Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 1.2e-170 603.2 333 100.0
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 9.6e-152 540.4 318 95.6
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 5.5e-131 471.5 332 80.7
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 2.3e-129 466.1 333 79.9
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 2.2e-124 449.5 332 78.3
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 4.6e-114 415.2 332 75.0
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 3.1e-110 402.5 331 72.8
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 6.1e-74 282.0 343 54.5
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 5.9e-69 265.4 352 52.0
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 1.2e-66 257.7 360 50.8
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 2.8e-66 256.5 340 50.6
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 3.6e-66 256.1 329 51.4
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 8.0e-66 255.0 346 50.9
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 8.9e-65 251.5 357 47.6
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 1.5e-64 250.8 338 50.6
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 3.4e-64 249.6 351 49.3
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 1.3e-63 247.7 354 49.2
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 2.9e-63 246.5 375 48.5
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 4.9e-63 245.7 360 49.4
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 3.2e-62 243.0 351 49.0
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 3.2e-62 243.0 306 51.3
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 4.1e-62 242.7 339 51.9
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 9.2e-62 241.5 335 51.3
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 6.0e-61 238.8 334 50.3
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 1.0e-60 238.0 353 47.6
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 1.3e-60 237.7 351 48.4
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 2.3e-60 236.9 306 53.6
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 2.3e-60 236.9 359 47.4
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 3.9e-60 236.1 331 51.4
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 6.6e-60 235.3 343 46.9
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 8.6e-60 235.0 297 54.2
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 1.1e-59 234.6 350 48.9
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 1.9e-59 233.8 333 49.5
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 4.3e-59 232.6 345 49.6
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 4.3e-59 232.6 241 60.6
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 5.6e-59 232.3 303 51.5
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 7.3e-59 231.9 335 50.1
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 7.3e-59 231.9 336 48.5
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 9.5e-59 231.5 331 49.5
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 1.2e-58 231.1 292 53.4
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 4.7e-58 229.2 331 52.0
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 1.8e-57 227.3 350 47.1
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 3.1e-57 226.5 341 46.6
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 1.5e-56 224.2 322 50.0
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 5.8e-56 222.2 296 50.0
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 5.8e-56 222.2 271 54.2
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 9.8e-56 221.5 251 55.4
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 9.8e-56 221.5 345 44.9
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 1.3e-55 221.1 211 62.6
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 1.7e-55 220.7 402 42.8
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.9e-55 219.9 312 49.0
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 8.3e-55 218.4 347 46.7
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 3.2e-54 216.5 304 50.0
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 4.1e-54 216.1 350 45.7
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 4.1e-54 216.1 310 47.4
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 5.4e-54 215.7 337 46.9
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 7.1e-54 215.3 213 59.6
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.6e-53 214.2 337 46.6
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.6e-53 214.2 337 47.2
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 2.7e-53 213.4 338 47.6
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 4.6e-53 212.6 274 52.6
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 1.0e-52 211.5 294 51.7
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 1.3e-52 211.1 313 48.6
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 6.6e-52 208.8 222 54.5
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 4.3e-51 206.1 251 53.8
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 9.5e-51 204.9 205 56.6
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 9.5e-51 204.9 290 47.2
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.2e-50 204.5 267 50.6
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 1.2e-50 204.5 292 49.0
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 1.6e-50 204.1 350 44.9
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 1.6e-50 204.1 307 50.8
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 2.1e-50 203.8 331 45.6
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 1.1e-49 201.4 288 50.0
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 1.4e-49 201.1 336 46.1
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 1.2e-48 198.0 430 38.8
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.0e-48 197.2 339 43.7
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 3.4e-48 196.4 335 45.4
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 1.3e-47 194.5 335 46.3
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 1.7e-47 194.1 348 43.4
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 2.2e-47 193.7 287 47.4
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 2.9e-47 193.4 249 49.4
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 6.4e-47 192.2 287 47.7
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 6.4e-47 192.2 348 42.8
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 8.3e-47 191.8 336 44.0
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 1.1e-46 191.4 207 56.0
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.1e-46 191.4 348 42.5
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 3.2e-46 189.9 360 43.1
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 5.4e-46 189.1 189 60.8
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 1.2e-45 188.0 337 44.2
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 2.1e-45 187.2 340 44.4
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 2.1e-45 187.2 337 44.8
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 7.8e-45 185.3 335 43.0
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.3e-44 183.7 265 46.0
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 8.6e-44 181.8 198 56.6
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 8.6e-44 181.8 308 41.9
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.1e-43 181.4 245 51.4
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 1.9e-43 180.6 369 43.9
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 7.3e-43 178.7 352 42.9
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 1.6e-42 177.6 339 43.1
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 3.6e-42 176.4 352 42.6
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 2.0e-40 170.6 229 50.2
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 4.4e-40 169.5 247 46.2
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 4.4e-40 169.5 356 43.0
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 3.8e-39 166.4 394 39.1
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 1.4e-38 164.5 158 60.8
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 4.2e-38 162.9 339 37.8
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 4.6e-37 159.5 356 42.4
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 3.6e-34 149.8 164 54.9
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 1.4e-33 147.9 205 48.3
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 5.3e-33 146.0 226 45.1
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 5.8e-32 142.5 230 44.8
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 2.4e-30 137.1 217 47.0
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 2.4e-30 137.1 275 41.1
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 3.2e-30 136.7 340 40.0
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.2e-29 134.8 252 40.9
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 1.0e-28 131.7 315 35.9
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 4.3e-27 126.3 310 38.1
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 2.8e-26 123.6 200 45.0
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.5e-24 117.9 193 46.1
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 1.5e-24 117.9 110 53.6
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 4.5e-24 116.3 94 67.0
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 6.0e-21 105.9 295 34.6
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 7.9e-21 105.5 113 49.6
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 8.7e-20 102.1 295 38.6
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 3.0e-12 77.0 68 61.8
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 2.5e-11 73.9 48 70.8
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 1.6e-10 71.2 142 36.6


User provided reference genes

Program Settings