Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 2.7e-258 894.8 444 100.0
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 1.4e-214 749.6 467 83.9
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 2.1e-199 699.1 491 77.2
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 1.5e-197 693.0 490 76.7
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 3.4e-197 691.8 490 76.5
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 1.0e-196 690.3 490 76.7
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 2.9e-180 635.6 465 73.8
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 7.9e-178 627.5 492 68.7
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 2.3e-177 625.9 494 69.0
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 7.4e-176 620.9 506 67.2
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 1.2e-173 613.6 494 68.2
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 3.5e-173 612.1 480 69.0
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 3.5e-173 612.1 476 70.2
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 7.7e-173 610.9 494 68.6
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 2.2e-172 609.4 491 68.0
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 3.8e-172 608.6 488 66.6
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 3.2e-171 605.5 493 67.3
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 5.5e-171 604.7 483 67.7
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 7.2e-171 604.4 489 66.1
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 9.4e-171 604.0 478 68.4
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.2e-170 603.6 484 68.0
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 3.6e-170 602.1 488 66.4
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 4.7e-170 601.7 463 70.6
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 6.1e-170 601.3 474 67.5
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 6.1e-170 601.3 474 67.5
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 8.0e-170 600.9 474 67.5
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 1.0e-169 600.5 490 67.8
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 6.7e-169 597.8 492 67.5
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 1.5e-168 596.7 489 66.5
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.0e-168 596.3 491 65.8
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 7.4e-168 594.3 485 67.2
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 7.4e-168 594.3 473 68.1
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 9.7e-168 594.0 481 67.4
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 9.7e-168 594.0 415 74.7
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 1.3e-167 593.6 482 66.8
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 1.7e-167 593.2 489 65.2
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 2.2e-167 592.8 489 66.3
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 2.8e-167 592.4 482 66.8
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 2.8e-167 592.4 490 65.7
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 1.1e-166 590.5 491 65.2
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 1.4e-166 590.1 481 66.9
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 1.4e-166 590.1 481 66.5
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 1.8e-166 589.7 480 66.9
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 4.1e-166 588.6 490 65.1
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 7.0e-166 587.8 512 63.3
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 7.0e-166 587.8 481 66.3
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 9.1e-166 587.4 490 65.1
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 9.1e-166 587.4 490 64.9
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 1.2e-165 587.0 490 64.9
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.6e-165 586.6 490 65.1
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 2.0e-165 586.3 481 66.5
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 2.6e-165 585.9 511 63.0
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 4.5e-165 585.1 499 66.5
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 5.9e-165 584.7 490 65.7
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.3e-164 583.6 490 64.7
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 1.7e-164 583.2 453 69.3
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.2e-164 582.8 490 64.7
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 3.8e-164 582.0 489 65.0
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 5.0e-164 581.6 491 65.2
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 6.5e-164 581.3 481 66.1
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 6.5e-164 581.3 483 65.6
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 8.5e-164 580.9 411 73.7
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 1.5e-163 580.1 508 63.2
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 1.9e-163 579.7 453 68.4
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 7.2e-163 577.8 411 73.2
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 9.4e-163 577.4 476 67.4
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 1.2e-162 577.0 421 71.7
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 1.6e-162 576.6 481 65.1
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 1.6e-162 576.6 453 68.2
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 2.7e-162 575.9 465 67.1
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 3.6e-162 575.5 485 65.4
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 3.6e-162 575.5 463 67.0
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 4.7e-162 575.1 452 67.9
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 1.0e-161 573.9 488 63.3
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.4e-161 573.5 423 71.9
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 1.4e-161 573.5 452 68.1
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 1.4e-161 573.5 436 71.1
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 4.0e-161 572.0 465 66.9
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 4.0e-161 572.0 525 62.5
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 8.8e-161 570.9 492 64.8
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.5e-160 570.1 448 67.6
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 9.7e-160 567.4 457 66.7
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 1.7e-159 566.6 447 67.6
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 2.2e-159 566.2 479 64.1
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 2.8e-159 565.8 472 66.7
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 3.7e-159 565.5 479 64.3
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 4.8e-159 565.1 479 64.3
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 6.3e-159 564.7 479 64.7
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 6.3e-159 564.7 479 64.7
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 2.4e-158 562.8 448 67.4
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 3.1e-158 562.4 479 63.9
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 3.1e-158 562.4 479 63.5
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 4.1e-158 562.0 448 65.6
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 7.0e-158 561.2 480 63.5
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 1.2e-157 560.5 479 63.5
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 2.0e-157 559.7 479 64.3
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 2.0e-157 559.7 479 64.3
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 3.5e-157 558.9 462 65.2
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 5.9e-157 558.1 481 63.2
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 5.9e-157 558.1 481 63.2
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 5.0e-156 555.1 487 62.6
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 1.9e-155 553.1 430 69.1
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 2.5e-155 552.7 434 68.9
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 2.5e-155 552.7 434 68.9
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 4.7e-154 548.5 423 67.8
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 5.4e-150 535.0 490 59.6
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 2.7e-149 532.7 537 57.5
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 6.6e-148 528.1 480 61.2
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 2.1e-146 523.1 452 61.9
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 6.1e-146 521.5 422 66.6
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.2e-144 517.3 477 58.9
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 3.3e-139 499.2 413 63.2
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 3.6e-138 495.7 590 52.7
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 1.4e-137 493.8 421 62.0
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 1.4e-137 493.8 413 63.2
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 1.6e-133 480.3 469 58.8
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 2.7e-133 479.6 496 55.0
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 3.5e-133 479.2 481 57.6
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 4.6e-133 478.8 382 66.8
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 6.0e-133 478.4 490 57.6
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 2.2e-119 433.3 344 66.3
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 6.4e-119 431.8 294 76.2
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 3.1e-113 412.9 429 51.0
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.3e-106 391.0 260 74.6
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 7.8e-101 371.7 430 47.4
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 1.5e-99 367.5 380 53.2
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 3.1e-97 359.8 387 50.9
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.1e-82 310.5 252 68.3
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 1.3e-79 301.2 489 39.5
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 2.5e-75 287.0 172 84.3
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.6e-69 267.7 460 38.7
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 4.3e-67 259.6 218 62.8
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.8e-57 227.6 204 60.3
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 6.7e-52 209.1 400 34.5
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 2.5e-46 190.7 120 73.3
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 3.4e-43 180.3 379 33.8
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 6.6e-31 139.4 83 77.1
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 1.9e-30 137.9 340 33.2
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 5.7e-27 126.3 75 86.7
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 9.8e-27 125.6 117 59.0
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 1.2e-19 102.1 65 83.1
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 5.6e-14 83.2 58 74.1
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 9.8e-11 72.4 46 71.7
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 2.2e-10 71.2 69 53.6
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 2.9e-10 70.9 72 52.8
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 4.1e-09 67.0 52 69.2


User provided reference genes

Program Settings