Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 4.5e-166 587.8 286 100.0
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 1.1e-140 503.4 274 90.1
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 2.5e-140 502.3 272 89.3
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 6.8e-138 494.2 273 89.7
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 2.3e-122 442.6 278 79.5
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 1.7e-120 436.4 249 85.1
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 2.4e-119 432.6 254 83.5
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 7.0e-119 431.0 276 77.9
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 5.9e-118 427.9 273 77.7
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 2.5e-116 422.5 283 77.0
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 2.5e-116 422.5 256 81.6
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 5.6e-116 421.4 270 80.7
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 1.4e-114 416.8 276 76.1
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 1.8e-114 416.4 258 81.4
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 2.3e-114 416.0 266 78.9
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 3.1e-114 415.6 265 79.2
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 3.1e-114 415.6 256 80.9
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 6.8e-114 414.5 257 79.8
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.2e-113 413.7 288 74.0
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.5e-113 413.3 291 72.5
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 2.0e-113 412.9 287 74.2
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 7.5e-113 411.0 271 76.8
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.3e-112 410.2 272 76.1
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 1.7e-112 409.8 277 75.8
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.2e-112 409.5 274 76.3
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 2.2e-112 409.5 257 79.0
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 2.9e-112 409.1 266 77.1
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 2.9e-112 409.1 269 77.0
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 3.7e-112 408.7 260 79.2
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 3.7e-112 408.7 287 73.2
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 3.7e-112 408.7 287 73.2
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 4.9e-112 408.3 280 74.3
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 6.4e-112 407.9 265 77.4
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 8.3e-112 407.5 262 77.9
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 1.1e-111 407.1 271 76.0
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 1.4e-111 406.8 265 77.0
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 1.9e-111 406.4 271 77.1
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 1.9e-111 406.4 270 77.0
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 4.1e-111 405.2 262 77.5
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 4.1e-111 405.2 255 78.8
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 5.4e-111 404.8 274 74.5
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 1.6e-110 403.3 263 76.0
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.6e-110 403.3 275 74.9
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 1.6e-110 403.3 275 74.5
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 2.7e-110 402.5 274 73.7
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 2.7e-110 402.5 281 73.7
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 3.5e-110 402.1 253 78.3
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 4.6e-110 401.7 273 75.1
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 2.3e-109 399.4 281 73.7
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 3.0e-109 399.1 276 74.3
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 8.6e-109 397.5 276 74.3
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 1.1e-108 397.1 282 72.3
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 1.1e-108 397.1 281 72.6
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 1.5e-108 396.7 263 75.7
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 1.9e-108 396.4 267 73.8
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 2.5e-108 396.0 276 75.7
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 3.3e-108 395.6 256 76.6
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 4.3e-108 395.2 306 66.7
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 5.6e-108 394.8 279 73.1
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 9.5e-108 394.0 265 73.6
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 1.2e-107 393.7 309 68.3
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 1.1e-106 390.6 268 73.9
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 1.1e-106 390.6 269 74.0
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.4e-106 390.2 272 70.6
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 2.0e-105 386.3 263 75.3
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 2.6e-105 386.0 272 72.8
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 7.5e-105 384.4 210 86.2
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.7e-104 383.3 277 71.1
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 4.9e-104 381.7 272 72.1
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 4.9e-104 381.7 261 72.8
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.1e-103 380.6 275 70.5
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 1.3e-101 373.6 255 73.3
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 1.7e-101 373.2 210 82.9
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 1.7e-101 373.2 282 67.7
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 3.0e-101 372.5 276 69.2
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 1.5e-100 370.2 255 72.9
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 1.9e-100 369.8 279 67.4
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 2.5e-100 369.4 251 74.1
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 3.3e-100 369.0 280 68.6
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 9.5e-100 367.5 265 70.2
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 1.6e-99 366.7 278 66.9
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 1.6e-99 366.7 268 69.8
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 4.7e-99 365.2 280 67.9
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 4.7e-99 365.2 280 66.4
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 4.7e-99 365.2 280 66.4
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 6.2e-99 364.8 277 67.9
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 6.2e-99 364.8 280 66.4
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 6.2e-99 364.8 280 66.4
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 6.2e-99 364.8 267 68.9
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 1.1e-98 364.0 284 67.3
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 1.8e-98 363.2 256 71.1
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 5.2e-98 361.7 194 90.2
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 8.9e-98 360.9 268 68.7
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 1.2e-97 360.5 268 68.3
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 4.4e-97 358.6 319 59.9
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 5.8e-97 358.2 287 65.5
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 2.2e-96 356.3 282 66.0
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 3.7e-96 355.5 282 64.9
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 4.9e-96 355.1 286 68.5
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 4.9e-96 355.1 275 67.6
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 1.1e-95 354.0 269 67.3
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 4.6e-94 348.6 211 78.7
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 6.0e-94 348.2 194 86.6
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 1.5e-92 343.6 223 78.9
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 9.6e-92 340.9 276 62.3
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 1.6e-91 340.1 206 77.2
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 5.2e-90 335.1 264 61.7
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 1.2e-89 334.0 282 61.0
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 3.8e-88 328.9 291 60.8
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 4.8e-83 312.0 252 67.5
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 6.4e-80 301.6 264 62.9
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 1.2e-78 297.4 193 75.1
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 2.7e-78 296.2 250 64.8
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 6.2e-75 285.0 192 71.4
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 5.3e-74 282.0 189 74.6
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 9.0e-74 281.2 189 74.6
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 3.4e-73 279.3 253 57.3
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 1.3e-72 277.3 207 65.7
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 4.0e-66 255.8 181 72.9
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 4.5e-65 252.3 271 49.4
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 1.1e-60 237.7 197 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 1.8e-58 230.3 211 55.0
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 2.8e-51 206.5 170 59.4
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 2.7e-46 189.9 200 47.5
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 7.7e-41 171.8 237 45.6
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 5.2e-37 159.1 277 34.7
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.1e-30 137.1 84 82.1
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 9.7e-28 128.3 275 33.1
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 2.2e-27 127.1 170 38.8
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 6.3e-27 125.6 80 80.0
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 6.1e-22 109.0 57 87.7
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 8.0e-22 108.6 54 94.4
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 8.3e-19 98.6 52 88.5
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.1e-07 61.6 147 29.3
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.5e-07 61.2 170 27.1
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.5e-07 60.5 190 27.9
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.5e-07 60.5 190 27.9
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.3e-07 60.1 190 26.3
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 4.3e-07 59.7 181 28.7
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 4.3e-07 59.7 176 27.8
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 5.6e-07 59.3 154 29.2
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 5.6e-07 59.3 189 24.3
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 2.8e-06 57.0 169 26.6
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 3.6e-06 56.6 145 26.2
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 3.6e-06 56.6 182 27.5
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 6.1e-06 55.8 174 27.6
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 6.1e-06 55.8 173 28.9
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 6.1e-06 55.8 171 25.7


User provided reference genes

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