Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1819.7 926 100.0
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1756.5 924 97.0
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 0.0e+00 1560.4 927 86.0
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 0.0e+00 1555.0 927 85.4
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 0.0e+00 1545.8 925 85.7
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 0.0e+00 1538.9 926 84.7
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 0.0e+00 1530.4 926 84.8
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1284.2 929 69.6
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1253.8 928 68.2
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1252.3 933 66.8
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1245.3 932 67.8
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1243.4 930 68.4
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1241.9 930 68.3
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1238.8 936 67.7
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1238.4 938 67.3
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1224.9 949 64.8
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 0.0e+00 1212.2 912 67.1
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1159.8 938 62.6
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 0.0e+00 1158.7 933 63.5
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 0.0e+00 1150.2 940 62.2
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1147.9 936 62.5
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1146.3 936 62.4
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1145.2 936 62.3
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1144.8 940 61.8
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 0.0e+00 1142.5 940 61.7
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1138.6 938 61.5
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1128.6 937 61.7
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1127.5 931 60.8
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1124.8 938 61.5
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1112.4 935 60.6
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 0.0e+00 1110.5 934 61.3
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1107.8 952 59.7
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1102.4 947 60.2
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1101.7 936 59.5
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1100.9 948 59.8
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1100.1 935 60.2
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1097.0 946 59.6
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1096.3 948 59.0
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1095.9 943 59.4
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1094.0 934 59.5
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1091.6 945 60.1
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 0.0e+00 1091.3 930 59.2
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 0.0e+00 1090.9 978 58.8
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1089.7 934 59.3
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1085.1 934 60.0
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1084.3 942 59.4
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1081.6 944 58.5
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1080.9 928 57.7
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 6.3e-312 1073.5 934 58.8
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 2.0e-308 1062.4 940 58.7
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 5.9e-308 1060.8 937 58.0
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 2.9e-307 1058.5 945 56.9
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 3.8e-307 1058.1 929 58.0
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 6.5e-307 1057.4 959 57.1
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 1.2e-305 1053.1 947 57.2
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 1.6e-305 1052.7 940 57.3
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 2.1e-305 1052.4 934 58.4
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 7.9e-305 1050.4 935 58.4
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 6.7e-304 1047.3 938 57.8
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 7.4e-303 1043.9 939 57.0
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 1.7e-302 1042.7 928 59.8
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 6.3e-302 1040.8 914 59.0
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 9.1e-301 1036.9 937 57.0
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 2.0e-300 1035.8 937 57.0
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 7.7e-300 1033.9 922 58.2
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 6.5e-299 1030.8 849 62.1
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 1.1e-298 1030.0 937 57.0
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 3.2e-298 1028.5 932 56.9
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 7.2e-298 1027.3 934 56.9
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 2.1e-297 1025.8 940 56.9
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 7.9e-297 1023.8 932 56.5
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 7.9e-297 1023.8 932 56.5
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 3.0e-296 1021.9 939 56.7
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 3.0e-296 1021.9 936 56.4
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 3.9e-296 1021.5 992 54.1
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.4e-293 1013.1 946 56.1
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 2.0e-292 1009.2 934 55.6
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 2.7e-289 998.8 902 58.2
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 1.2e-281 973.4 919 55.9
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 2.6e-279 965.7 935 55.3
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 5.7e-279 964.5 818 60.6
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 4.5e-276 954.9 755 63.6
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 1.7e-275 953.0 935 54.7
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.5e-271 939.9 947 53.5
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 1.0e-259 900.6 687 67.1
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 2.5e-258 896.0 809 56.0
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.2e-254 882.9 689 65.2
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 5.2e-248 861.7 854 52.5
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 7.0e-245 851.3 742 59.6
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 3.3e-242 842.4 817 54.0
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 2.0e-231 806.6 941 45.9
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 1.1e-221 774.2 939 46.4
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 1.8e-211 740.3 658 58.5
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 1.7e-190 670.6 969 41.9
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 5.1e-179 632.5 948 39.7
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 1.5e-175 620.9 872 41.4
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 1.7e-161 574.3 486 57.8
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.6e-140 504.6 432 60.0
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 1.0e-139 501.9 882 35.1
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 1.3e-137 495.0 465 56.1
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 1.9e-133 481.1 742 40.0
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.2e-130 471.9 389 62.0
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 1.5e-130 471.5 415 56.1
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 1.4e-128 464.9 454 55.1
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 2.7e-127 460.7 886 34.2
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 1.7e-126 458.0 868 32.4
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.0e-107 393.7 428 51.4
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.1e-83 313.9 264 61.4
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.2e-66 259.2 186 62.4
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 8.5e-41 173.3 334 36.8
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 2.1e-39 168.7 464 29.7
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 8.0e-39 166.8 144 59.7
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 2.0e-37 162.2 129 62.0
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.9e-33 148.3 348 32.2
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 9.5e-32 143.3 140 54.3
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 1.0e-30 139.8 131 58.8
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 5.0e-25 120.9 123 55.3
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 3.3e-24 118.2 175 44.6
MCO15G701 Micromonas commoda HOM05D004953 ORTHO05D006193 2.8e-23 115.2 912 21.9
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.1e-22 111.7 120 51.7
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.2e-21 109.8 118 50.0
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 2.6e-21 108.6 112 53.6
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.9e-19 102.4 73 68.5
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 2.4e-19 102.1 66 72.7
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 7.0e-19 100.5 73 67.1
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 7.0e-19 100.5 73 67.1
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 3.5e-18 98.2 73 64.4
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 4.6e-18 97.8 73 65.8
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 7.3e-16 90.5 124 42.7
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.1e-15 89.0 61 67.2
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.4e-14 86.3 61 67.2
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.4e-13 81.3 58 72.4
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 9.8e-13 80.1 58 72.4
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 3.2e-11 75.1 46 73.9
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 2.7e-10 72.0 55 60.0
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.6e-10 71.2 55 60.0
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 1.0e-09 70.1 60 51.7
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.7e-09 69.3 55 58.2
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 3.0e-09 68.6 323 23.2
Pp3c19_1150 Physcomitrium patens HOM05D004953 ORTHO05D006193 5.6e-08 64.3 88 40.9
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.1e-07 62.4 61 59.0
ATR0580G291 Amborella trichopoda HOM05D004953 ORTHO05D006193 1.1e-06 60.1 67 46.3


User provided reference genes

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