Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000044g0560 Nicotiana tabacum HOM05D006432 ORTHO05D008257 6.3e-160 567.4 288 100.0
Nitab4.5_0000596g0040 Nicotiana tabacum HOM05D006432 ORTHO05D008257 1.0e-149 533.5 288 94.8
Solyc09g090330.3 Solanum lycopersicum HOM05D006432 ORTHO05D008257 1.3e-128 463.4 289 84.8
Sopen09g033230 Solanum pennellii HOM05D006432 ORTHO05D008257 3.2e-127 458.8 307 80.1
PGSC0003DMG400017164 Solanum tuberosum HOM05D006432 ORTHO05D008257 4.3e-124 448.4 289 83.0
CAN.G220.38 Capsicum annuum HOM05D006432 ORTHO05D008257 2.4e-119 432.6 294 79.9
Peaxi162Scf00392g00732 Petunia axillaris HOM05D006432 ORTHO05D008257 4.6e-110 401.7 303 72.3
Actinidia39914 Actinidia chinensis HOM05D006432 ORTHO05D008257 7.1e-103 377.9 295 70.5
Migut.N00285 Erythranthe guttata HOM05D006432 ORTHO05D008257 8.7e-101 370.9 286 68.9
Thecc.04G259000 Theobroma cacao HOM05D006432 ORTHO05D008257 1.1e-100 370.5 282 70.2
Cfa014742 Carpinus fangiana HOM05D006432 ORTHO05D008257 3.3e-100 369.0 291 69.1
GSVIVG01027851001 Vitis vinifera HOM05D006432 ORTHO05D008257 7.4e-100 367.9 242 76.9
MSTRG.9882 Avicennia marina HOM05D006432 ORTHO05D008257 1.3e-99 367.1 300 68.3
Potri.008G169100 Populus trichocarpa HOM05D006432 ORTHO05D008257 2.1e-99 366.3 247 76.1
Haze_11417 Corylus avellana HOM05D006432 ORTHO05D008257 2.8e-99 365.9 244 77.0
Dinv27072 Davidia involucrata HOM05D006432 ORTHO05D008257 8.1e-99 364.4 304 68.1
Sabra08G0128900 Salix brachista HOM05D006432 ORTHO05D008257 1.8e-98 363.2 247 74.9
TWI73G0471 Tripterygium wilfordii HOM05D006432 ORTHO05D008257 4.0e-98 362.1 242 75.6
Atru.chr4.2005 Acer truncatum HOM05D006432 ORTHO05D008257 1.5e-97 360.1 305 65.6
Cc03_g05780 Coffea canephora HOM05D006432 ORTHO05D008257 4.5e-97 358.6 302 65.6
Manes.15G043100 Manihot esculenta HOM05D006432 ORTHO05D008257 4.5e-97 358.6 295 66.4
COL.COLO4_15916 Corchorus olitorius HOM05D006432 ORTHO05D008257 1.3e-96 357.1 294 68.0
Hma1.2p1_0385F.1_g141240 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 1.7e-96 356.7 290 69.0
Ca_09849_v3 Cicer arietinum L. HOM05D006432 ORTHO05D008257 2.9e-96 355.9 282 68.8
Actinidia11356 Actinidia chinensis HOM05D006432 ORTHO05D008257 3.8e-96 355.5 291 66.3
QL06p019206 Quercus lobata HOM05D006432 ORTHO05D008257 3.8e-96 355.5 291 68.4
PGR031G2997 Punica granatum HOM05D006432 ORTHO05D008257 4.2e-95 352.1 289 66.1
CsaV3_3G011940 Cucumis sativus L. HOM05D006432 ORTHO05D008257 9.3e-95 350.9 219 80.4
ClCG05G004210 Citrullus lanatus HOM05D006432 ORTHO05D008257 2.1e-94 349.7 219 79.5
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 6.0e-94 348.2 215 80.9
Sc13g0005860 Simmondsia chinensis HOM05D006432 ORTHO05D008257 7.9e-94 347.8 245 72.7
CSS0006599 Camellia sinensis var. sinensis HOM05D006432 ORTHO05D008257 1.0e-93 347.4 286 67.1
Ah.13g072590 Amaranthus hybridus HOM05D006432 ORTHO05D008257 3.0e-93 345.9 223 79.4
MELO3C006407.2 Cucumis melo HOM05D006432 ORTHO05D008257 3.0e-93 345.9 219 80.4
Rhsim02G0041500 Rhododendron simsii HOM05D006432 ORTHO05D008257 3.0e-93 345.9 197 85.3
Oeu059409.1 Olea europaea HOM05D006432 ORTHO05D008257 3.9e-93 345.5 281 65.5
Hund11907 Selenicereus undatus HOM05D006432 ORTHO05D008257 3.9e-93 345.5 292 65.8
MBI07_g31085_MAGBIO Magnolia biondii HOM05D006432 ORTHO05D008257 5.1e-93 345.1 246 71.1
CiPaw.01G181700 Carya illinoinensis HOM05D006432 ORTHO05D008257 6.7e-93 344.7 293 65.5
Glyma.20G207100 Glycine max HOM05D006432 ORTHO05D008257 1.1e-92 344.0 269 69.9
Ciclev10007095m.g Citrus clementina HOM05D006432 ORTHO05D008257 1.5e-92 343.6 300 63.3
Prupe.1G042200 Prunus persica HOM05D006432 ORTHO05D008257 1.9e-92 343.2 297 64.3
Eucgr.H00144 Eucalyptus grandis HOM05D006432 ORTHO05D008257 2.5e-92 342.8 245 72.2
MD16G1221800 Malus domestica HOM05D006432 ORTHO05D008257 3.3e-92 342.4 296 65.2
Zm00001eb114860 Zea mays HOM05D006432 ORTHO05D008257 7.4e-92 341.3 220 79.5
TPR.G10084 Trifolium pratense HOM05D006432 ORTHO05D008257 9.6e-92 340.9 293 65.5
Gohir.D09G229900 Gossypium hirsutum HOM05D006432 ORTHO05D008257 1.6e-91 340.1 254 68.1
vmacro15458 Vaccinium macrocarpon HOM05D006432 ORTHO05D008257 6.2e-91 338.2 296 64.2
Gohir.A09G228800 Gossypium hirsutum HOM05D006432 ORTHO05D008257 8.1e-91 337.8 254 67.7
Gorai.006G252600 Gossypium raimondii HOM05D006432 ORTHO05D008257 8.1e-91 337.8 254 67.7
Lsat_1_v5_gn_2_40021 Lactuca sativa HOM05D006432 ORTHO05D008257 1.4e-90 337.0 300 62.7
Os11g0595200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 1.4e-90 337.0 220 77.3
VMungo0720G1276 Vigna mungo HOM05D006432 ORTHO05D008257 3.1e-90 335.9 290 65.9
Psat6g122560 Pisum sativum HOM05D006432 ORTHO05D008257 4.0e-90 335.5 282 67.0
FAN17G1327 Fragaria x ananassa HOM05D006432 ORTHO05D008257 6.9e-90 334.7 298 62.1
FAN22G0893 Fragaria x ananassa HOM05D006432 ORTHO05D008257 9.0e-90 334.3 298 61.7
HanXRQChr14g0434951 Helianthus annuus HOM05D006432 ORTHO05D008257 1.5e-89 333.6 288 62.5
CDE04G3487 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 2.0e-89 333.2 291 61.9
AUR62002163 Chenopodium quinoa HOM05D006432 ORTHO05D008257 4.5e-89 332.0 194 83.0
FAN12G0128 Fragaria x ananassa HOM05D006432 ORTHO05D008257 4.5e-89 332.0 298 61.4
Duzib052G0458 Durio zibethinus HOM05D006432 ORTHO05D008257 5.8e-89 331.6 199 82.4
Medtr1g075660 Medicago truncatula HOM05D006432 ORTHO05D008257 5.8e-89 331.6 289 64.0
Aqoxy5G00185 Aquilegia oxysepala HOM05D006432 ORTHO05D008257 7.6e-89 331.3 299 62.2
AUR62015546 Chenopodium quinoa HOM05D006432 ORTHO05D008257 2.9e-88 329.3 193 82.9
ECA240G3223 Erigeron canadensis HOM05D002023 ORTHO05D002049 4.9e-88 328.6 241 71.0
ATR0582G319 Amborella trichopoda HOM05D006432 ORTHO05D008257 6.5e-88 328.2 197 83.8
Lj5g0003574 Lotus japonicus HOM05D006432 ORTHO05D008257 1.1e-87 327.4 301 63.1
Lalb_Chr21g0312161 Lupinus albus HOM05D006432 ORTHO05D008257 1.1e-87 327.4 292 63.4
THA.LOC104804760 Tarenaya hassleriana HOM05D006432 ORTHO05D008257 1.9e-87 326.6 239 67.4
EL10Ac3g04982 Beta vulgaris HOM05D006432 ORTHO05D008257 5.5e-87 325.1 215 76.3
Lalb_Chr06g0169201 Lupinus albus HOM05D006432 ORTHO05D008257 7.1e-87 324.7 280 64.6
RcHm_v2.0_Chr4g0394281 Rosa chinensis HOM05D006432 ORTHO05D008257 7.1e-87 324.7 295 60.7
Aa31LG8G9890 Aethionema arabicum HOM05D006432 ORTHO05D008257 1.2e-86 323.9 241 67.2
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 1.2e-86 323.9 241 67.2
PSO478G2331 Papaver somniferum HOM05D006432 ORTHO05D008257 4.6e-86 322.0 285 61.4
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 6.0e-86 321.6 241 66.0
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 1.0e-85 320.9 241 66.4
CANSAT78G0744 Cannabis sativa HOM05D006432 ORTHO05D008257 1.8e-85 320.1 219 75.8
PSO017G5682 Papaver somniferum HOM05D006432 ORTHO05D008257 2.3e-85 319.7 284 60.9
Lj3A686T58 Lonicera japonica HOM05D006432 ORTHO05D008257 5.1e-85 318.5 205 77.1
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 6.7e-85 318.2 295 58.6
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 8.7e-85 317.8 291 59.1
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 8.7e-85 317.8 291 59.5
Nn3g19719 Nelumbo nucifera HOM05D006432 ORTHO05D008257 1.1e-84 317.4 301 62.8
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 3.3e-84 315.8 291 59.1
CARHR099370 Cardamine hirsuta HOM05D006432 ORTHO05D008257 4.3e-84 315.5 279 60.2
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 2.1e-83 313.2 247 65.2
AL3G38060 Arabidopsis lyrata HOM05D006432 ORTHO05D008257 2.4e-82 309.7 290 57.6
AT3G23400 Arabidopsis thaliana HOM05D006432 ORTHO05D008257 3.4e-81 305.8 291 57.7
Hma1.2p1_0385F.1_g141230 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 1.7e-80 303.5 262 66.0
MD13G1216500 Malus domestica HOM05D006432 ORTHO05D008257 8.7e-77 291.2 297 57.6
Glyma.10G182900 Glycine max HOM05D006432 ORTHO05D008257 2.5e-76 289.7 168 83.9
HPP92_005402 Vanilla planifolia HOM05D006432 ORTHO05D008257 6.3e-75 285.0 235 64.7
unitig_0.g1188 Utricularia gibba HOM05D006432 ORTHO05D008257 7.2e-71 271.6 204 70.1
SEGI_38471 Sequoiadendron giganteum HOM05D006432 ORTHO05D008257 4.5e-65 252.3 219 58.9
Pp3c11_17240 Physcomitrium patens HOM05D006432 ORTHO05D008257 1.7e-64 250.4 223 55.6
Oeu055241.1 Olea europaea HOM05D000508 ORTHO05D000371 6.5e-64 248.4 235 59.1
Nn1g02871 Nelumbo nucifera HOM05D006432 ORTHO05D008257 5.5e-63 245.4 251 57.8
SMO141G0176 Selaginella moellendorffii HOM05D006432 ORTHO05D008257 2.0e-60 236.9 267 49.4
BcaB05g22938 Brassica carinata HOM05D006432 ORTHO05D008257 6.3e-59 231.9 207 60.4
AagrBONN_evm.TU.Sc2ySwM_228.2035 Anthoceros agrestis HOM05D006432 ORTHO05D008257 1.1e-58 231.1 204 53.9
Dinv29840 Davidia involucrata HOM05D006432 ORTHO05D008257 5.0e-56 222.2 218 61.0
arahy.Tifrunner.gnm1.ann1.X8C4EZ Arachis hypogaea HOM05D006432 ORTHO05D008257 8.8e-53 211.5 114 87.7
arahy.Tifrunner.gnm1.ann1.508QQU Arachis hypogaea HOM05D006432 ORTHO05D008257 1.2e-52 211.1 114 86.8
SGA_v2.0_scaffold43G16214 Striga asiatica HOM05D006432 ORTHO05D008257 2.8e-51 206.5 302 44.0
Cpa.g.sc44.36 Carica papaya HOM05D006432 ORTHO05D008257 1.4e-50 204.1 110 86.4
Mapoly0012s0134 Marchantia polymorpha HOM05D006432 ORTHO05D008257 1.3e-48 197.6 192 52.6
CDE03G0089 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 2.0e-41 173.7 114 73.7
SGA_v2.0_scaffold370G50119 Striga asiatica HOM05D006432 ORTHO05D008257 2.0e-41 173.7 105 76.2
CBR_g30839 Chara braunii HOM05D006432 ORTHO05D008257 6.5e-40 168.7 213 42.3
Cpa.g.sc44.33 Carica papaya HOM05D006432 ORTHO05D008257 9.8e-36 154.8 183 55.2
FvH4_4g04000 Fragaria vesca HOM05D003789 ORTHO05D004158 1.3e-32 144.4 198 48.5
Phvul.010G070111 Phaseolus vulgaris HOM05D006432 ORTHO05D008257 1.6e-30 137.5 106 70.8
BcaB04g17238 Brassica carinata HOM05D006432 ORTHO05D008257 1.8e-29 134.0 81 74.1
BcaB02g08931 Brassica carinata HOM05D006432 ORTHO05D008257 2.3e-29 133.7 102 62.7
Cre02.g143667 Chlamydomonas reinhardtii HOM05D006432 ORTHO05D008257 1.5e-28 131.0 265 34.7
Nn1g02875 Nelumbo nucifera HOM05D006432 ORTHO05D008257 1.7e-27 127.5 85 81.2
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 1.1e-26 124.8 78 71.8
MCO05G338 Micromonas commoda HOM05D006432 ORTHO05D008257 1.4e-21 107.8 202 37.1
BcaB07g33946 Brassica carinata HOM05D006432 ORTHO05D008257 4.9e-19 99.4 62 69.4
Os05g0304200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 5.0e-16 89.4 73 64.4
Sabra10G0037800 Salix brachista HOM05D006432 ORTHO05D008257 2.4e-10 70.5 41 75.6
PRCOL_00002195 Prasinoderma coloniale HOM05D006432 ORTHO05D008257 2.1e-09 67.4 162 35.2
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 1.3e-08 64.7 221 28.5
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 1.7e-08 64.3 194 27.3
CAN.G345.5 Capsicum annuum HOM05D006432 ORTHO05D008257 2.3e-08 63.9 44 75.0
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 3.9e-08 63.2 190 28.9
Thhalv10014407m.g Eutrema salsugineum HOM05D005663 ORTHO05D007258 1.5e-07 61.2 241 24.1
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 1.5e-07 61.2 189 28.0
BraA03t09772Z Brassica rapa HOM05D005663 ORTHO05D007258 1.9e-07 60.8 201 26.9
Carub.0006s0824 Capsella rubella HOM05D005663 ORTHO05D007258 1.9e-07 60.8 194 26.8
Sp6g33590 Schrenkiella parvula HOM05D005663 ORTHO05D007258 1.9e-07 60.8 204 26.5
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 2.5e-07 60.5 194 26.8
AL6G20230 Arabidopsis lyrata HOM05D005663 ORTHO05D007258 3.3e-07 60.1 194 26.8
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 3.3e-07 60.1 191 27.7
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 4.3e-07 59.7 188 28.7
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 5.6e-07 59.3 274 26.6
Psat7g048760 Pisum sativum HOM05D005663 ORTHO05D007258 5.6e-07 59.3 201 27.9
THA.LOC104818465 Tarenaya hassleriana HOM05D005663 ORTHO05D007258 5.6e-07 59.3 191 25.1
A03p04280 Brassica napus HOM05D005663 ORTHO05D007258 9.5e-07 58.5 204 26.5
MCO03G426 Micromonas commoda HOM05D003483 ORTHO05D004101 9.5e-07 58.5 191 31.4
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 9.5e-07 58.5 194 28.9
RcHm_v2.0_Chr2g0119121 Rosa chinensis HOM05D005663 ORTHO05D007258 9.5e-07 58.5 189 27.0
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 1.2e-06 58.2 189 27.5
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 1.2e-06 58.2 274 26.3
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 1.2e-06 58.2 199 29.1
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 1.6e-06 57.8 189 29.6
Cre03.g197650 Chlamydomonas reinhardtii HOM05D006432 ORTHO05D044141 1.6e-06 57.8 209 26.8
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 1.6e-06 57.8 191 27.2
Aa31LG3G17290 Aethionema arabicum HOM05D005663 ORTHO05D007258 2.1e-06 57.4 194 25.3
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 2.1e-06 57.4 191 27.2
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 2.1e-06 57.4 234 26.9
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 2.8e-06 57.0 189 27.5
FvH4_1g23570 Fragaria vesca HOM05D005663 ORTHO05D007258 2.8e-06 57.0 189 27.0
PGSC0003DMG400003986 Solanum tuberosum HOM05D005663 ORTHO05D007258 2.8e-06 57.0 185 27.6
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 3.6e-06 56.6 189 27.5
FAN26G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 3.6e-06 56.6 189 27.0
Sopen11g001350 Solanum pennellii HOM05D005663 ORTHO05D007258 3.6e-06 56.6 191 27.2
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 4.7e-06 56.2 183 27.3
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 6.2e-06 55.8 198 26.8
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 8.1e-06 55.5 188 28.7
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 8.1e-06 55.5 189 28.6


User provided reference genes

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