Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000191g0160 Nicotiana tabacum HOM05D000812 ORTHO05D000672 4.4e-65 251.1 126 100.0
Peaxi162Scf00048g00193 Petunia axillaris HOM05D000812 ORTHO05D000672 3.4e-17 92.0 99 49.5
Nitab4.5_0000700g0050 Nicotiana tabacum HOM05D000812 ORTHO05D000672 1.1e-15 87.0 95 49.5
Nitab4.5_0000059g0570 Nicotiana tabacum HOM05D000812 ORTHO05D000672 5.4e-15 84.7 98 48.0
Actinidia19321 Actinidia chinensis HOM05D000812 ORTHO05D000672 1.5e-12 76.6 106 41.5
Nitab4.5_0003546g0080 Nicotiana tabacum HOM05D000007 ORTHO05D000017 4.3e-12 75.1 115 47.0
MSTRG.9676 Avicennia marina HOM05D000812 ORTHO05D000672 2.1e-11 72.8 90 41.1
Dinv02892 Davidia involucrata HOM05D000812 ORTHO05D000672 2.8e-11 72.4 89 42.7
MSTRG.4372 Avicennia marina HOM05D000812 ORTHO05D000672 4.8e-11 71.6 90 41.1
Actinidia33069 Actinidia chinensis HOM05D000812 ORTHO05D000672 6.2e-11 71.2 89 39.3
Nitab4.5_0007719g0060 Nicotiana tabacum HOM05D000812 ORTHO05D000672 8.1e-11 70.9 90 40.0
Peaxi162Scf00017g03031 Petunia axillaris HOM05D000812 ORTHO05D000672 8.1e-11 70.9 90 41.1
Nitab4.5_0000646g0020 Nicotiana tabacum HOM05D000812 ORTHO05D000672 1.1e-10 70.5 90 40.0
Cc04_g14100 Coffea canephora HOM05D000812 ORTHO05D000672 1.4e-10 70.1 90 40.0
Dinv20653 Davidia involucrata HOM05D000812 ORTHO05D000672 1.4e-10 70.1 90 40.0
Nitab4.5_0001724g0060 Nicotiana tabacum HOM05D000812 ORTHO05D000672 1.4e-10 70.1 97 38.1
Rhsim12G0164600 Rhododendron simsii HOM05D000812 ORTHO05D000672 1.4e-10 70.1 97 37.1
Actinidia19097 Actinidia chinensis HOM05D000812 ORTHO05D000672 3.1e-10 68.9 95 36.8
Lj5A124T71 Lonicera japonica HOM05D000812 ORTHO05D000672 4.0e-10 68.6 91 39.6
CSS0017926 Camellia sinensis var. sinensis HOM05D000812 ORTHO05D000672 5.3e-10 68.2 90 36.7
CSS0018379 Camellia sinensis var. sinensis HOM05D000812 ORTHO05D000672 5.3e-10 68.2 83 41.0
Oeu035994.2 Olea europaea HOM05D000812 ORTHO05D000672 6.9e-10 67.8 90 41.1
PGSC0003DMG400024600 Solanum tuberosum HOM05D000812 ORTHO05D000672 9.0e-10 67.4 90 40.0
Aqoxy3G01040 Aquilegia oxysepala HOM05D000812 ORTHO05D000672 1.2e-09 67.0 89 40.4
Cfa019133 Carpinus fangiana HOM05D000812 ORTHO05D000672 1.2e-09 67.0 91 38.5
Rhsim08G0172100 Rhododendron simsii HOM05D000812 ORTHO05D000672 1.2e-09 67.0 90 38.9
Cpa.g.sc76.55 Carica papaya HOM05D000812 ORTHO05D000672 1.5e-09 66.6 90 36.7
Sopen03g033460 Solanum pennellii HOM05D000812 ORTHO05D000672 1.5e-09 66.6 90 38.9
vmacro19386 Vaccinium macrocarpon HOM05D000812 ORTHO05D000672 1.5e-09 66.6 90 36.7
CAN.G781.8 Capsicum annuum HOM05D000812 ORTHO05D000672 2.0e-09 66.2 90 38.9
Haze_07472 Corylus avellana HOM05D000812 ORTHO05D000672 2.0e-09 66.2 91 38.5
Manes.14G065700 Manihot esculenta HOM05D000812 ORTHO05D000672 2.0e-09 66.2 90 36.7
Solyc03g114360.4 Solanum lycopersicum HOM05D000812 ORTHO05D000672 2.6e-09 65.9 90 40.0
Lalb_Chr11g0071321 Lupinus albus HOM05D000812 ORTHO05D000672 3.4e-09 65.5 88 39.8
Oeu057350.1 Olea europaea HOM05D000812 ORTHO05D000672 3.4e-09 65.5 90 40.0
Eucgr.B00305 Eucalyptus grandis HOM05D000812 ORTHO05D000672 4.5e-09 65.1 90 40.0
Oeu016384.1 Olea europaea HOM05D000812 ORTHO05D000672 4.5e-09 65.1 92 35.9
Eucgr.B00313 Eucalyptus grandis HOM05D000812 ORTHO05D000672 5.8e-09 64.7 89 38.2
Peaxi162Scf00255g01213 Petunia axillaris HOM05D000812 ORTHO05D000672 5.8e-09 64.7 90 35.6
Sp5g14200 Schrenkiella parvula HOM05D000812 ORTHO05D000672 5.8e-09 64.7 124 33.9
SGA_v2.0_scaffold7G04134 Striga asiatica HOM05D000812 ORTHO05D000672 5.8e-09 64.7 83 39.8
Eucgr.B00314 Eucalyptus grandis HOM05D000812 ORTHO05D000672 7.6e-09 64.3 89 37.1
Potri.012G081100 Populus trichocarpa HOM05D000812 ORTHO05D000672 7.6e-09 64.3 90 37.8
MSTRG.11452 Avicennia marina HOM05D000812 ORTHO05D000672 9.9e-09 63.9 91 35.2
BcaC02g07707 Brassica carinata HOM05D000812 ORTHO05D000672 9.9e-09 63.9 84 35.7
Nn3g16865 Nelumbo nucifera HOM05D000812 ORTHO05D000672 9.9e-09 63.9 106 33.0
SalBow2G2821 Salvia bowleyana HOM05D000812 ORTHO05D000672 9.9e-09 63.9 95 36.8
BolC4t27920H Brassica oleracea HOM05D000812 ORTHO05D000672 1.3e-08 63.5 84 35.7
Migut.D01931 Erythranthe guttata HOM05D000812 ORTHO05D000672 1.3e-08 63.5 90 41.1
GSVIVG01007754001 Vitis vinifera HOM05D000812 ORTHO05D000672 1.3e-08 63.5 89 38.2
FAN08G1864 Fragaria x ananassa HOM05D000812 ORTHO05D000672 1.7e-08 63.2 93 36.6
Sabra12G0058000 Salix brachista HOM05D000812 ORTHO05D000672 1.7e-08 63.2 90 37.8
TAR622G1404 Trochodendron aralioides HOM05D000812 ORTHO05D000672 1.7e-08 63.2 97 38.1
A04p26940 Brassica napus HOM05D000812 ORTHO05D000672 2.2e-08 62.8 84 35.7
C04p64330 Brassica napus HOM05D000812 ORTHO05D000672 2.2e-08 62.8 84 35.7
FAN04G1163 Fragaria x ananassa HOM05D000812 ORTHO05D000672 2.2e-08 62.8 93 36.6
MBI16_g27099_MAGBIO Magnolia biondii HOM05D000812 ORTHO05D000672 2.2e-08 62.8 99 37.4
Nitab4.5_0000025g0590 Nicotiana tabacum HOM05D000812 ORTHO05D000672 2.2e-08 62.8 89 39.3
PGR083G1086 Punica granatum HOM05D000812 ORTHO05D000672 2.2e-08 62.8 90 37.8
Dinv24842 Davidia involucrata HOM05D000812 ORTHO05D002628 2.9e-08 62.4 97 36.1
FvH4_5g05320 Fragaria vesca HOM05D000812 ORTHO05D000672 2.9e-08 62.4 93 36.6
FAN13G3144 Fragaria x ananassa HOM05D000812 ORTHO05D000672 2.9e-08 62.4 90 36.7
FAN18G0809 Fragaria x ananassa HOM05D000812 ORTHO05D000672 2.9e-08 62.4 93 36.6
FAN18G1988 Fragaria x ananassa HOM05D000812 ORTHO05D000672 2.9e-08 62.4 93 36.6
Gohir.A12G274100 Gossypium hirsutum HOM05D000812 ORTHO05D000672 2.9e-08 62.4 90 37.8
TAR374G0978 Trochodendron aralioides HOM05D000812 ORTHO05D000672 2.9e-08 62.4 98 35.7
TAR381G0208 Trochodendron aralioides HOM05D000812 ORTHO05D000672 3.8e-08 62.0 76 42.1
EL10Ac5g10746 Beta vulgaris HOM05D000812 ORTHO05D000672 4.9e-08 61.6 92 34.8
COL.COLO4_30038 Corchorus olitorius HOM05D000812 ORTHO05D000672 4.9e-08 61.6 90 40.0
Nitab4.5_0000203g0240 Nicotiana tabacum HOM05D000812 ORTHO05D000672 4.9e-08 61.6 103 33.0
Gohir.D12G274800 Gossypium hirsutum HOM05D000812 ORTHO05D000672 6.4e-08 61.2 90 36.7
Gorai.008G295300 Gossypium raimondii HOM05D000812 ORTHO05D000672 6.4e-08 61.2 90 36.7
Peaxi162Scf00710g00414 Petunia axillaris HOM05D000812 ORTHO05D000672 6.4e-08 61.2 109 33.9
Sabra15G0101600 Salix brachista HOM05D000812 ORTHO05D000672 6.4e-08 61.2 89 38.2
Atru.chr9.2478 Acer truncatum HOM05D000812 ORTHO05D000672 8.4e-08 60.8 89 37.1
Actinidia01703 Actinidia chinensis HOM05D000812 ORTHO05D000672 8.4e-08 60.8 94 34.0
BraA04t18193Z Brassica rapa HOM05D000812 ORTHO05D000672 8.4e-08 60.8 84 34.5
RcHm_v2.0_Chr7g0193541 Rosa chinensis HOM05D000812 ORTHO05D000672 8.4e-08 60.8 90 36.7
BcaB07g29844 Brassica carinata HOM05D000812 ORTHO05D000672 1.1e-07 60.5 104 36.5
BcaC01g02483 Brassica carinata HOM05D000812 ORTHO05D000672 1.1e-07 60.5 83 39.8
C03p64310 Brassica napus HOM05D000812 ORTHO05D000672 1.1e-07 60.5 83 39.8
BolC3t18685H Brassica oleracea HOM05D000812 ORTHO05D000672 1.1e-07 60.5 83 39.8
CSS0018742 Camellia sinensis var. sinensis HOM05D000812 ORTHO05D000672 1.1e-07 60.5 97 35.1
QL10p011650 Quercus lobata HOM05D000812 ORTHO05D000672 1.1e-07 60.5 90 33.3
TPR.G6081 Trifolium pratense HOM05D000812 ORTHO05D000672 1.1e-07 60.5 89 37.1
Duzib205G2052 Durio zibethinus HOM05D000812 ORTHO05D000672 1.4e-07 60.1 90 37.8
ECA232G4399 Erigeron canadensis HOM05D000812 ORTHO05D000672 1.4e-07 60.1 89 36.0
MD14G1180300 Malus domestica HOM05D000812 ORTHO05D000672 1.4e-07 60.1 90 34.4
Potri.015G076500 Populus trichocarpa HOM05D000812 ORTHO05D000672 1.4e-07 60.1 89 38.2
Prupe.5G173700 Prunus persica HOM05D000812 ORTHO05D000672 1.4e-07 60.1 90 36.7
vmacro16609 Vaccinium macrocarpon HOM05D000812 ORTHO05D000672 1.4e-07 60.1 90 37.8
AL8G39410 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 1.9e-07 59.7 100 37.0
BcaB06g28846 Brassica carinata HOM05D000812 ORTHO05D000672 1.9e-07 59.7 77 37.7
Carub.0005s1385 Capsella rubella HOM05D000812 ORTHO05D000672 1.9e-07 59.7 122 31.1
CARHR156400 Cardamine hirsuta HOM05D000812 ORTHO05D000672 1.9e-07 59.7 84 36.9
MD06G1173800 Malus domestica HOM05D000812 ORTHO05D000672 1.9e-07 59.7 90 34.4
SGA_v2.0_scaffold114G31834 Striga asiatica HOM05D000812 ORTHO05D000672 1.9e-07 59.7 86 33.7
TAR371G0407 Trochodendron aralioides HOM05D000812 ORTHO05D000672 1.9e-07 59.7 97 36.1
A06p29220 Brassica napus HOM05D000812 ORTHO05D000672 2.4e-07 59.3 121 33.9
ClCG01G013140 Citrullus lanatus HOM05D000812 ORTHO05D000672 2.4e-07 59.3 90 35.6
AT3G47720 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 3.2e-07 58.9 124 30.6
BcaC03g18157 Brassica carinata HOM05D000812 ORTHO05D000672 3.2e-07 58.9 124 33.1
BcaC03g18162 Brassica carinata HOM05D000812 ORTHO05D000672 3.2e-07 58.9 124 33.1
C02p62270 Brassica napus HOM05D000812 ORTHO05D000672 3.2e-07 58.9 124 33.1
BolC2t12284H Brassica oleracea HOM05D000812 ORTHO05D000672 3.2e-07 58.9 124 33.1
Carub.0008s2319 Capsella rubella HOM05D000812 ORTHO05D000672 4.2e-07 58.5 107 34.6
Psat4g058080 Pisum sativum HOM05D000812 ORTHO05D000672 4.2e-07 58.5 91 35.2
THA.LOC104819437 Tarenaya hassleriana HOM05D000812 ORTHO05D000672 4.2e-07 58.5 92 32.6
Thecc.03G012700 Theobroma cacao HOM05D000812 ORTHO05D000672 4.2e-07 58.5 90 37.8
TAR629G2674 Trochodendron aralioides HOM05D000812 ORTHO05D000672 4.2e-07 58.5 112 33.9
AT5G62520 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 5.5e-07 58.2 100 36.0
Ciclev10020868m.g Citrus clementina HOM05D000812 ORTHO05D000672 5.5e-07 58.2 90 33.3
CsaV3_1G008470 Cucumis sativus L. HOM05D000812 ORTHO05D000672 7.1e-07 57.8 85 35.3
DCAR_031317 Daucus carota HOM05D000812 ORTHO05D000672 7.1e-07 57.8 93 34.4
AL5G26990 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 9.3e-07 57.4 98 33.7
A05p10220 Brassica napus HOM05D000812 ORTHO05D000672 1.2e-06 57.0 49 46.9
BraA06t25878Z Brassica rapa HOM05D000812 ORTHO05D000672 1.2e-06 57.0 121 33.1
CiPaw.12G026600 Carya illinoinensis HOM05D000812 ORTHO05D000672 1.2e-06 57.0 86 33.7
Thhalv10004619m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 1.2e-06 57.0 122 32.8
Oeu056405.1 Olea europaea HOM05D000812 ORTHO05D000672 1.2e-06 57.0 98 29.6
RcHm_v2.0_Chr5g0030861 Rosa chinensis HOM05D000812 ORTHO05D000672 1.2e-06 57.0 89 33.7
Sp2g25690 Schrenkiella parvula HOM05D000812 ORTHO05D000672 1.2e-06 57.0 122 33.6
Hund09338 Selenicereus undatus HOM05D000812 ORTHO05D000672 1.2e-06 57.0 89 33.7
unitig_0.g17 Utricularia gibba HOM05D000812 ORTHO05D000672 1.2e-06 57.0 87 34.5
unitig_0.g797 Utricularia gibba HOM05D000812 ORTHO05D000672 1.2e-06 57.0 94 37.2
AT2G35510 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 1.6e-06 56.6 80 35.0
BcaB02g09654 Brassica carinata HOM05D000812 ORTHO05D000672 1.6e-06 56.6 123 31.7
CDE02G0760 Ceratophyllum demersum HOM05D000812 ORTHO05D000672 1.6e-06 56.6 85 36.5
CDE09G1170 Ceratophyllum demersum HOM05D000812 ORTHO05D000672 1.6e-06 56.6 91 34.1
Ca_21919_v3 Cicer arietinum L. HOM05D000812 ORTHO05D000672 1.6e-06 56.6 90 33.3
DCAR_026135 Daucus carota HOM05D000812 ORTHO05D000672 1.6e-06 56.6 91 33.0
AL4G31560 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 2.1e-06 56.2 80 31.2
Thhalv10011103m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 2.1e-06 56.2 124 30.6
Sed0012184 Sechium edule HOM05D000812 ORTHO05D000672 2.1e-06 56.2 90 34.4
THA.LOC104814416 Tarenaya hassleriana HOM05D000812 ORTHO05D000672 2.1e-06 56.2 84 33.3
A02p42380 Brassica napus HOM05D000812 ORTHO05D000672 2.7e-06 55.8 124 32.3
MELO3C002263.2 Cucumis melo HOM05D000812 ORTHO05D000672 2.7e-06 55.8 85 34.1
BraA02t09169Z Brassica rapa HOM05D000812 ORTHO05D000672 3.5e-06 55.5 100 35.0
CARHR276300 Cardamine hirsuta HOM05D000812 ORTHO05D000672 3.5e-06 55.5 86 36.0
CiPaw.11G026200 Carya illinoinensis HOM05D000812 ORTHO05D000672 3.5e-06 55.5 44 52.3
Lsat_1_v5_gn_4_75180 Lactuca sativa HOM05D000812 ORTHO05D000672 3.5e-06 55.5 92 32.6
Lj4g0011605 Lotus japonicus HOM05D000812 ORTHO05D000672 3.5e-06 55.5 91 33.0
QL08p058949 Quercus lobata HOM05D000812 ORTHO05D000672 3.5e-06 55.5 97 34.0
TAR037G0002 Trochodendron aralioides HOM05D000812 ORTHO05D000672 4.6e-06 55.1 98 30.6
TAR629G1538 Trochodendron aralioides HOM05D000812 ORTHO05D000672 4.6e-06 55.1 89 31.5
Thhalv10016444m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 6.0e-06 54.7 44 50.0
HanXRQChr09g0272181 Helianthus annuus HOM05D000812 ORTHO05D000672 6.0e-06 54.7 99 33.3
Phvul.003G200500 Phaseolus vulgaris HOM05D000812 ORTHO05D000672 6.0e-06 54.7 88 33.0
Psat5g114720 Pisum sativum HOM05D000812 ORTHO05D000672 6.0e-06 54.7 89 36.0
Hund02743 Selenicereus undatus HOM05D000812 ORTHO05D000672 6.0e-06 54.7 94 33.0
vmacro19387 Vaccinium macrocarpon HOM05D000812 ORTHO05D000672 6.0e-06 54.7 74 39.2
VMungo1215G1374 Vigna mungo HOM05D000812 ORTHO05D000672 6.0e-06 54.7 88 33.0
Nitab4.5_0001483g0030 Nicotiana tabacum HOM05D000812 ORTHO05D000672 7.9e-06 54.3 98 34.7
PGSC0003DMG400013476 Solanum tuberosum HOM05D000812 ORTHO05D000672 7.9e-06 54.3 110 30.0


User provided reference genes

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