228 40.4
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 4.6e-36 156.4 228 40.4
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 3.3e-34 150.2 281 35.2
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.7e-30 137.9 158 49.4
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 4.9e-30 136.3 152 45.4
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 7.1e-29 132.5 305 32.8
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 9.3e-21 105.5 279 29.4
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 1.0e-19 102.1 160 39.4
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 5.6e-18 96.3 112 48.2
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 6.2e-17 92.8 160 38.1
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 3.2e-13 80.5 121 40.5
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 7.1e-13 79.3 92 46.7
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 7.1e-13 79.3 92 46.7
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.1e-12 77.8 120 42.5
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 9.0e-08 62.4 56 55.4


User provided reference genes

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