Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000085g0100 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.4e-72 276.2 142 100.0
CAN.G85.21 Capsicum annuum HOM05D000435 ORTHO05D016180 2.1e-63 245.7 157 82.8
Peaxi162Scf00139g01031 Petunia axillaris HOM05D000435 ORTHO05D000430 4.3e-53 211.5 212 57.1
CAN.G1109.6 Capsicum annuum HOM05D000435 ORTHO05D016180 9.1e-51 203.8 114 88.6
CAN.G623.32 Capsicum annuum HOM05D000435 ORTHO05D000430 2.6e-50 202.2 212 56.1
Nitab4.5_0001152g0690 Nicotiana tabacum HOM05D000435 ORTHO05D013824 2.9e-49 198.7 111 89.2
Nitab4.5_0000152g0410 Nicotiana tabacum HOM05D000435 ORTHO05D000430 6.5e-49 197.6 213 55.4
Solyc07g065770.3 Solanum lycopersicum HOM05D000435 ORTHO05D013824 1.4e-48 196.4 212 55.2
Nitab4.5_0005853g0060 Nicotiana tabacum HOM05D068302 ORTHO05D013824 4.2e-48 194.9 108 91.7
Sopen07g033980 Solanum pennellii HOM05D003572 ORTHO05D004118 7.9e-47 190.7 209 55.0
Nitab4.5_0000172g2200 Nicotiana tabacum HOM05D000435 ORTHO05D013824 2.3e-46 189.1 109 86.2
CAN.G1.3 Capsicum annuum HOM05D000435 ORTHO05D016180 4.8e-44 181.4 111 84.7
Nitab4.5_0008300g0010 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.2e-42 176.8 154 64.9
Nitab4.5_0010643g0020 Nicotiana tabacum HOM05D000435 ORTHO05D000430 2.6e-42 175.6 213 52.1
CAN.G131.13 Capsicum annuum HOM05D044362 ORTHO05D016180 7.7e-42 174.1 141 70.2
Dinv10357 Davidia involucrata HOM05D000435 ORTHO05D000430 2.2e-41 172.6 214 50.0
Nitab4.5_0001152g0100 Nicotiana tabacum HOM05D000435 ORTHO05D016180 5.5e-40 167.9 162 59.3
PGSC0003DMG400022268 Solanum tuberosum HOM05D003572 ORTHO05D004118 5.5e-40 167.9 191 53.9
DCAR_017069 Daucus carota HOM05D000435 ORTHO05D000430 2.1e-39 166.0 213 48.8
CSS0004404 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 5.2e-38 161.4 212 49.1
CSS0032781 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 5.2e-38 161.4 212 49.1
Nitab4.5_0000172g0070 Nicotiana tabacum HOM05D000435 ORTHO05D016180 9.7e-37 157.1 139 66.2
Cpa.g.sc12.135 Carica papaya HOM05D000435 ORTHO05D000430 6.3e-36 154.5 211 48.3
QL08p003237 Quercus lobata HOM05D000435 ORTHO05D000430 3.1e-35 152.1 214 44.4
Sabra16G0243600 Salix brachista HOM05D000435 ORTHO05D000430 4.1e-35 151.8 214 45.3
Potri.001G370600 Populus trichocarpa HOM05D000435 ORTHO05D000430 9.1e-35 150.6 215 45.6
Manes.03G143200 Manihot esculenta HOM05D000435 ORTHO05D000430 2.0e-34 149.4 214 45.8
CiPaw.11G206300 Carya illinoinensis HOM05D000435 ORTHO05D000430 2.6e-34 149.1 214 45.8
Atru.chr2.3749 Acer truncatum HOM05D000435 ORTHO05D000430 4.5e-34 148.3 213 45.5
Atru.chr2.3763 Acer truncatum HOM05D000435 ORTHO05D000430 4.5e-34 148.3 213 45.5
DCAR_013252 Daucus carota HOM05D000435 ORTHO05D000430 7.7e-34 147.5 214 44.9
Duzib170G0379 Durio zibethinus HOM05D000435 ORTHO05D000430 1.0e-33 147.1 113 68.1
GSVIVG01014733001 Vitis vinifera HOM05D000435 ORTHO05D000430 1.0e-33 147.1 214 44.4
Gohir.A08G025300 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.3e-33 146.7 216 44.9
Gohir.D08G035800 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.3e-33 146.7 216 44.9
Gorai.004G033800 Gossypium raimondii HOM05D000435 ORTHO05D000430 1.3e-33 146.7 216 44.9
Prupe.6G027000 Prunus persica HOM05D000435 ORTHO05D000430 1.3e-33 146.7 213 44.6
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 2.2e-33 146.0 210 44.8
Cfa016927 Carpinus fangiana HOM05D000435 ORTHO05D000430 2.9e-33 145.6 214 45.8
MD11G1036200 Malus domestica HOM05D000435 ORTHO05D000430 3.8e-33 145.2 208 44.7
TWI39G0143 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 8.5e-33 144.1 215 45.1
Lj1A893T55 Lonicera japonica HOM05D000435 ORTHO05D000430 1.1e-32 143.7 214 44.9
Potri.011G094650 Populus trichocarpa HOM05D000435 ORTHO05D000430 1.1e-32 143.7 202 46.5
Thecc.07G008500 Theobroma cacao HOM05D000435 ORTHO05D000430 1.1e-32 143.7 214 44.4
Glyma.14G012000 Glycine max HOM05D000435 ORTHO05D000430 1.9e-32 142.9 116 63.8
Lalb_Chr10g0107501 Lupinus albus HOM05D000435 ORTHO05D000430 1.9e-32 142.9 213 41.8
RcHm_v2.0_Chr5g0075901 Rosa chinensis HOM05D000435 ORTHO05D000430 5.5e-32 141.4 214 44.9
Sc03g0011590 Simmondsia chinensis HOM05D000435 ORTHO05D000430 9.4e-32 140.6 210 43.3
LjContig00081g0009877 Lotus japonicus HOM05D000435 ORTHO05D000430 1.2e-31 140.2 214 40.2
AUR62017136 Chenopodium quinoa HOM05D000435 ORTHO05D000430 1.6e-31 139.8 214 43.5
Nitab4.5_0001152g0130 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.6e-31 139.8 111 67.6
SGA_v2.0_scaffold171G38846 Striga asiatica HOM05D000435 ORTHO05D000430 1.6e-31 139.8 214 43.9
Phvul.008G280800 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 2.7e-31 139.0 214 40.2
Actinidia03625 Actinidia chinensis HOM05D000435 ORTHO05D000430 3.6e-31 138.7 205 43.9
Haze_09858 Corylus avellana HOM05D000435 ORTHO05D000430 3.6e-31 138.7 215 45.1
Migut.M01629 Erythranthe guttata HOM05D000435 ORTHO05D000430 4.7e-31 138.3 214 44.4
CAN.G78.6 Capsicum annuum HOM05D000435 ORTHO05D013824 6.1e-31 137.9 71 94.4
Glyma.02G302200 Glycine max HOM05D000435 ORTHO05D000430 6.1e-31 137.9 214 40.2
Psat0s4150g0240 Pisum sativum HOM05D000435 ORTHO05D000430 6.1e-31 137.9 115 62.6
Ca_06413_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 8.0e-31 137.5 215 39.5
Oeu005470.2 Olea europaea HOM05D000435 ORTHO05D000430 8.0e-31 137.5 196 46.4
VMungo0647G0856 Vigna mungo HOM05D000435 ORTHO05D000430 4.0e-30 135.2 116 60.3
CAN.G1.23 Capsicum annuum HOM05D000435 ORTHO05D016180 8.8e-30 134.0 181 48.1
COL.COLO4_07733 Corchorus olitorius HOM05D003572 ORTHO05D004118 1.2e-29 133.7 116 68.1
ECA236G1471 Erigeron canadensis HOM05D000435 ORTHO05D000430 1.2e-29 133.7 215 41.9
Ciclev10010223m.g Citrus clementina HOM05D000435 ORTHO05D000430 1.5e-29 133.3 212 43.9
AUR62035671 Chenopodium quinoa HOM05D000435 ORTHO05D000430 2.6e-29 132.5 214 41.6
Nitab4.5_0000085g0110 Nicotiana tabacum HOM05D000435 ORTHO05D013824 3.3e-29 132.1 75 89.3
EL10Ac4g07534 Beta vulgaris HOM05D000435 ORTHO05D000430 4.4e-29 131.7 215 40.9
CAN.G72.11 Capsicum annuum HOM05D000435 ORTHO05D013824 1.3e-28 130.2 71 90.1
FAN25G2805 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.3e-28 130.2 204 43.1
FvH4_3g42410 Fragaria vesca HOM05D000435 ORTHO05D000430 2.2e-28 129.4 214 42.1
FAN11G3608 Fragaria x ananassa HOM05D000435 ORTHO05D000430 2.2e-28 129.4 214 42.1
FAN28G0967 Fragaria x ananassa HOM05D000435 ORTHO05D000430 2.2e-28 129.4 214 42.1
Eucgr.F03676 Eucalyptus grandis HOM05D000435 ORTHO05D000430 4.8e-28 128.3 214 38.8
arahy.Tifrunner.gnm1.ann1.64V7P3 Arachis hypogaea HOM05D000435 ORTHO05D000430 6.3e-28 127.9 115 60.9
THA.LOC104815690 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 6.3e-28 127.9 205 42.9
Nitab4.5_0008535g0030 Nicotiana tabacum HOM05D000435 ORTHO05D013824 8.2e-28 127.5 67 92.5
FAN16G3565 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.1e-27 127.1 214 41.6
TPR.G1291 Trifolium pratense HOM05D000435 ORTHO05D000430 1.8e-27 126.3 115 56.5
Medtr5g096390 Medicago truncatula HOM05D000435 ORTHO05D000430 4.1e-27 125.2 115 59.1
CAN.G1485.3 Capsicum annuum HOM05D000435 ORTHO05D013824 5.3e-27 124.8 71 85.9
Lsat_1_v5_gn_7_114141 Lactuca sativa HOM05D000435 ORTHO05D000430 7.0e-27 124.4 217 40.1
Ca_12447_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 1.2e-26 123.6 110 64.5
PSO541G1261 Papaver somniferum HOM05D000435 ORTHO05D000430 1.2e-26 123.6 119 58.8
arahy.Tifrunner.gnm1.ann1.D8MFXN Arachis hypogaea HOM05D000435 ORTHO05D000430 2.0e-26 122.9 111 58.6
PSO675G1718 Papaver somniferum HOM05D000435 ORTHO05D000430 2.0e-26 122.9 119 58.0
HanXRQChr11g0334421 Helianthus annuus HOM05D000435 ORTHO05D000430 2.7e-26 122.5 210 39.5
Rhsim04G0010800 Rhododendron simsii HOM05D000435 ORTHO05D000430 6.5e-25 117.9 211 42.7
Aqoxy3G03979 Aquilegia oxysepala HOM05D000435 ORTHO05D000430 8.5e-25 117.5 210 37.6
CANSAT11G0821 Cannabis sativa HOM05D000435 ORTHO05D000430 2.5e-24 115.9 218 39.4
Sed0013125 Sechium edule HOM05D000435 ORTHO05D000430 1.2e-23 113.6 214 36.4
Nitab4.5_0001788g0220 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.4e-22 110.2 93 66.7
Nn2g15498 Nelumbo nucifera HOM05D000435 ORTHO05D000430 2.3e-22 109.4 208 35.1
vmacro09627 Vaccinium macrocarpon HOM05D000435 ORTHO05D000430 3.0e-22 109.0 248 36.3
Lalb_Chr20g0114061 Lupinus albus HOM05D000435 ORTHO05D000430 1.5e-21 106.7 109 55.0
Cc05_g15220 Coffea canephora HOM05D000435 ORTHO05D000430 5.7e-21 104.8 211 38.9
VMungo0540G1677 Vigna mungo HOM05D003572 ORTHO05D004118 7.5e-21 104.4 113 51.3
Phvul.006G059212 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 9.8e-21 104.0 109 53.2
CARHR087810 Cardamine hirsuta HOM05D000435 ORTHO05D000430 2.8e-20 102.4 194 38.7
Nitab4.5_0000330g0090 Nicotiana tabacum HOM05D000435 ORTHO05D285482 6.3e-20 101.3 82 70.7
Sp3g11390 Schrenkiella parvula HOM05D000435 ORTHO05D000430 8.3e-20 100.9 194 38.7
AL3G24980 Arabidopsis lyrata HOM05D000435 ORTHO05D000430 1.8e-19 99.8 194 38.7
ClCG10G004470 Citrullus lanatus HOM05D000435 ORTHO05D000430 1.8e-19 99.8 217 33.6
Thhalv10020198m.g Eutrema salsugineum HOM05D000435 ORTHO05D000430 2.4e-19 99.4 194 37.6
Lj6g0002997 Lotus japonicus HOM05D000435 ORTHO05D000430 2.4e-19 99.4 109 54.1
Glyma.18G074800 Glycine max HOM05D000435 ORTHO05D000430 3.1e-19 99.0 109 50.5
Aa31LG8G420 Aethionema arabicum HOM05D000435 ORTHO05D000430 4.1e-19 98.6 209 34.9
Carub.0003s1257 Capsella rubella HOM05D000435 ORTHO05D000430 4.1e-19 98.6 194 38.1
HanXRQChr04g0114551 Helianthus annuus HOM05D000435 ORTHO05D000430 7.0e-19 97.8 209 38.3
AT3G13220 Arabidopsis thaliana HOM05D000435 ORTHO05D000430 1.6e-18 96.7 194 37.6
CsaV3_3G004300 Cucumis sativus L. HOM05D000435 ORTHO05D000430 1.6e-18 96.7 220 34.5
MBI15_g38526_MAGBIO Magnolia biondii HOM05D000435 ORTHO05D000430 7.7e-18 94.4 210 36.2
A01p40340 Brassica napus HOM05D000435 ORTHO05D000430 3.8e-17 92.0 194 37.6
C01p51870 Brassica napus HOM05D000435 ORTHO05D000430 3.8e-17 92.0 194 37.6
BolC1t05135H Brassica oleracea HOM05D000435 ORTHO05D000430 3.8e-17 92.0 194 37.6
BraA01t04069Z Brassica rapa HOM05D000435 ORTHO05D000430 3.8e-17 92.0 194 37.6
arahy.Tifrunner.gnm1.ann1.1C3JIX Arachis hypogaea HOM05D000435 ORTHO05D000430 1.5e-16 90.1 123 47.2
BcaB04g21003 Brassica carinata HOM05D000435 ORTHO05D000430 1.9e-16 89.7 194 37.1
arahy.Tifrunner.gnm1.ann1.2NP6SE Arachis hypogaea HOM05D000435 ORTHO05D000430 5.5e-16 88.2 112 48.2
FAN21G0356 Fragaria x ananassa HOM05D000435 ORTHO05D000430 7.2e-16 87.8 214 34.1
Nitab4.5_0002312g0050 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.6e-15 86.7 51 76.5
MELO3C014121.2 Cucumis melo HOM05D000435 ORTHO05D000430 4.7e-15 85.1 120 45.8
Sp1g41420 Schrenkiella parvula HOM05D000435 ORTHO05D371061 6.8e-14 81.3 186 34.9
ATR0751G105 Amborella trichopoda HOM05D000435 ORTHO05D000430 4.9e-12 75.1 209 31.6
TPR.G1281 Trifolium pratense HOM05D000435 ORTHO05D013824 1.8e-11 73.2 49 67.3
CAN.G390.26 Capsicum annuum HOM05D000435 ORTHO05D016180 7.0e-11 71.2 40 85.0
CDE02G3494 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 3.5e-10 68.9 210 31.9
Nitab4.5_0002072g0130 Nicotiana tabacum HOM05D000435 ORTHO05D013824 3.5e-10 68.9 40 77.5
SalBow8G3343 Salvia bowleyana HOM05D000435 ORTHO05D000430 1.5e-08 63.5 164 31.7
SalBow8G4079 Salvia bowleyana HOM05D000435 ORTHO05D000430 1.5e-08 63.5 164 31.7
PGR031G0181 Punica granatum HOM05D000435 ORTHO05D000430 6.1e-07 58.2 75 46.7


User provided reference genes

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