Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000072g0400 Nicotiana tabacum HOM05D004403 ORTHO05D006164 0.0e+00 2035.8 1021 100.0
Solyc03g007100.3 Solanum lycopersicum HOM05D004403 ORTHO05D006164 0.0e+00 1543.9 1134 72.2
CAN.G916.4 Capsicum annuum HOM05D004403 ORTHO05D006164 0.0e+00 1535.8 1152 70.9
Sopen03g003090 Solanum pennellii HOM05D004403 ORTHO05D006164 0.0e+00 1531.9 1156 70.7
Nitab4.5_0009404g0010 Nicotiana tabacum HOM05D004403 ORTHO05D006164 0.0e+00 1522.3 1102 74.9
Peaxi162Scf00192g01018 Petunia axillaris HOM05D004403 ORTHO05D006164 0.0e+00 1488.8 1108 72.1
Actinidia25041 Actinidia chinensis HOM05D004403 ORTHO05D006164 0.0e+00 1286.2 1162 59.6
Hma1.2p1_0099F.1_g048870 Hydrangea macrophylla HOM05D004403 ORTHO05D006164 0.0e+00 1270.4 1160 59.4
CSS0005074 Camellia sinensis var. sinensis HOM05D004403 ORTHO05D006164 0.0e+00 1260.0 1118 60.6
Thecc.03G162000 Theobroma cacao HOM05D004403 ORTHO05D006164 0.0e+00 1246.5 1161 57.5
Oeu021730.2 Olea europaea HOM05D004403 ORTHO05D006164 0.0e+00 1244.6 1179 58.4
Prupe.2G282700 Prunus persica HOM05D004403 ORTHO05D006164 0.0e+00 1244.2 1164 57.6
Gorai.006G065300 Gossypium raimondii HOM05D004403 ORTHO05D006164 0.0e+00 1231.9 1162 57.0
Migut.F01168 Erythranthe guttata HOM05D004403 ORTHO05D006164 0.0e+00 1227.2 1160 59.1
Cc02_g03860 Coffea canephora HOM05D004403 ORTHO05D006164 0.0e+00 1226.5 1208 55.8
Gohir.D09G045100 Gossypium hirsutum HOM05D004403 ORTHO05D006164 0.0e+00 1224.9 1162 56.6
Nn1g01207 Nelumbo nucifera HOM05D004403 ORTHO05D006164 0.0e+00 1224.2 1119 58.4
TWI39G0431 Tripterygium wilfordii HOM05D004403 ORTHO05D006164 0.0e+00 1224.2 1158 57.0
MD01G1186100 Malus domestica HOM05D004403 ORTHO05D006164 0.0e+00 1223.8 1169 56.6
GSVIVG01018506001 Vitis vinifera HOM05D004403 ORTHO05D006164 0.0e+00 1223.0 1163 56.9
Gohir.A09G043600 Gossypium hirsutum HOM05D004403 ORTHO05D006164 0.0e+00 1221.8 1162 56.5
SalBow2G1183 Salvia bowleyana HOM05D004403 ORTHO05D006164 0.0e+00 1219.9 1168 57.3
CiPaw.04G063300 Carya illinoinensis HOM05D004403 ORTHO05D006164 0.0e+00 1219.1 1156 57.5
Cfa008231 Carpinus fangiana HOM05D004403 ORTHO05D006164 0.0e+00 1216.8 1162 57.7
RcHm_v2.0_Chr1g0375181 Rosa chinensis HOM05D004403 ORTHO05D006164 0.0e+00 1208.4 1160 56.6
QL12p039581 Quercus lobata HOM05D004403 ORTHO05D006164 0.0e+00 1204.9 1227 55.4
Rhsim03G0172000 Rhododendron simsii HOM05D004403 ORTHO05D006164 0.0e+00 1204.5 1324 51.7
FAN10G1553 Fragaria x ananassa HOM05D004403 ORTHO05D006164 0.0e+00 1196.8 1152 56.7
Ciclev10004147m.g Citrus clementina HOM05D004403 ORTHO05D006164 0.0e+00 1195.6 1163 56.4
FvH4_7g28210 Fragaria vesca HOM05D004403 ORTHO05D006164 0.0e+00 1194.9 1155 56.5
FAN03G1790 Fragaria x ananassa HOM05D004403 ORTHO05D006164 0.0e+00 1194.1 1158 56.3
FAN06G1852 Fragaria x ananassa HOM05D004403 ORTHO05D006164 0.0e+00 1192.9 1155 56.4
PGR142G2186 Punica granatum HOM05D004403 ORTHO05D006164 0.0e+00 1191.0 1161 55.8
Glyma.16G203900 Glycine max HOM05D004403 ORTHO05D006164 0.0e+00 1189.5 1156 56.3
FAN03G0558 Fragaria x ananassa HOM05D004403 ORTHO05D006164 0.0e+00 1188.3 1155 56.1
FAN01G1597 Fragaria x ananassa HOM05D004403 ORTHO05D006164 0.0e+00 1187.9 1156 56.0
FAN06G4744 Fragaria x ananassa HOM05D004403 ORTHO05D006164 0.0e+00 1186.0 1155 56.0
Lj8C36G18 Lonicera japonica HOM05D004403 ORTHO05D006164 0.0e+00 1182.5 1156 56.6
EL10Ac3g05779 Beta vulgaris HOM05D004403 ORTHO05D006164 0.0e+00 1181.8 1157 54.5
Glyma.09G153100 Glycine max HOM05D004403 ORTHO05D006164 0.0e+00 1181.4 1158 55.9
DCAR_005517 Daucus carota HOM05D004403 ORTHO05D006164 0.0e+00 1179.5 1159 56.2
DCAR_016012 Daucus carota HOM05D004403 ORTHO05D006164 0.0e+00 1177.9 1158 55.7
arahy.Tifrunner.gnm1.ann1.ZK7SIQ Arachis hypogaea HOM05D004403 ORTHO05D006164 0.0e+00 1176.4 1168 55.0
arahy.Tifrunner.gnm1.ann1.R8RU34 Arachis hypogaea HOM05D004403 ORTHO05D006164 0.0e+00 1175.2 1178 54.8
Sabra12G0011100 Salix brachista HOM05D004403 ORTHO05D006164 0.0e+00 1174.5 1158 55.7
Potri.012G022700 Populus trichocarpa HOM05D004403 ORTHO05D006164 0.0e+00 1172.9 1158 55.8
Hund11791 Selenicereus undatus HOM05D004403 ORTHO05D006164 0.0e+00 1171.0 1160 54.7
MBI04_g32240_MAGBIO Magnolia biondii HOM05D004403 ORTHO05D006164 0.0e+00 1169.8 1160 55.2
Lalb_Chr03g0033081 Lupinus albus HOM05D004403 ORTHO05D006164 0.0e+00 1168.7 1160 55.1
Eucgr.K00143 Eucalyptus grandis HOM05D004403 ORTHO05D006164 0.0e+00 1166.4 1159 54.8
VMungo0464G1100 Vigna mungo HOM05D004403 ORTHO05D006164 0.0e+00 1166.0 1177 54.5
SGA_v2.0_scaffold303G47887 Striga asiatica HOM05D004403 ORTHO05D006164 0.0e+00 1164.8 1214 54.2
MELO3C008722.2 Cucumis melo HOM05D004403 ORTHO05D006164 0.0e+00 1163.7 1160 54.9
Sc17g0003760 Simmondsia chinensis HOM05D004403 ORTHO05D006164 0.0e+00 1163.7 1164 54.1
Ah.07g208350 Amaranthus hybridus HOM05D004403 ORTHO05D006164 0.0e+00 1162.9 1191 53.5
CsaV3_2G009710 Cucumis sativus L. HOM05D004403 ORTHO05D006164 0.0e+00 1160.6 1160 54.8
PSO782G0596 Papaver somniferum HOM05D004403 ORTHO05D006164 0.0e+00 1159.8 1168 55.0
Sed0016961 Sechium edule HOM05D004403 ORTHO05D006164 0.0e+00 1155.6 1162 54.8
PSO478G4614 Papaver somniferum HOM05D004403 ORTHO05D006164 0.0e+00 1154.8 1168 54.7
vmacro06764 Vaccinium macrocarpon HOM05D004403 ORTHO05D006164 0.0e+00 1154.8 1395 48.7
Lj2g0001335 Lotus japonicus HOM05D004403 ORTHO05D006164 0.0e+00 1153.7 1163 54.6
AUR62035037 Chenopodium quinoa HOM05D004403 ORTHO05D006164 0.0e+00 1151.0 1196 52.3
Aqoxy7G00599 Aquilegia oxysepala HOM05D004403 ORTHO05D006164 0.0e+00 1147.1 1174 54.1
AL8G25910 Arabidopsis lyrata HOM05D004403 ORTHO05D006164 0.0e+00 1146.7 1161 53.9
ECA233G5768 Erigeron canadensis HOM05D004403 ORTHO05D006164 0.0e+00 1146.0 1154 55.1
Sp6g13860 Schrenkiella parvula HOM05D004403 ORTHO05D006164 0.0e+00 1144.0 1165 53.7
THA.LOC104825074 Tarenaya hassleriana HOM05D004403 ORTHO05D006164 0.0e+00 1143.6 1163 54.3
A02p12180 Brassica napus HOM05D004403 ORTHO05D006164 0.0e+00 1140.9 1165 54.1
BraA02t06282Z Brassica rapa HOM05D004403 ORTHO05D006164 0.0e+00 1140.9 1165 54.1
AT5G51660 Arabidopsis thaliana HOM05D004403 ORTHO05D006164 0.0e+00 1139.4 1162 53.5
BcaB05g23994 Brassica carinata HOM05D004403 ORTHO05D006164 0.0e+00 1139.4 1162 54.0
Ca_26390_v3 Cicer arietinum L. HOM05D004403 ORTHO05D006164 0.0e+00 1139.0 1160 54.1
Lsat_1_v5_gn_8_8061 Lactuca sativa HOM05D004403 ORTHO05D006164 0.0e+00 1135.6 1159 54.5
Medtr6g461810 Medicago truncatula HOM05D004403 ORTHO05D006164 0.0e+00 1133.2 1161 53.5
BcaC03g14584 Brassica carinata HOM05D004403 ORTHO05D006164 0.0e+00 1132.9 1165 53.6
BolC2t08162H Brassica oleracea HOM05D004403 ORTHO05D006164 0.0e+00 1132.9 1165 53.6
Thhalv10012441m.g Eutrema salsugineum HOM05D004403 ORTHO05D006164 0.0e+00 1130.9 1162 53.2
Aa31LG3G8090 Aethionema arabicum HOM05D004403 ORTHO05D006164 0.0e+00 1129.4 1160 53.5
C02p20300 Brassica napus HOM05D004403 ORTHO05D006164 0.0e+00 1129.4 1165 53.5
Carub.0008s1166 Capsella rubella HOM05D004403 ORTHO05D006164 0.0e+00 1129.4 1164 53.2
Duzib205G1350 Durio zibethinus HOM05D004403 ORTHO05D006164 0.0e+00 1126.7 1162 53.9
HanXRQChr08g0214911 Helianthus annuus HOM05D004403 ORTHO05D006164 0.0e+00 1123.2 1154 54.3
Haze_13825 Corylus avellana HOM05D004403 ORTHO05D006164 0.0e+00 1099.7 1284 50.5
ATR0810G058 Amborella trichopoda HOM05D004403 ORTHO05D006164 0.0e+00 1089.7 1166 50.9
AUR62016090 Chenopodium quinoa HOM05D004403 ORTHO05D006164 1.2e-309 1066.6 1120 51.9
unitig_0.g469 Utricularia gibba HOM05D004403 ORTHO05D006164 1.6e-303 1046.2 1153 51.8
Manes.06G138300 Manihot esculenta HOM05D004403 ORTHO05D006164 6.7e-289 997.7 1015 54.5
Phvul.004G126600 Phaseolus vulgaris HOM05D004403 ORTHO05D006164 5.0e-284 981.5 1002 54.6
Zm00001eb086790 Zea mays HOM05D004403 ORTHO05D006164 1.4e-281 973.4 1160 49.5
TPR.G10680 Trifolium pratense HOM05D004403 ORTHO05D006164 2.2e-279 966.1 1083 50.0
COL.COLO4_14184 Corchorus olitorius HOM05D004403 ORTHO05D006164 2.0e-264 916.4 992 52.3
TAR375G1017 Trochodendron aralioides HOM05D004403 ORTHO05D006164 8.8e-257 891.0 868 56.9
Mapoly0021s0083 Marchantia polymorpha HOM05D004403 ORTHO05D006164 1.6e-229 800.4 1168 41.6
Atru.chr1.628 Acer truncatum HOM05D004403 ORTHO05D006164 2.3e-228 796.6 627 64.8
AagrBONN_evm.TU.Sc2ySwM_228.3689 Anthoceros agrestis HOM05D004403 ORTHO05D006164 1.0e-220 771.2 1191 40.2
Pp3c11_8810 Physcomitrium patens HOM05D004403 ORTHO05D006164 5.1e-220 768.8 1204 39.5
Dinv22934 Davidia involucrata HOM05D004403 ORTHO05D006164 4.3e-219 765.8 515 74.0
Cpa.g.sc3.264 Carica papaya HOM05D004403 ORTHO05D006164 4.2e-214 749.2 638 61.6
SMO356G0002 Selaginella moellendorffii HOM05D004403 ORTHO05D006164 3.9e-196 689.5 1169 36.6
CARHR264420 Cardamine hirsuta HOM05D004403 ORTHO05D006164 4.9e-191 672.5 774 50.1
ClCG09G013380 Citrullus lanatus HOM05D004403 ORTHO05D006164 2.6e-168 597.0 681 50.2
Psat1g115160 Pisum sativum HOM05D004403 ORTHO05D006164 5.2e-164 582.8 480 61.7
CBR_g28568 Chara braunii HOM05D004403 ORTHO05D006164 1.2e-155 555.1 1446 29.3
Psat1g115120 Pisum sativum HOM05D004403 ORTHO05D006164 7.5e-155 552.4 680 48.2
CDE12G0311 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 5.5e-150 536.2 560 53.0
Cpa.g.sc3.267 Carica papaya HOM05D004403 ORTHO05D006164 1.2e-115 422.2 398 58.3
TAR375G0129 Trochodendron aralioides HOM05D004403 ORTHO05D006164 9.9e-99 365.9 278 65.8
HPP92_003526 Vanilla planifolia HOM05D004403 ORTHO05D006164 3.0e-95 354.4 487 45.8
ClCG09G013360 Citrullus lanatus HOM05D004403 ORTHO05D006164 4.2e-89 334.0 264 61.4
CARHR264430 Cardamine hirsuta HOM05D004403 ORTHO05D006164 1.6e-88 332.0 291 58.8
CDE12G0406 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 1.3e-79 302.4 260 59.2
Thecc.05G209000 Theobroma cacao HOM05D004403 ORTHO05D006164 3.4e-75 287.7 260 58.5
Thecc.05G208700 Theobroma cacao HOM05D004403 ORTHO05D037589 1.0e-74 286.2 394 45.4
HPP92_003516 Vanilla planifolia HOM05D004403 ORTHO05D006164 4.9e-74 283.9 245 57.1
MCO07G456 Micromonas commoda HOM05D004403 ORTHO05D006164 1.1e-70 272.7 1119 24.4
Dinv02141 Davidia involucrata HOM05D004403 ORTHO05D006164 8.2e-69 266.5 183 68.3
MD07G1258300 Malus domestica HOM05D004403 ORTHO05D006164 2.2e-66 258.5 233 57.5
RhsimUnG0154200 Rhododendron simsii HOM05D000504 ORTHO05D000403 2.4e-60 238.4 255 51.8
SHI13862 Sapria himalayana HOM05D004403 ORTHO05D006164 2.4e-60 238.4 214 52.3
CDE12G0834 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 1.0e-55 223.0 225 52.9
PRCOL_00006166 Prasinoderma coloniale HOM05D004403 ORTHO05D006164 3.8e-50 204.5 1127 23.4
Hma1.2p1_0099F.1_g048890 Hydrangea macrophylla HOM05D004403 ORTHO05D006164 6.5e-50 203.8 163 63.2
Dinv02142 Davidia involucrata HOM05D004403 ORTHO05D006164 2.7e-48 198.4 149 65.1
Dinv00168 Davidia involucrata HOM05D004403 ORTHO05D006164 3.6e-48 198.0 149 65.1
Dinv02140 Davidia involucrata HOM05D004403 ORTHO05D006164 2.3e-47 195.3 147 64.6
Duzib068G0276 Durio zibethinus HOM05D004403 ORTHO05D006164 2.4e-44 185.3 170 55.9
HPP92_003527 Vanilla planifolia HOM05D004403 ORTHO05D006164 3.6e-40 171.4 166 54.8
Os04g0252200 Oryza sativa ssp. japonica HOM05D004403 ORTHO05D006164 4.5e-35 154.5 118 63.6
CARHR264330 Cardamine hirsuta HOM05D004403 ORTHO05D006164 2.2e-34 152.1 120 70.0
Cre13.g573450 Chlamydomonas reinhardtii HOM05D004403 ORTHO05D006164 2.2e-34 152.1 541 28.3
SEGI_37725 Sequoiadendron giganteum HOM05D004403 ORTHO05D037533 1.4e-28 132.9 102 66.7
Atru.chr1.4080 Acer truncatum HOM05D004403 ORTHO05D019398 4.1e-28 131.3 70 87.1
RcHm_v2.0_Chr7g0227531 Rosa chinensis HOM05D004403 ORTHO05D031317 2.8e-24 118.6 70 81.4
COL.COLO4_14185 Corchorus olitorius HOM05D004403 ORTHO05D006164 4.1e-20 104.8 76 67.1
Dinv28531 Davidia involucrata HOM05D004403 ORTHO05D006164 1.2e-19 103.2 76 67.1
HanXRQChr02g0041381 Helianthus annuus HOM05D004403 ORTHO05D006164 4.6e-19 101.3 69 66.7
SEGI_01534 Sequoiadendron giganteum HOM05D004403 ORTHO05D037589 7.8e-19 100.5 125 49.6
SEGI_35082 Sequoiadendron giganteum HOM05D004403 ORTHO05D037589 7.8e-19 100.5 125 49.6
ClCG09G013390 Citrullus lanatus HOM05D004403 ORTHO05D006164 2.9e-18 98.6 83 61.4
TPR.G11029 Trifolium pratense HOM05D004403 ORTHO05D006164 1.6e-16 92.8 77 63.6
ClCG09G013370 Citrullus lanatus HOM05D004403 ORTHO05D019398 6.8e-15 87.4 42 92.9
CDE04G0245 Ceratophyllum demersum HOM05D002993 ORTHO05D003432 1.5e-14 86.3 77 58.4
CDE12G0426 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 4.4e-14 84.7 75 57.3
SEGI_12165 Sequoiadendron giganteum HOM05D004403 ORTHO05D006164 5.8e-14 84.3 77 53.2
AL8G19390 Arabidopsis lyrata HOM05D018953 ORTHO05D031317 7.5e-14 84.0 52 75.0
Lsat_1_v5_gn_4_141020 Lactuca sativa HOM05D004403 ORTHO05D048380 3.7e-13 81.6 59 57.6
Glyma.17G179000 Glycine max HOM05D004403 ORTHO05D006164 4.9e-13 81.3 53 62.3
HanXRQChr12g0366371 Helianthus annuus HOM05D004403 ORTHO05D019398 2.7e-11 75.5 47 68.1
TPR.G35938 Trifolium pratense HOM05D004403 ORTHO05D006164 1.0e-10 73.6 55 61.8
arahy.Tifrunner.gnm1.ann1.Y8CXQ2 Arachis hypogaea HOM05D004403 ORTHO05D006164 2.1e-08 65.9 44 77.3
arahy.Tifrunner.gnm1.ann1.5J7MDZ Arachis hypogaea HOM05D004403 ORTHO05D016646 1.4e-07 63.2 39 74.4
CARHR264440 Cardamine hirsuta HOM05D004403 ORTHO05D006164 2.0e-06 59.3 42 73.8
Lsat_1_v5_gn_5_118921 Lactuca sativa HOM05D004403 ORTHO05D006164 2.6e-06 58.9 39 74.4
SEGI_20486 Sequoiadendron giganteum HOM05D004403 ORTHO05D006164 3.4e-06 58.5 43 62.8


User provided reference genes

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