Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000172g0980 Nicotiana tabacum HOM05D001325 ORTHO05D005438 1.2e-117 426.4 205 100.0
Nitab4.5_0000172g1710 Nicotiana tabacum HOM05D001325 ORTHO05D005438 4.5e-59 231.9 230 59.1
Peaxi162Scf00625g00027 Petunia axillaris HOM05D000743 ORTHO05D000580 5.1e-47 191.8 192 56.2
Peaxi162Scf00588g00111 Petunia axillaris HOM05D001325 ORTHO05D005438 1.2e-43 180.6 217 49.3
MSTRG.3526 Avicennia marina HOM05D001325 ORTHO05D005438 1.0e-42 177.6 91 91.2
Solyc00g500261.1 Solanum lycopersicum HOM05D001325 ORTHO05D005438 1.0e-42 177.6 91 91.2
Solyc00g500361.1 Solanum lycopersicum HOM05D001325 ORTHO05D011137 1.0e-42 177.6 91 91.2
Solyc00g500115.1 Solanum lycopersicum HOM05D001325 ORTHO05D005438 1.3e-42 177.2 91 90.1
Nitab4.5_0001796g0230 Nicotiana tabacum HOM05D001325 ORTHO05D005438 3.8e-42 175.6 187 55.1
SalBow1G5537 Salvia bowleyana HOM05D001325 ORTHO05D005438 3.8e-42 175.6 91 90.1
SalBow1G6489 Salvia bowleyana HOM05D001325 ORTHO05D005438 3.8e-42 175.6 91 90.1
SalBow1G6915 Salvia bowleyana HOM05D001325 ORTHO05D005438 3.8e-42 175.6 91 90.1
Solyc00g500225.1 Solanum lycopersicum HOM05D001325 ORTHO05D005438 3.8e-42 175.6 86 95.3
PGR028G0020 Punica granatum HOM05D001325 ORTHO05D005438 5.0e-42 175.3 91 90.1
Lsat_1_v5_gn_1_24001 Lactuca sativa HOM05D001325 ORTHO05D001540 6.5e-42 174.9 91 90.1
Lj2A1221T109 Lonicera japonica HOM05D001325 ORTHO05D005438 1.4e-41 173.7 91 90.1
LjContig00315g0018892 Lotus japonicus HOM05D001325 ORTHO05D005438 1.9e-41 173.3 86 94.2
Lalb_Chr00c24g0406971 Lupinus albus HOM05D001325 ORTHO05D005438 1.9e-41 173.3 91 89.0
Lalb_Chr17g0337401 Lupinus albus HOM05D001325 ORTHO05D005438 1.9e-41 173.3 91 89.0
arahy.Tifrunner.gnm1.ann1.2YD7KU Arachis hypogaea HOM05D001325 ORTHO05D001540 4.2e-41 172.2 91 89.0
arahy.Tifrunner.gnm1.ann1.KX3NGM Arachis hypogaea HOM05D001325 ORTHO05D001540 4.2e-41 172.2 91 89.0
arahy.Tifrunner.gnm1.ann1.Q8C5RR Arachis hypogaea HOM05D001325 ORTHO05D005438 4.2e-41 172.2 91 89.0
arahy.Tifrunner.gnm1.ann1.TPY4ZQ Arachis hypogaea HOM05D001325 ORTHO05D001540 4.2e-41 172.2 91 89.0
arahy.Tifrunner.gnm1.ann1.XXM48B Arachis hypogaea HOM05D001325 ORTHO05D001540 4.2e-41 172.2 91 89.0
Nitab4.5_0001788g0340 Nicotiana tabacum HOM05D001325 ORTHO05D005438 4.2e-41 172.2 86 93.0
DCAR_032435 Daucus carota HOM05D001325 ORTHO05D005438 2.1e-40 169.9 91 87.9
HanXRQChr00c0055g0571461 Helianthus annuus HOM05D001325 ORTHO05D001540 2.1e-40 169.9 91 87.9
HanXRQMTg0579641 Helianthus annuus HOM05D001325 ORTHO05D001540 2.1e-40 169.9 91 87.9
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 2.7e-40 169.5 91 87.9
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 2.7e-40 169.5 91 87.9
CAN.G266.7 Capsicum annuum HOM05D001325 ORTHO05D005438 1.0e-39 167.5 94 86.2
RcHm_v2.0_MTg0498381 Rosa chinensis HOM05D001325 ORTHO05D005438 1.4e-39 167.2 91 87.9
CDE02G2710 Ceratophyllum demersum HOM05D001325 ORTHO05D001540 1.8e-39 166.8 91 86.8
Sc04g0005510 Simmondsia chinensis HOM05D001325 ORTHO05D005438 2.3e-39 166.4 91 86.8
Medtr0082s0040 Medicago truncatula HOM05D001325 ORTHO05D001540 6.7e-39 164.9 86 89.5
CsaV3_UNG208560 Cucumis sativus L. HOM05D001325 ORTHO05D005438 1.5e-38 163.7 91 86.8
HanXRQChr15g0488691 Helianthus annuus HOM05D001325 ORTHO05D005438 2.0e-38 163.3 91 84.6
SHI38566 Sapria himalayana HOM05D001325 ORTHO05D001540 5.7e-38 161.8 91 84.6
SHI39812 Sapria himalayana HOM05D001325 ORTHO05D001540 5.7e-38 161.8 91 84.6
SHI49994 Sapria himalayana HOM05D001325 ORTHO05D001540 5.7e-38 161.8 91 84.6
SHI50801 Sapria himalayana HOM05D001325 ORTHO05D001540 5.7e-38 161.8 91 84.6
SHI51105 Sapria himalayana HOM05D001325 ORTHO05D005438 5.7e-38 161.8 91 84.6
SHI51700 Sapria himalayana HOM05D001325 ORTHO05D001540 5.7e-38 161.8 91 84.6
SHI53372 Sapria himalayana HOM05D001325 ORTHO05D001540 5.7e-38 161.8 91 84.6
Nitab4.5_0005853g0080 Nicotiana tabacum HOM05D001325 ORTHO05D001540 7.4e-38 161.4 85 88.2
Lalb_Chr03g0038871 Lupinus albus HOM05D001325 ORTHO05D005438 1.3e-37 160.6 91 84.6
SHI53190 Sapria himalayana HOM05D001325 ORTHO05D001540 1.3e-37 160.6 86 88.4
SHI54219 Sapria himalayana HOM05D001325 ORTHO05D001540 1.3e-37 160.6 91 83.5
AL3G44430 Arabidopsis lyrata HOM05D001325 ORTHO05D005438 1.7e-37 160.2 91 83.5
AT2G07751 Arabidopsis thaliana HOM05D001325 ORTHO05D005438 1.7e-37 160.2 91 83.5
ATMG00990 Arabidopsis thaliana HOM05D001325 ORTHO05D005438 1.7e-37 160.2 91 83.5
BolSC28t60356H Brassica oleracea HOM05D001325 ORTHO05D005438 1.7e-37 160.2 91 83.5
BraSC48t46255Z Brassica rapa HOM05D001325 ORTHO05D005438 1.7e-37 160.2 91 83.5
BraSC77t46664Z Brassica rapa HOM05D001325 ORTHO05D005438 1.7e-37 160.2 91 83.5
CARHR283250 Cardamine hirsuta HOM05D001325 ORTHO05D005438 1.7e-37 160.2 91 83.5
SHI46090 Sapria himalayana HOM05D001325 ORTHO05D001540 1.7e-37 160.2 91 83.5
SHI54160 Sapria himalayana HOM05D001325 ORTHO05D001540 1.7e-37 160.2 91 83.5
CANSAT25G2613 Cannabis sativa HOM05D001325 ORTHO05D005438 2.8e-37 159.5 91 83.5
SHI36383 Sapria himalayana HOM05D001325 ORTHO05D001540 2.8e-37 159.5 91 83.5
SHI36966 Sapria himalayana HOM05D001325 ORTHO05D005438 2.8e-37 159.5 112 73.2
SHI36581 Sapria himalayana HOM05D001325 ORTHO05D001540 4.8e-37 158.7 91 82.4
SHI36771 Sapria himalayana HOM05D001325 ORTHO05D001540 8.2e-37 157.9 91 83.5
SHI36782 Sapria himalayana HOM05D001325 ORTHO05D001540 8.2e-37 157.9 91 83.5
Ah.10g028160 Amaranthus hybridus HOM05D001325 ORTHO05D005438 1.8e-36 156.8 146 62.3
SHI33930 Sapria himalayana HOM05D001325 ORTHO05D001540 4.1e-36 155.6 91 80.2
Cpa.g.sc87.115 Carica papaya HOM05D001325 ORTHO05D005438 7.0e-36 154.8 86 87.2
SHI27348 Sapria himalayana HOM05D001325 ORTHO05D005438 1.2e-35 154.1 114 69.3
SHI50625 Sapria himalayana HOM05D001325 ORTHO05D001540 1.2e-35 154.1 85 84.7
SHI42503 Sapria himalayana HOM05D001325 ORTHO05D001540 2.6e-35 152.9 91 80.2
MBI10_g41320_MAGBIO Magnolia biondii HOM05D001325 ORTHO05D005438 3.5e-35 152.5 79 89.9
SHI35334 Sapria himalayana HOM05D001325 ORTHO05D001540 4.5e-35 152.1 114 68.4
SHI35326 Sapria himalayana HOM05D001325 ORTHO05D001540 5.9e-35 151.8 91 79.1
Nitab4.5_0000844g0170 Nicotiana tabacum HOM05D001325 ORTHO05D005438 7.7e-35 151.4 85 82.4
SHI43970 Sapria himalayana HOM05D001325 ORTHO05D001540 7.7e-35 151.4 91 80.2
SHI49748 Sapria himalayana HOM05D001325 ORTHO05D001540 1.7e-34 150.2 91 80.2
SHI44576 Sapria himalayana HOM05D001325 ORTHO05D001540 3.8e-34 149.1 91 78.0
SHI35190 Sapria himalayana HOM05D001325 ORTHO05D001540 5.0e-34 148.7 91 78.0
SHI49663 Sapria himalayana HOM05D001325 ORTHO05D001540 8.5e-34 147.9 91 79.1
SHI54131 Sapria himalayana HOM05D001325 ORTHO05D001540 8.5e-34 147.9 85 82.4
SHI35457 Sapria himalayana HOM05D001325 ORTHO05D005438 1.5e-33 147.1 91 76.9
SHI39777 Sapria himalayana HOM05D001325 ORTHO05D001540 1.5e-33 147.1 91 78.0
SHI36629 Sapria himalayana HOM05D001325 ORTHO05D001540 3.2e-33 146.0 85 82.4
SHI46908 Sapria himalayana HOM05D001325 ORTHO05D001540 7.2e-33 144.8 91 76.9
SHI51228 Sapria himalayana HOM05D001325 ORTHO05D001540 7.2e-33 144.8 91 76.9
SHI51612 Sapria himalayana HOM05D001325 ORTHO05D001540 9.4e-33 144.4 91 76.9
Potri.007G062001 Populus trichocarpa HOM05D001325 ORTHO05D005438 2.1e-32 143.3 91 79.1
SHI34630 Sapria himalayana HOM05D001325 ORTHO05D001540 2.7e-32 142.9 91 78.0
SHI51658 Sapria himalayana HOM05D001325 ORTHO05D001540 5.7e-30 135.2 85 76.5
SHI40932 Sapria himalayana HOM05D001325 ORTHO05D005438 2.8e-29 132.9 82 78.0
SHI50386 Sapria himalayana HOM05D001325 ORTHO05D005438 2.8e-29 132.9 90 73.3
SHI48150 Sapria himalayana HOM05D001325 ORTHO05D001540 3.5e-27 125.9 106 65.1
Pp3c21_8460 Physcomitrium patens HOM05D001325 ORTHO05D005438 2.9e-26 122.9 113 58.4
SHI52150 Sapria himalayana HOM05D001325 ORTHO05D001540 1.9e-25 120.2 94 63.8
Nitab4.5_0001770g0040 Nicotiana tabacum HOM05D001325 ORTHO05D005438 2.5e-25 119.8 78 73.1
SHI38210 Sapria himalayana HOM05D001325 ORTHO05D001540 1.0e-23 114.4 127 51.2
SHI36369 Sapria himalayana HOM05D001325 ORTHO05D005438 1.3e-21 107.5 92 66.3
SHI39477 Sapria himalayana HOM05D001325 ORTHO05D005438 1.1e-20 104.4 83 62.7
SHI53369 Sapria himalayana HOM05D001325 ORTHO05D001540 1.8e-20 103.6 59 84.7
SHI36935 Sapria himalayana HOM05D001325 ORTHO05D001540 3.1e-20 102.8 91 59.3
SHI48750 Sapria himalayana HOM05D001325 ORTHO05D005438 3.5e-19 99.4 91 56.0
HanXRQChr16g0504411 Helianthus annuus HOM05D001325 ORTHO05D001540 7.7e-19 98.2 54 85.2
SHI38206 Sapria himalayana HOM05D001325 ORTHO05D001540 3.8e-18 95.9 59 79.7
SHI49794 Sapria himalayana HOM05D001325 ORTHO05D001540 1.9e-17 93.6 91 57.1
SHI38315 Sapria himalayana HOM05D001325 ORTHO05D001540 8.0e-16 88.2 85 52.9
Os12g0423142 Oryza sativa ssp. japonica HOM05D001325 ORTHO05D005438 1.5e-14 84.0 52 78.8
Duzib132G0580 Durio zibethinus HOM05D001325 ORTHO05D005438 6.3e-13 78.6 59 64.4
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 1.4e-12 77.4 50 78.0
SHI40461 Sapria himalayana HOM05D001325 ORTHO05D001540 1.8e-12 77.0 85 54.1
SHI34614 Sapria himalayana HOM05D001325 ORTHO05D005438 2.0e-11 73.6 79 50.6
PGSC0003DMG400004141 Solanum tuberosum HOM05D001325 ORTHO05D017773 2.0e-11 73.6 99 45.5
PGSC0003DMG400029876 Solanum tuberosum HOM05D001325 ORTHO05D017773 2.0e-11 73.6 99 45.5
Medtr2g040140 Medicago truncatula HOM05D001325 ORTHO05D005438 2.7e-11 73.2 112 44.6
LjContig00318g0006081 Lotus japonicus HOM05D001033 ORTHO05D005438 4.5e-11 72.4 109 32.1
Gohir.D04G084000 Gossypium hirsutum HOM05D001033 ORTHO05D005438 1.0e-10 71.2 79 40.5
HanXRQChr12g0370991 Helianthus annuus HOM05D001325 ORTHO05D005438 1.7e-10 70.5 125 41.6
QL93p0270_0001 Quercus lobata HOM05D001033 ORTHO05D005438 1.7e-10 70.5 138 31.2
RcHm_v2.0_CPg0502161 Rosa chinensis HOM05D001033 ORTHO05D005438 1.7e-10 70.5 79 39.2
Glyma.13G068600 Glycine max HOM05D001033 ORTHO05D005438 2.9e-10 69.7 109 32.1
PSO548G0108 Papaver somniferum HOM05D001033 ORTHO05D005438 2.9e-10 69.7 109 32.1
Gohir.D01G102268 Gossypium hirsutum HOM05D001033 ORTHO05D005438 3.8e-10 69.3 79 39.2
Hma1.2p1_2223F.1_g317430 Hydrangea macrophylla HOM05D001033 ORTHO05D005438 3.8e-10 69.3 79 39.2
VMungo0498G0001 Vigna mungo HOM05D001033 ORTHO05D005438 3.8e-10 69.3 79 39.2
Cre08.g378900 Chlamydomonas reinhardtii HOM05D001325 ORTHO05D005438 5.0e-10 68.9 78 42.3
Gohir.D07G155048 Gossypium hirsutum HOM05D001033 ORTHO05D005438 5.0e-10 68.9 79 40.5
CAN.G835.10 Capsicum annuum HOM05D001033 ORTHO05D005438 6.6e-10 68.6 79 39.2
Gohir.1Z049599 Gossypium hirsutum HOM05D001033 ORTHO05D005438 6.6e-10 68.6 79 39.2
Potri.013G163000 Populus trichocarpa HOM05D001033 ORTHO05D005438 6.6e-10 68.6 109 31.2
BolC7t41722H Brassica oleracea HOM05D001033 ORTHO05D005438 8.6e-10 68.2 79 39.2
CAN.G1741.3 Capsicum annuum HOM05D001325 ORTHO05D017773 8.6e-10 68.2 99 41.4
HanXRQChr00c0345g0573911 Helianthus annuus HOM05D001033 ORTHO05D005438 8.6e-10 68.2 89 37.1
HanXRQChr00c0759g0577221 Helianthus annuus HOM05D001033 ORTHO05D005438 8.6e-10 68.2 89 37.1
Lalb_Chr03g0039391 Lupinus albus HOM05D001033 ORTHO05D005438 8.6e-10 68.2 109 31.2
Lalb_Chr07g0192301 Lupinus albus HOM05D001033 ORTHO05D005438 8.6e-10 68.2 109 31.2
Medtr4g051245 Medicago truncatula HOM05D001033 ORTHO05D005438 8.6e-10 68.2 109 31.2
SHI42173 Sapria himalayana HOM05D001325 ORTHO05D001540 8.6e-10 68.2 49 69.4
AL2G20690 Arabidopsis lyrata HOM05D001033 ORTHO05D005438 1.1e-09 67.8 112 32.1
AL2G21100 Arabidopsis lyrata HOM05D001033 ORTHO05D005438 1.1e-09 67.8 112 32.1
AL2G21480 Arabidopsis lyrata HOM05D001033 ORTHO05D005438 1.1e-09 67.8 112 32.1
CAN.G397.97 Capsicum annuum HOM05D001033 ORTHO05D005438 1.1e-09 67.8 79 39.2
Phvul.011G056516 Phaseolus vulgaris HOM05D001033 ORTHO05D005438 1.1e-09 67.8 78 38.5
ATCG00440 Arabidopsis thaliana HOM05D001033 ORTHO05D005438 1.5e-09 67.4 109 31.2
EL10As12g24023 Beta vulgaris HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
EL10As1g23050 Beta vulgaris HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
C02p43490 Brassica napus HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
C09p40500 Brassica napus HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
BolSC45t60863H Brassica oleracea HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
BolSC45t60948H Brassica oleracea HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
BolSC46t60995H Brassica oleracea HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
BolSC46t61040H Brassica oleracea HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
BolSC47t61102H Brassica oleracea HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
BraSC25t45843Z Brassica rapa HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
BraSC25t45872Z Brassica rapa HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
BraSC58t46415Z Brassica rapa HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
BraSC59t46597Z Brassica rapa HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
CARHR282060 Cardamine hirsuta HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
PGR111G0123 Punica granatum HOM05D001033 ORTHO05D005438 1.5e-09 67.4 79 38.0
Thhalv10010825m.g Eutrema salsugineum HOM05D001033 ORTHO05D005438 2.5e-09 66.6 79 38.0
HanXRQChr11g0348981 Helianthus annuus HOM05D001033 ORTHO05D005438 2.5e-09 66.6 89 36.0
HanXRQChr12g0367961 Helianthus annuus HOM05D001325 ORTHO05D005438 2.5e-09 66.6 72 52.8
SalBow1G1818 Salvia bowleyana HOM05D001033 ORTHO05D005438 4.3e-09 65.9 109 30.3
BolC7t41667H Brassica oleracea HOM05D001033 ORTHO05D005438 5.6e-09 65.5 79 38.0
DCAR_032489 Daucus carota HOM05D001033 ORTHO05D005438 5.6e-09 65.5 79 36.7
SMO086G0042 Selaginella moellendorffii HOM05D001033 ORTHO05D005438 5.6e-09 65.5 79 36.7
SMO086G0053 Selaginella moellendorffii HOM05D001033 ORTHO05D005438 5.6e-09 65.5 79 36.7
Nn010s41425 Nelumbo nucifera HOM05D001033 ORTHO05D005438 7.3e-09 65.1 109 31.2
Gohir.A09G102300 Gossypium hirsutum HOM05D001033 ORTHO05D005438 2.1e-08 63.5 109 30.3
Lsat_1_v5_gn_5_16541 Lactuca sativa HOM05D001325 ORTHO05D005438 4.7e-08 62.4 34 79.4
SHI46259 Sapria himalayana HOM05D001325 ORTHO05D005438 4.7e-08 62.4 132 36.4
Oeu028781.1 Olea europaea HOM05D001033 ORTHO05D005438 6.1e-08 62.0 75 38.7
SHI41241 Sapria himalayana HOM05D001325 ORTHO05D005438 6.1e-08 62.0 34 79.4
SHI48902 Sapria himalayana HOM05D001325 ORTHO05D005438 6.1e-08 62.0 34 79.4
Eucgr.A02745 Eucalyptus grandis HOM05D001033 ORTHO05D005438 1.0e-07 61.2 76 35.5
SHI34632 Sapria himalayana HOM05D046920 ORTHO05D369048 1.4e-07 60.8 35 80.0
SabraMtG0001800 Salix brachista HOM05D001325 ORTHO05D001540 4.0e-07 59.3 32 84.4
CAN.G351.18 Capsicum annuum HOM05D001325 ORTHO05D005438 1.2e-06 57.8 32 78.1
HanXRQChr02g0044941 Helianthus annuus HOM05D001033 ORTHO05D002045 4.4e-06 55.8 80 36.2
HanXRQChr07g0201001 Helianthus annuus HOM05D001033 ORTHO05D002045 4.4e-06 55.8 80 36.2
HanXRQChr08g0210311 Helianthus annuus HOM05D001033 ORTHO05D002045 4.4e-06 55.8 80 36.2
HanXRQChr10g0283501 Helianthus annuus HOM05D001033 ORTHO05D002045 4.4e-06 55.8 80 36.2
HanXRQChr10g0289221 Helianthus annuus HOM05D001033 ORTHO05D002045 4.4e-06 55.8 80 36.2
HanXRQChr11g0326771 Helianthus annuus HOM05D001033 ORTHO05D002045 4.4e-06 55.8 80 36.2
HanXRQCPg0579981 Helianthus annuus HOM05D001033 ORTHO05D002045 4.4e-06 55.8 80 36.2
Peaxi162Scf00334g01211 Petunia axillaris HOM05D001033 ORTHO05D002045 4.4e-06 55.8 72 37.5
HanXRQChr02g0041511 Helianthus annuus HOM05D001033 ORTHO05D002045 7.5e-06 55.1 87 34.5


User provided reference genes

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