Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000098g0080 Nicotiana tabacum HOM05D005257 ORTHO05D006425 5.7e-302 1040.4 643 100.0
Nitab4.5_0001606g0020 Nicotiana tabacum HOM05D005257 ORTHO05D006425 4.9e-269 931.0 643 86.2
CAN.G732.36 Capsicum annuum HOM05D005257 ORTHO05D006425 3.0e-234 815.5 647 80.7
Solyc03g097280.4 Solanum lycopersicum HOM05D005257 ORTHO05D006425 4.9e-229 798.1 643 71.7
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 3.5e-219 765.4 614 71.2
Peaxi162Scf00117g00415 Petunia axillaris HOM05D005257 ORTHO05D006425 3.7e-200 702.2 650 65.2
Sopen03g028050 Solanum pennellii HOM05D005257 ORTHO05D006425 1.2e-163 580.9 643 58.8
Dinv11935 Davidia involucrata HOM05D005257 ORTHO05D006425 1.3e-141 507.7 676 49.3
Dinv05572 Davidia involucrata HOM05D005257 ORTHO05D006425 3.0e-141 506.5 679 49.6
Cc06_g07290 Coffea canephora HOM05D005257 ORTHO05D006425 2.3e-130 470.3 653 47.3
Lsat_1_v5_gn_9_60281 Lactuca sativa HOM05D005257 ORTHO05D006425 8.1e-123 445.3 497 54.1
SGA_v2.0_scaffold31G12800 Striga asiatica HOM05D005257 ORTHO05D006425 2.6e-121 440.3 666 43.5
Actinidia21524 Actinidia chinensis HOM05D005257 ORTHO05D006425 2.2e-120 437.2 396 61.1
Atru.chr2.1463 Acer truncatum HOM05D005257 ORTHO05D006425 4.2e-119 433.0 708 42.4
DCAR_003248 Daucus carota HOM05D005257 ORTHO05D006425 7.8e-118 428.7 681 43.2
ECA232G0672 Erigeron canadensis HOM05D005257 ORTHO05D006425 1.7e-117 427.6 645 48.5
Hma1.2p1_0768F.1_g215600 Hydrangea macrophylla HOM05D005257 ORTHO05D006425 3.9e-117 426.4 418 59.1
MSTRG.19351 Avicennia marina HOM05D005257 ORTHO05D006425 5.6e-116 422.5 433 56.8
Eucgr.A02125 Eucalyptus grandis HOM05D005257 ORTHO05D006425 8.1e-115 418.7 434 56.5
Duzib177G0708 Durio zibethinus HOM05D005257 ORTHO05D006425 2.0e-113 414.1 488 52.7
Thecc.05G245000 Theobroma cacao HOM05D005257 ORTHO05D006425 2.0e-113 414.1 488 52.0
Oeu044649.1 Olea europaea HOM05D005257 ORTHO05D006425 5.8e-113 412.5 486 51.2
Cfa017688 Carpinus fangiana HOM05D005257 ORTHO05D006425 2.9e-112 410.2 530 50.6
Haze_20460 Corylus avellana HOM05D005257 ORTHO05D006425 2.9e-112 410.2 544 49.3
Gorai.007G258400 Gossypium raimondii HOM05D005257 ORTHO05D006425 1.9e-111 407.5 431 55.5
Gohir.D11G243400 Gossypium hirsutum HOM05D005257 ORTHO05D006425 1.6e-110 404.4 431 55.0
CSS0043158 Camellia sinensis var. sinensis HOM05D005257 ORTHO05D006425 2.7e-110 403.7 381 60.4
CiPaw.09G164800 Carya illinoinensis HOM05D005257 ORTHO05D006425 6.0e-110 402.5 476 51.3
Ciclev10018934m.g Citrus clementina HOM05D005257 ORTHO05D006425 6.0e-110 402.5 431 55.7
Sc10g0005500 Simmondsia chinensis HOM05D005257 ORTHO05D006425 6.0e-110 402.5 398 59.0
vmacro18109 Vaccinium macrocarpon HOM05D005257 ORTHO05D006425 1.0e-109 401.7 482 51.7
HanXRQChr12g0354211 Helianthus annuus HOM05D005257 ORTHO05D006425 1.3e-109 401.4 382 59.9
Nn1g06286 Nelumbo nucifera HOM05D005257 ORTHO05D006425 3.0e-109 400.2 679 43.2
Aqoxy1G00543 Aquilegia oxysepala HOM05D005257 ORTHO05D006425 6.6e-109 399.1 381 58.5
Migut.J00763 Erythranthe guttata HOM05D005257 ORTHO05D006425 1.1e-108 398.3 680 42.8
PGR042G1596 Punica granatum HOM05D005257 ORTHO05D006425 1.9e-108 397.5 405 56.5
Gohir.A11G232100 Gossypium hirsutum HOM05D005257 ORTHO05D006425 7.4e-108 395.6 431 54.1
SalBow3G0128 Salvia bowleyana HOM05D005257 ORTHO05D006425 2.8e-107 393.7 459 50.8
HanXRQChr02g0058981 Helianthus annuus HOM05D005257 ORTHO05D006425 3.6e-107 393.3 399 57.6
Manes.08G154800 Manihot esculenta HOM05D005257 ORTHO05D006425 3.6e-107 393.3 500 50.4
CANSAT35G0669 Cannabis sativa HOM05D005257 ORTHO05D006425 8.1e-107 392.1 480 51.7
THA.LOC104802876 Tarenaya hassleriana HOM05D005257 ORTHO05D006425 8.1e-107 392.1 432 54.2
PSO339G0351 Papaver somniferum HOM05D005257 ORTHO05D006425 1.4e-106 391.3 473 56.4
CsaV3_4G012150 Cucumis sativus L. HOM05D005257 ORTHO05D006425 4.0e-106 389.8 413 57.6
Sed0016053 Sechium edule HOM05D005257 ORTHO05D006425 5.3e-106 389.4 421 53.2
PGR042G3559 Punica granatum HOM05D005257 ORTHO05D006425 1.2e-105 388.3 471 50.7
ClCG04G005430 Citrullus lanatus HOM05D005257 ORTHO05D006425 1.5e-105 387.9 428 52.8
PSO384G0627 Papaver somniferum HOM05D005257 ORTHO05D006425 3.4e-105 386.7 477 54.7
TWI31G1180 Tripterygium wilfordii HOM05D005257 ORTHO05D006425 4.5e-105 386.3 437 54.2
TAR362G1082 Trochodendron aralioides HOM05D005257 ORTHO05D006425 7.6e-105 385.6 394 58.9
MBI05_g42570_MAGBIO Magnolia biondii HOM05D005257 ORTHO05D006425 6.4e-104 382.5 401 59.1
Potri.013G061400 Populus trichocarpa HOM05D005257 ORTHO05D006425 3.2e-103 380.2 452 53.8
Rhsim08G0079300 Rhododendron simsii HOM05D005257 ORTHO05D006425 4.2e-103 379.8 605 45.1
MD12G1008000 Malus domestica HOM05D005257 ORTHO05D006425 7.1e-103 379.0 527 48.2
FvH4_2g11600 Fragaria vesca HOM05D005257 ORTHO05D006425 2.1e-102 377.5 453 51.7
arahy.Tifrunner.gnm1.ann1.JQ1SRI Arachis hypogaea HOM05D005257 ORTHO05D006425 3.5e-102 376.7 501 48.3
FAN27G2011 Fragaria x ananassa HOM05D005257 ORTHO05D006425 3.5e-102 376.7 462 50.4
RcHm_v2.0_Chr6g0270841 Rosa chinensis HOM05D005257 ORTHO05D006425 7.9e-102 375.6 535 46.4
FAN24G1403 Fragaria x ananassa HOM05D005257 ORTHO05D006425 1.3e-101 374.8 453 51.4
Cfa005496 Carpinus fangiana HOM05D005257 ORTHO05D006425 1.8e-101 374.4 413 56.4
FAN15G1561 Fragaria x ananassa HOM05D005257 ORTHO05D006425 1.8e-101 374.4 440 52.0
MELO3C008815.2 Cucumis melo HOM05D005257 ORTHO05D006425 3.0e-101 373.6 438 55.3
CDE10G0660 Ceratophyllum demersum HOM05D005257 ORTHO05D006425 3.3e-100 370.2 392 54.8
arahy.Tifrunner.gnm1.ann1.B386PI Arachis hypogaea HOM05D005257 ORTHO05D006425 9.6e-100 368.6 501 47.5
AUR62039715 Chenopodium quinoa HOM05D005257 ORTHO05D006425 1.1e-98 365.2 405 53.3
Medtr7g086290 Medicago truncatula HOM05D005257 ORTHO05D006425 5.3e-98 362.8 423 52.7
Lj1g0008743 Lotus japonicus HOM05D005257 ORTHO05D006425 9.0e-98 362.1 393 53.2
Phvul.001G113700 Phaseolus vulgaris HOM05D005257 ORTHO05D006425 1.2e-97 361.7 537 44.5
VMungo1383G2809 Vigna mungo HOM05D005257 ORTHO05D006425 1.2e-97 361.7 466 48.9
arahy.Tifrunner.gnm1.ann1.YCKM6W Arachis hypogaea HOM05D005257 ORTHO05D006425 2.6e-97 360.5 513 45.6
Glyma.16G038400 Glycine max HOM05D005257 ORTHO05D006425 2.6e-97 360.5 402 52.2
ATR0697G033 Amborella trichopoda HOM05D005257 ORTHO05D006425 4.5e-97 359.8 482 48.5
Lj1g0012853 Lotus japonicus HOM05D005257 ORTHO05D006425 5.8e-97 359.4 433 50.8
QL07p027173 Quercus lobata HOM05D005257 ORTHO05D006425 1.3e-96 358.2 643 39.8
AUR62036264 Chenopodium quinoa HOM05D005257 ORTHO05D006425 3.8e-96 356.7 451 50.8
Lalb_Chr10g0095341 Lupinus albus HOM05D005257 ORTHO05D006425 3.8e-96 356.7 454 49.8
GSVIVG01029949001 Vitis vinifera HOM05D005257 ORTHO05D006425 3.8e-96 356.7 274 70.1
Glyma.19G114400 Glycine max HOM05D005257 ORTHO05D006425 4.9e-96 356.3 424 50.5
arahy.Tifrunner.gnm1.ann1.DQ02GG Arachis hypogaea HOM05D005257 ORTHO05D006425 1.9e-95 354.4 553 43.8
Prupe.1G541500 Prunus persica HOM05D005257 ORTHO05D006425 4.2e-95 353.2 263 70.3
TPR.G17857 Trifolium pratense HOM05D005257 ORTHO05D006425 4.6e-94 349.7 524 44.8
Psat3g087120 Pisum sativum HOM05D005257 ORTHO05D006425 2.3e-93 347.4 426 49.8
Ca_29914_v3 Cicer arietinum L. HOM05D005257 ORTHO05D006425 3.3e-92 343.6 491 46.0
Ca_08293_v3 Cicer arietinum L. HOM05D005257 ORTHO05D006425 4.3e-92 343.2 402 51.2
HPP92_025446 Vanilla planifolia HOM05D005257 ORTHO05D006425 5.7e-92 342.8 420 49.3
Ah.15g100140 Amaranthus hybridus HOM05D005257 ORTHO05D006425 7.4e-92 342.4 399 52.9
C02p09500 Brassica napus HOM05D005257 ORTHO05D006425 1.6e-91 341.3 424 50.9
Thhalv10012737m.g Eutrema salsugineum HOM05D005257 ORTHO05D006425 5.3e-90 336.3 529 47.4
BcaB05g23293 Brassica carinata HOM05D005257 ORTHO05D006425 9.0e-90 335.5 423 51.5
GSVIVG01027853001 Vitis vinifera HOM05D005257 ORTHO05D006425 9.0e-90 335.5 381 53.8
Lj4C106T9 Lonicera japonica HOM05D005257 ORTHO05D006425 1.5e-89 334.7 662 39.1
BraA02t05418Z Brassica rapa HOM05D005257 ORTHO05D006425 2.6e-89 334.0 414 54.8
A02p04570 Brassica napus HOM05D005257 ORTHO05D006425 3.4e-89 333.6 412 54.1
BolC2t06856H Brassica oleracea HOM05D005257 ORTHO05D006425 1.7e-88 331.3 484 48.6
Aa31LG11G11610 Aethionema arabicum HOM05D005257 ORTHO05D006425 2.9e-88 330.5 462 52.4
AL6G29030 Arabidopsis lyrata HOM05D005257 ORTHO05D006425 8.4e-88 328.9 451 47.2
Carub.0006s1614 Capsella rubella HOM05D005257 ORTHO05D006425 3.2e-87 327.0 441 51.7
Sp6g26340 Schrenkiella parvula HOM05D005257 ORTHO05D006425 1.0e-80 305.4 395 48.1
AT5G17930 Arabidopsis thaliana HOM05D005257 ORTHO05D006425 7.9e-78 295.8 497 43.1
MBI05_g13905_MAGBIO Magnolia biondii HOM05D005257 ORTHO05D006425 7.9e-78 295.8 248 66.5
EL10Ac5g11757 Beta vulgaris HOM05D005257 ORTHO05D006425 3.0e-77 293.9 468 43.4
Cpa.g.sc56.49 Carica papaya HOM05D005257 ORTHO05D006425 5.7e-76 289.7 423 45.4
CARHR195170 Cardamine hirsuta HOM05D005257 ORTHO05D006425 8.2e-75 285.8 270 58.1
Pp3c3_21680 Physcomitrium patens HOM05D005257 ORTHO05D006425 1.0e-72 278.9 492 36.8
Pp3c3_21687 Physcomitrium patens HOM05D005257 ORTHO05D006425 1.0e-72 278.9 492 36.8
Mapoly0135s0015 Marchantia polymorpha HOM05D005257 ORTHO05D006425 1.2e-70 271.9 246 56.5
Sabra13G0054300 Salix brachista HOM05D005257 ORTHO05D006425 7.9e-70 269.2 432 47.0
AagrBONN_evm.TU.Sc2ySwM_340.475 Anthoceros agrestis HOM05D005257 ORTHO05D006425 2.2e-67 261.2 271 50.9
Psat5g302960 Pisum sativum HOM05D005257 ORTHO05D006425 5.2e-61 240.0 238 56.3
Hund03701 Selenicereus undatus HOM05D005257 ORTHO05D006425 2.2e-59 234.6 155 74.8
CBR_g51831 Chara braunii HOM05D005257 ORTHO05D006425 7.7e-57 226.1 269 46.8
Zm00001eb417990 Zea mays HOM05D005257 ORTHO05D006425 7.7e-57 226.1 169 69.2
Hund15057 Selenicereus undatus HOM05D005257 ORTHO05D006425 2.2e-56 224.6 155 73.5
SEGI_16290 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 1.6e-54 218.4 366 39.9
Os05g0147200 Oryza sativa ssp. japonica HOM05D005257 ORTHO05D006425 2.2e-51 208.0 164 67.1
Cre09.g415200 Chlamydomonas reinhardtii HOM05D005257 ORTHO05D006425 1.3e-32 145.6 207 38.6
COL.COLO4_28605 Corchorus olitorius HOM05D005257 ORTHO05D006425 3.4e-28 131.0 155 50.3
SEGI_31243 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 1.7e-27 128.6 107 65.4
MCO03G302 Micromonas commoda HOM05D005257 ORTHO05D006425 4.1e-26 124.0 214 34.6
COL.COLO4_28604 Corchorus olitorius HOM05D005257 ORTHO05D006425 7.8e-25 119.8 244 40.6
CAN.G231.14 Capsicum annuum HOM05D005257 ORTHO05D006425 1.7e-24 118.6 184 54.3
Ah.12g060700 Amaranthus hybridus HOM05D005257 ORTHO05D006425 2.5e-23 114.8 237 38.0
Atru.ctg1436.26 Acer truncatum HOM05D005257 ORTHO05D006425 4.0e-21 107.5 232 29.3
arahy.Tifrunner.gnm1.ann1.N37HG5 Arachis hypogaea HOM05D006740 ORTHO05D008571 4.0e-21 107.5 213 36.6
AagrBONN_evm.TU.Sc2ySwM_344.314 Anthoceros agrestis HOM05D005257 ORTHO05D006425 7.1e-18 96.7 107 45.8
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 8.6e-16 89.7 240 25.8
Hma1.2p1_0768F.1_g215590 Hydrangea macrophylla HOM05D005257 ORTHO05D006425 2.1e-14 85.1 190 36.8
PGSC0003DMG400038555 Solanum tuberosum HOM05D005257 ORTHO05D006425 2.8e-14 84.7 51 84.3
Ah.12g064660 Amaranthus hybridus HOM05D005257 ORTHO05D006425 3.8e-11 74.3 62 64.5
SEGI_10502 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 1.4e-10 72.4 147 36.7
FAN27G2161 Fragaria x ananassa HOM05D005257 ORTHO05D006425 7.8e-09 66.6 145 36.6
SEGI_02339 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 8.6e-08 63.2 110 38.2
CAN.G531.12 Capsicum annuum HOM05D005257 ORTHO05D006425 4.3e-07 60.8 118 55.9


User provided reference genes

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