Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000023g0330 Nicotiana tabacum HOM05D002484 ORTHO05D002541 5.8e-64 247.3 115 100.0
Solyc01g011435.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 2.5e-22 109.0 99 50.5
CAN.G559.4 Capsicum annuum HOM05D002484 ORTHO05D002541 1.2e-21 106.7 97 55.7
Nitab4.5_0000023g0340 Nicotiana tabacum HOM05D002484 ORTHO05D002541 1.6e-21 106.3 99 53.5
Solyc01g011495.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 1.3e-20 103.2 97 52.6
Nitab4.5_0000023g0290 Nicotiana tabacum HOM05D002484 ORTHO05D002541 3.0e-20 102.1 97 55.7
Nitab4.5_0005600g0020 Nicotiana tabacum HOM05D002484 ORTHO05D002541 1.2e-16 90.1 75 54.7
Peaxi162Scf00324g00715 Petunia axillaris HOM05D002484 ORTHO05D002541 3.6e-13 78.6 95 44.2
Peaxi162Scf00324g00722 Petunia axillaris HOM05D002484 ORTHO05D002541 4.6e-13 78.2 95 44.2
Peaxi162Scf00324g00716 Petunia axillaris HOM05D002484 ORTHO05D002541 2.3e-12 75.9 97 45.4
TWI56G0984 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 2.5e-11 72.4 56 57.1
COL.COLO4_25964 Corchorus olitorius HOM05D002484 ORTHO05D002541 3.3e-11 72.0 95 44.2
CAN.G1126.34 Capsicum annuum HOM05D002484 ORTHO05D002541 7.4e-11 70.9 84 42.9
C06p46130 Brassica napus HOM05D002484 ORTHO05D002541 6.3e-10 67.8 100 36.0
HanXRQChr16g0506041 Helianthus annuus HOM05D002484 ORTHO05D002541 8.2e-10 67.4 99 38.4
BolC6t39666H Brassica oleracea HOM05D002484 ORTHO05D002541 1.1e-09 67.0 95 40.0
COL.COLO4_25963 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.8e-09 66.2 55 56.4
AT2G26010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 2.4e-09 65.9 55 54.5
BraA07t31386Z Brassica rapa HOM05D002484 ORTHO05D002541 2.4e-09 65.9 95 38.9
DCAR_028974 Daucus carota HOM05D002484 ORTHO05D002541 2.4e-09 65.9 45 57.8
PGR031G2841 Punica granatum HOM05D002484 ORTHO05D002541 4.1e-09 65.1 54 55.6
Thhalv10000662m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 6.9e-09 64.3 53 56.6
Atru.chr5.3052 Acer truncatum HOM05D002484 ORTHO05D002541 9.1e-09 63.9 95 40.0
Carub.0007s0108 Capsella rubella HOM05D002484 ORTHO05D002541 9.1e-09 63.9 61 47.5
DCAR_001564 Daucus carota HOM05D002484 ORTHO05D002541 9.1e-09 63.9 53 47.2
BcaC08g46653 Brassica carinata HOM05D002484 ORTHO05D002541 1.2e-08 63.5 54 53.7
DCAR_028972 Daucus carota HOM05D002484 ORTHO05D002541 1.2e-08 63.5 95 38.9
Sed0028225 Sechium edule HOM05D002484 ORTHO05D002541 1.2e-08 63.5 50 58.0
Actinidia27667 Actinidia chinensis HOM05D002484 ORTHO05D002541 1.5e-08 63.2 94 35.1
Aqoxy4G00457 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 1.5e-08 63.2 82 43.9
AL2G35830 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.5e-08 63.2 46 58.7
AT2G26020 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.5e-08 63.2 53 54.7
AT5G44420 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.5e-08 63.2 53 54.7
AT5G44430 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.5e-08 63.2 53 54.7
CARHR069280 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.5e-08 63.2 54 53.7
ECA236G3870 Erigeron canadensis HOM05D002484 ORTHO05D002541 1.5e-08 63.2 47 57.4
CARHR069310 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.0e-08 62.8 53 54.7
CARHR284300 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.0e-08 62.8 53 54.7
Thhalv10019394m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.0e-08 62.8 53 54.7
CARHR216420 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.6e-08 62.4 46 56.5
Thhalv10019395m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.6e-08 62.4 54 51.9
HanXRQChr16g0505521 Helianthus annuus HOM05D002484 ORTHO05D002541 2.6e-08 62.4 95 40.0
TPR.G11190 Trifolium pratense HOM05D002484 ORTHO05D002541 4.5e-08 61.6 53 54.7
HanXRQChr16g0505831 Helianthus annuus HOM05D002484 ORTHO05D002541 5.9e-08 61.2 46 56.5
COL.COLO4_25966 Corchorus olitorius HOM05D002484 ORTHO05D002541 7.7e-08 60.8 51 51.0
Migut.N00483 Erythranthe guttata HOM05D002484 ORTHO05D002541 7.7e-08 60.8 46 56.5
HanXRQChr16g0505511 Helianthus annuus HOM05D002484 ORTHO05D002541 7.7e-08 60.8 95 38.9
Medtr8g012835 Medicago truncatula HOM05D002484 ORTHO05D002541 7.7e-08 60.8 46 56.5
Thecc.02G082200 Theobroma cacao HOM05D002484 ORTHO05D002541 7.7e-08 60.8 84 38.1
Atru.chr5.3054 Acer truncatum HOM05D002484 ORTHO05D002541 1.0e-07 60.5 56 51.8
Solyc07g009260.3 Solanum lycopersicum HOM05D002484 ORTHO05D002541 1.0e-07 60.5 84 39.3
TWI79G0221 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 1.0e-07 60.5 97 37.1
AT1G75830 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.3e-07 60.1 97 41.2
Carub.0007s3201 Capsella rubella HOM05D002484 ORTHO05D002541 1.3e-07 60.1 89 38.2
ECA236G2297 Erigeron canadensis HOM05D002484 ORTHO05D002541 1.3e-07 60.1 46 52.2
Prupe.1G376000 Prunus persica HOM05D002484 ORTHO05D002541 1.3e-07 60.1 61 45.9
A07p41370 Brassica napus HOM05D002484 ORTHO05D002541 1.7e-07 59.7 54 51.9
BraA07t31670Z Brassica rapa HOM05D002484 ORTHO05D002541 1.7e-07 59.7 54 51.9
CARHR247530 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.7e-07 59.7 63 46.0
ECA236G2706 Erigeron canadensis HOM05D002484 ORTHO05D002541 1.7e-07 59.7 95 37.9
MD08G1027500 Malus domestica HOM05D002484 ORTHO05D002541 1.7e-07 59.7 45 53.3
BcaB05g24952 Brassica carinata HOM05D002484 ORTHO05D002541 2.2e-07 59.3 54 50.0
A02p20270 Brassica napus HOM05D002484 ORTHO05D002541 2.2e-07 59.3 54 50.0
BraA02t07061Z Brassica rapa HOM05D002484 ORTHO05D002541 2.2e-07 59.3 54 50.0
Thhalv10019396m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.2e-07 59.3 54 50.0
HanXRQChr03g0074221 Helianthus annuus HOM05D002484 ORTHO05D002541 2.2e-07 59.3 88 38.6
HanXRQChr03g0074231 Helianthus annuus HOM05D002484 ORTHO05D002541 2.2e-07 59.3 88 38.6
HanXRQChr03g0074241 Helianthus annuus HOM05D002484 ORTHO05D002541 2.2e-07 59.3 88 38.6
Medtr8g012775 Medicago truncatula HOM05D002484 ORTHO05D002541 2.2e-07 59.3 51 52.9
PSO302G0221 Papaver somniferum HOM05D018786 ORTHO05D002541 2.2e-07 59.3 46 52.2
BcaB03g14925 Brassica carinata HOM05D002484 ORTHO05D002541 2.9e-07 58.9 51 51.0
Lsat_1_v5_gn_5_65860 Lactuca sativa HOM05D002484 ORTHO05D002541 2.9e-07 58.9 97 37.1
Aqoxy5G01512 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 3.8e-07 58.5 83 39.8
AL7G45400 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 3.8e-07 58.5 50 52.0
BcaB02g07045 Brassica carinata HOM05D002484 ORTHO05D002541 3.8e-07 58.5 90 37.8
BcaC08g45552 Brassica carinata HOM05D002484 ORTHO05D002541 3.8e-07 58.5 46 50.0
C06p32340 Brassica napus HOM05D002484 ORTHO05D002541 3.8e-07 58.5 46 50.0
FAN20G0586 Fragaria x ananassa HOM05D002484 ORTHO05D002541 3.8e-07 58.5 55 49.1
TWI75G1456 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 3.8e-07 58.5 89 40.4
BcaC03g15629 Brassica carinata HOM05D002484 ORTHO05D002541 5.0e-07 58.2 91 38.5
A07p41360 Brassica napus HOM05D002484 ORTHO05D002541 5.0e-07 58.2 45 53.3
C02p33630 Brassica napus HOM05D002484 ORTHO05D002541 5.0e-07 58.2 91 38.5
BolC2t09341H Brassica oleracea HOM05D002484 ORTHO05D002541 5.0e-07 58.2 91 38.5
BraA07t31669Z Brassica rapa HOM05D002484 ORTHO05D002541 5.0e-07 58.2 45 53.3
Carub.0002s2268 Capsella rubella HOM05D002484 ORTHO05D002541 5.0e-07 58.2 54 50.0
Carub.0002s2269 Capsella rubella HOM05D002484 ORTHO05D002541 5.0e-07 58.2 54 50.0
Carub.0002s2270 Capsella rubella HOM05D002484 ORTHO05D002541 5.0e-07 58.2 54 50.0
Psat4g203640 Pisum sativum HOM05D002484 ORTHO05D002541 5.0e-07 58.2 96 37.5
Aqoxy5G01140 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 6.5e-07 57.8 66 36.4
Carub.0002s2274 Capsella rubella HOM05D002484 ORTHO05D002541 6.5e-07 57.8 54 48.1
CARHR069270 Cardamine hirsuta HOM05D002484 ORTHO05D002541 6.5e-07 57.8 54 50.0
FvH4_2g11470 Fragaria vesca HOM05D002484 ORTHO05D002541 6.5e-07 57.8 51 51.0
FAN20G2159 Fragaria x ananassa HOM05D002484 ORTHO05D002541 6.5e-07 57.8 51 51.0
RcHm_v2.0_Chr6g0301471 Rosa chinensis HOM05D002484 ORTHO05D002541 6.5e-07 57.8 54 46.3
Sp5g30970 Schrenkiella parvula HOM05D002484 ORTHO05D002541 6.5e-07 57.8 89 37.1
Carub.0002s2271 Capsella rubella HOM05D002484 ORTHO05D002541 8.5e-07 57.4 46 52.2
TPR.G17112 Trifolium pratense HOM05D002484 ORTHO05D002541 8.5e-07 57.4 52 51.9
BcaC08g47074 Brassica carinata HOM05D002484 ORTHO05D002541 1.1e-06 57.0 45 53.3
Ciclev10029711m.g Citrus clementina HOM05D002484 ORTHO05D002541 1.1e-06 57.0 95 35.8
FAN20G1957 Fragaria x ananassa HOM05D002484 ORTHO05D002541 1.1e-06 57.0 54 46.3
C02p33860 Brassica napus HOM05D002484 ORTHO05D002541 1.4e-06 56.6 48 54.2
AL7G11150 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.9e-06 56.2 95 34.7
Lsat_1_v5_gn_7_90580 Lactuca sativa HOM05D002484 ORTHO05D002541 1.9e-06 56.2 45 53.3
Lsat_1_v5_gn_7_90700 Lactuca sativa HOM05D002484 ORTHO05D002541 1.9e-06 56.2 45 53.3
Medtr8g012870 Medicago truncatula HOM05D002484 ORTHO05D002541 1.9e-06 56.2 44 54.5
PGR031G0268 Punica granatum HOM05D002484 ORTHO05D002541 1.9e-06 56.2 54 50.0
CAN.G715.4 Capsicum annuum HOM05D010303 ORTHO05D011265 2.5e-06 55.8 96 32.3
Medtr8g012795 Medicago truncatula HOM05D002484 ORTHO05D002541 2.5e-06 55.8 51 47.1
HanXRQChr04g0128041 Helianthus annuus HOM05D002484 ORTHO05D002541 3.2e-06 55.5 57 47.4
Aa31LG7G4230 Aethionema arabicum HOM05D002484 ORTHO05D002541 4.2e-06 55.1 55 47.3
Nn3g20428 Nelumbo nucifera HOM05D002484 ORTHO05D002541 4.2e-06 55.1 90 37.8
AL1G32330 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 5.5e-06 54.7 87 41.4
arahy.Tifrunner.gnm1.ann1.81M2S6 Arachis hypogaea HOM05D002484 ORTHO05D002541 5.5e-06 54.7 53 47.2
Carub.0007s0110 Capsella rubella HOM05D002484 ORTHO05D002541 5.5e-06 54.7 55 43.6
Psat4g203560 Pisum sativum HOM05D002484 ORTHO05D002541 7.2e-06 54.3 53 50.9
A05p26930 Brassica napus HOM05D002484 ORTHO05D002541 9.4e-06 53.9 50 52.0
C01p00390 Brassica napus HOM05D002484 ORTHO05D002541 9.4e-06 53.9 50 52.0
BolC2t09321H Brassica oleracea HOM05D002484 ORTHO05D002541 9.4e-06 53.9 48 52.1
BraA05t21573Z Brassica rapa HOM05D002484 ORTHO05D002541 9.4e-06 53.9 50 52.0
CARHR069290 Cardamine hirsuta HOM05D002484 ORTHO05D002541 9.4e-06 53.9 53 49.1
Nitab4.5_0000023g0300 Nicotiana tabacum HOM05D002484 ORTHO05D283593 9.4e-06 53.9 34 64.7


User provided reference genes

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