Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 6.7e-159 563.9 278 100.0
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.7e-141 505.0 278 91.0
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.1e-140 503.4 278 91.7
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 3.1e-140 501.9 278 89.9
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 3.1e-140 501.9 278 89.9
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 4.5e-139 498.0 278 90.3
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 2.9e-138 495.4 278 87.1
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.0e-114 417.2 279 73.8
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.5e-113 412.5 279 73.1
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 1.1e-108 397.1 281 71.2
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 7.8e-107 391.0 285 67.4
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 1.2e-104 383.6 279 67.0
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.7e-101 373.2 281 65.5
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 8.4e-101 370.9 281 66.9
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.1e-100 370.5 281 65.8
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.4e-100 370.2 280 65.4
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.9e-100 369.8 278 65.5
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.9e-100 369.8 289 66.8
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.6e-99 366.7 280 64.6
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 7.8e-99 364.4 281 63.7
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 2.3e-98 362.8 307 61.6
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 5.6e-97 358.2 279 64.9
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 7.3e-97 357.8 281 66.2
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 7.3e-97 357.8 279 65.6
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.3e-96 357.1 281 64.4
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.6e-96 356.7 279 64.9
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.6e-96 356.7 281 64.1
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 2.8e-96 355.9 292 62.7
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 4.8e-96 355.1 281 63.7
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.1e-95 354.0 281 63.7
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 1.1e-95 354.0 281 64.4
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.4e-95 353.6 278 61.9
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.8e-95 353.2 279 63.8
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.4e-95 352.8 279 62.7
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 3.1e-95 352.4 279 62.0
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 5.3e-95 351.7 279 63.1
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.9e-95 351.3 283 63.6
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.5e-94 350.1 278 61.9
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.5e-94 350.1 278 62.2
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 2.0e-94 349.7 278 62.6
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 2.0e-94 349.7 281 64.1
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 4.5e-94 348.6 280 62.9
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 4.5e-94 348.6 278 61.2
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.3e-93 347.1 254 68.5
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 2.2e-93 346.3 275 64.0
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 2.2e-93 346.3 275 64.0
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.2e-93 346.3 281 63.0
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.9e-93 345.9 280 63.2
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 3.8e-93 345.5 278 61.5
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 8.4e-93 344.4 306 57.5
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.1e-92 344.0 279 61.3
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.4e-92 343.6 278 61.2
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 2.4e-92 342.8 281 59.4
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 5.4e-92 341.7 278 60.8
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 1.2e-91 340.5 278 61.2
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.6e-91 340.1 290 59.0
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.6e-91 340.1 280 62.1
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 2.7e-91 339.3 277 61.4
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 3.5e-91 339.0 278 61.2
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 6.0e-91 338.2 275 62.5
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 7.9e-91 337.8 232 72.4
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.9e-91 337.8 278 61.9
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 3.9e-90 335.5 282 60.6
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 2.5e-89 332.8 278 61.2
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 5.6e-89 331.6 234 67.1
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 7.4e-89 331.3 280 61.1
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 7.4e-89 331.3 280 61.1
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 7.4e-89 331.3 283 61.1
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.3e-88 330.5 280 62.9
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.3e-88 330.5 307 56.4
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 2.1e-88 329.7 234 66.7
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.8e-88 329.3 280 60.7
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 2.8e-88 329.3 278 60.1
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 6.2e-88 328.2 280 59.3
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 1.1e-87 327.4 280 57.1
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-87 327.0 232 71.1
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 6.9e-87 324.7 229 69.0
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 9.0e-87 324.3 278 56.8
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.5e-86 323.6 227 69.6
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 4.5e-86 322.0 280 60.4
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 4.9e-85 318.5 281 59.1
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 8.4e-85 317.8 266 62.8
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 5.5e-84 315.1 262 63.0
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 5.5e-84 315.1 297 52.9
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.0e-82 310.8 298 52.7
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 3.0e-82 309.3 291 53.3
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.5e-81 306.2 227 64.3
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.5e-81 306.2 227 64.3
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 7.6e-78 294.7 275 52.7
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.8e-77 292.4 278 52.9
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 6.5e-77 291.6 279 50.5
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.9e-76 290.0 230 64.3
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.7e-75 286.2 298 49.3
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 2.7e-75 286.2 298 49.3
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 3.5e-75 285.8 292 50.0
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.3e-74 283.9 243 60.5
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 1.8e-74 283.5 275 50.9
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.8e-74 283.5 293 49.1
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 3.9e-74 282.3 280 55.4
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 6.7e-74 281.6 277 54.9
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.9e-73 280.0 280 52.9
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.5e-73 279.6 300 46.0
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 9.7e-73 277.7 343 47.5
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.6e-72 276.9 275 49.8
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.2e-70 270.8 192 68.8
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.5e-70 270.4 281 50.2
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 4.5e-70 268.9 278 51.4
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 2.2e-69 266.5 202 67.3
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 2.9e-69 266.2 295 47.5
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 5.0e-69 265.4 278 51.4
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 5.0e-69 265.4 295 47.1
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 5.0e-69 265.4 295 47.1
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.1e-68 264.2 278 48.6
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.5e-68 263.1 164 77.4
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 2.7e-67 259.6 226 54.0
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 2.0e-65 253.4 162 72.8
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.4e-65 251.5 195 63.6
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 4.1e-63 245.7 276 50.7
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 3.4e-62 242.7 279 44.8
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.9e-60 236.9 145 77.2
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-59 234.2 280 49.3
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.2e-59 234.2 232 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 2.7e-59 233.0 255 45.9
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.6e-59 232.6 268 47.8
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 4.7e-59 232.3 226 55.8
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.1e-59 231.9 277 45.5
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 7.9e-59 231.5 283 46.3
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.4e-58 230.7 164 68.9
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.5e-57 227.3 164 67.1
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 3.1e-55 219.5 279 46.6
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.0e-54 216.9 279 42.3
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.7e-53 213.8 278 45.7
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 3.6e-51 206.1 276 46.0
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 4.4e-49 199.1 144 64.6
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.5e-44 183.3 198 46.0
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 9.8e-33 144.8 279 35.8
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 7.2e-28 128.6 221 40.3
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 9.8e-25 118.2 117 55.6
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 1.4e-23 114.4 121 45.5
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.6e-19 100.9 99 52.5
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 8.0e-11 72.0 180 30.6
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 3.1e-10 70.1 281 29.2
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.8e-10 68.9 78 51.3
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 3.7e-08 63.2 68 45.6
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-07 61.2 73 52.1


User provided reference genes

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