Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 0.0e+00 1185.2 624 100.0
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 5.5e-294 1013.8 598 91.0
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.9e-262 909.1 597 83.8
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 6.8e-260 900.6 597 82.7
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 3.2e-257 891.7 627 79.1
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 3.2e-241 838.6 577 80.9
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 6.2e-229 797.7 579 76.7
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 9.8e-174 614.4 511 65.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 9.8e-158 561.2 532 57.5
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 4.1e-148 529.3 531 54.6
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.3e-146 524.2 598 51.7
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.3e-146 524.2 634 50.9
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 2.3e-146 523.5 513 58.5
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 6.2e-144 515.4 581 52.8
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 3.1e-143 513.1 510 57.1
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 5.2e-143 512.3 527 55.2
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.2e-142 511.1 588 53.6
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 2.0e-142 510.4 522 56.7
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 5.8e-142 508.8 511 54.8
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 7.6e-142 508.4 585 50.8
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 3.7e-141 506.1 511 54.4
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 8.3e-141 505.0 535 54.0
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.1e-140 504.6 527 54.3
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.9e-140 503.8 522 55.0
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 3.2e-140 503.1 599 50.8
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 2.7e-139 500.0 523 54.1
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 7.8e-139 498.4 616 49.2
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 5.1e-138 495.7 515 54.4
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 8.6e-138 495.0 506 54.0
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 4.3e-137 492.7 588 49.8
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 9.6e-137 491.5 525 53.1
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 9.6e-137 491.5 643 48.4
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.1e-136 490.3 588 49.7
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 1.8e-135 487.3 433 59.1
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.2e-134 484.6 589 48.4
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 7.6e-134 481.9 546 49.5
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 9.9e-134 481.5 534 51.3
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.4e-132 476.9 522 51.9
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 3.0e-130 469.9 512 52.3
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 3.0e-130 469.9 512 52.3
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 8.7e-130 468.4 526 51.5
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 7.3e-129 465.3 532 51.5
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 3.6e-128 463.0 509 52.5
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.1e-127 461.5 531 49.5
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 2.4e-127 460.3 540 50.6
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 1.5e-126 457.6 519 51.1
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 2.6e-126 456.8 521 49.9
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 9.9e-126 454.9 567 48.3
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.2e-125 453.8 509 50.3
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 2.2e-125 453.8 621 45.1
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 3.8e-125 453.0 543 49.9
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 6.4e-125 452.2 525 50.5
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.4e-124 451.1 543 49.5
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 7.1e-124 448.7 564 49.8
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.2e-123 448.0 589 47.5
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.1e-123 447.2 499 51.5
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.3e-122 443.7 451 55.4
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.9e-122 443.0 557 47.6
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 5.1e-122 442.6 617 44.4
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 2.5e-121 440.3 519 49.9
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 7.3e-121 438.7 525 47.6
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.6e-120 437.6 562 47.0
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.4e-119 434.5 434 55.1
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 6.9e-119 432.2 461 53.1
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 9.0e-119 431.8 429 54.8
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.5e-118 431.0 539 47.5
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 2.6e-118 430.3 543 46.8
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 7.6e-118 428.7 535 48.6
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 8.4e-117 425.2 532 48.1
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 6.0e-115 419.1 457 52.7
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 3.0e-114 416.8 426 51.4
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.1e-113 414.8 485 48.9
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.5e-113 414.5 526 47.1
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.6e-112 411.0 528 46.6
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-110 404.4 570 45.1
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 2.9e-109 400.2 515 47.4
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 2.5e-108 397.1 569 43.9
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.2e-108 396.7 550 45.1
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.2e-107 394.8 584 43.8
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.7e-107 393.7 579 43.7
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 6.0e-107 392.5 538 44.8
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.3e-104 384.8 484 45.0
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.8e-104 383.6 498 46.0
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.4e-103 380.6 584 42.6
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 9.0e-103 378.6 628 41.1
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.0e-102 377.5 535 46.2
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 5.0e-101 372.9 499 44.1
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 3.2e-100 370.2 431 51.5
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 1.0e-98 365.2 541 42.0
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 3.0e-98 363.6 526 41.3
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-97 361.7 519 44.3
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 5.7e-97 359.4 403 53.8
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.6e-96 357.8 535 42.6
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 6.3e-96 355.9 504 44.4
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.4e-95 354.8 518 43.1
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.8e-95 354.4 515 42.9
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 3.1e-95 353.6 518 43.1
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 3.1e-95 353.6 518 43.1
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 5.3e-95 352.8 516 42.8
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 5.3e-95 352.8 474 45.4
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.0e-93 348.6 334 54.2
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 3.8e-93 346.7 510 41.6
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.3e-90 337.4 241 68.5
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.1e-84 318.5 514 40.1
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.6e-83 314.7 444 47.3
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 1.0e-82 312.0 535 39.8
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.5e-81 308.1 588 36.1
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.2e-80 304.3 606 36.5
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.4e-79 301.6 509 37.7
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.7e-67 260.0 296 52.7
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 8.0e-67 259.2 328 48.5
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.2e-64 251.1 543 34.6
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 2.8e-64 250.8 192 61.5
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 4.8e-64 250.0 338 46.2
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.2e-62 245.4 170 68.8
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.3e-58 231.1 406 40.1
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.8e-56 224.2 375 41.3
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 2.0e-46 191.4 139 65.5
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.5e-46 190.7 235 43.4
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 3.5e-46 190.7 417 35.5
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 5.9e-46 189.9 277 39.0
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 6.6e-45 186.4 370 36.5
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 6.8e-42 176.4 380 36.1
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.4e-39 167.9 317 35.0
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 7.8e-38 162.9 304 35.2
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.5e-36 158.7 227 40.5
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 3.3e-36 157.5 372 31.5
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 3.7e-32 144.1 275 34.5
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 4.1e-31 140.6 214 37.9
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.2e-30 139.0 89 67.4
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.2e-30 139.0 89 67.4
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.2e-30 139.0 148 50.7
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.9e-24 117.1 215 37.7
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.6e-22 112.1 95 63.2
PGSC0003DMG401012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.0e-21 109.4 105 75.2
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 5.1e-21 107.1 318 27.4
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-20 105.9 295 27.5
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 1.7e-16 92.0 273 28.6
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.2e-16 91.7 138 45.7
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.6e-14 85.5 265 26.0
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.6e-14 85.5 265 26.0
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.6e-14 85.5 265 26.0
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 6.0e-14 83.6 265 25.3
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 6.0e-14 83.6 265 25.3
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 3.4e-09 67.8 54 55.6
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.1e-07 60.1 105 41.0


User provided reference genes

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