Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.5e-141 505.4 247 100.0
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 5.3e-107 391.3 321 67.9
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 2.6e-106 389.0 321 67.6
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.0e-105 387.1 355 62.5
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.0e-105 387.1 355 62.5
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.0e-105 387.1 355 62.5
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.0e-105 387.1 355 62.5
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.0e-105 387.1 355 62.5
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.0e-105 387.1 355 62.5
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 1.8e-102 376.3 354 61.3
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.9e-102 375.2 321 65.1
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 8.8e-102 374.0 355 61.4
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 4.4e-101 371.7 354 61.3
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 9.7e-101 370.5 355 61.1
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 9.7e-101 370.5 355 61.1
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 9.7e-101 370.5 355 61.1
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.7e-100 369.8 355 60.8
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 2.8e-100 369.0 355 60.3
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 8.2e-100 367.5 328 64.0
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 1.1e-99 367.1 355 60.3
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.1e-99 367.1 352 60.5
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.4e-99 366.7 297 67.0
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 4.1e-99 365.2 324 64.5
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 5.3e-99 364.8 354 59.6
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 2.5e-96 355.9 339 61.7
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 3.2e-96 355.5 355 59.4
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 3.2e-96 355.5 355 59.4
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 3.2e-96 355.5 355 59.4
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 3.2e-96 355.5 355 59.4
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 3.2e-96 355.5 355 59.4
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 3.2e-96 355.5 355 59.4
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 7.2e-96 354.4 351 59.8
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 1.2e-95 353.6 355 59.4
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 1.2e-95 353.6 355 59.4
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.2e-95 353.6 355 59.2
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.1e-95 352.8 351 59.3
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 2.7e-95 352.4 355 59.2
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 6.1e-95 351.3 356 59.3
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 1.8e-94 349.7 355 58.9
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 2.3e-94 349.4 348 59.5
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 5.2e-94 348.2 352 58.0
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.7e-89 333.2 330 60.3
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.7e-89 333.2 283 64.7
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 8.5e-89 330.9 301 63.5
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.5e-88 328.2 294 64.3
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 4.7e-87 325.1 330 59.7
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.2e-85 320.5 336 56.8
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 1.5e-85 320.1 321 58.9
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.8e-85 317.4 325 56.6
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-83 313.9 318 57.5
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 1.1e-80 303.9 321 57.9
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 1.6e-79 300.1 354 52.8
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 3.3e-72 275.8 276 58.7
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 4.3e-72 275.4 351 51.0
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 1.6e-66 256.9 231 63.6
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 2.3e-65 253.1 231 62.8
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 5.6e-64 248.4 388 42.5
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.7e-63 245.4 226 61.9
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 6.2e-63 245.0 227 62.1
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.4e-62 243.8 226 61.9
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 4.4e-61 238.8 231 60.6
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 5.8e-61 238.4 254 56.7
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.4e-59 233.8 281 53.0
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 7.1e-59 231.5 175 70.9
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 7.1e-59 231.5 175 70.9
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 7.1e-59 231.5 175 70.9
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 3.9e-57 225.7 227 59.0
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 3.9e-57 225.7 227 59.0
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 1.8e-54 216.9 175 68.0
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 5.2e-54 215.3 175 67.4
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.8e-53 211.8 255 52.2
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 5.1e-49 198.7 168 65.5
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 2.5e-48 196.4 176 65.3
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 2.1e-47 193.4 211 55.9
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.4e-46 190.7 222 52.7
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.4e-46 190.7 222 52.7
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 5.2e-46 188.7 170 61.8
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 2.6e-45 186.4 197 57.4
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 1.5e-40 170.6 130 70.8
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 3.6e-39 166.0 94 87.2
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 1.8e-38 163.7 142 64.8
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 8.4e-36 154.8 98 79.6
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 1.1e-35 154.5 204 49.5
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.1e-34 150.2 150 59.3
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 1.7e-33 147.1 83 88.0
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 3.0e-33 146.4 91 81.3
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 1.6e-31 140.6 98 73.5
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.3e-28 131.0 82 79.3
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 1.9e-27 127.1 89 74.2
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 4.2e-27 125.9 246 38.6
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 4.2e-27 125.9 84 77.4
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.5e-24 117.5 175 45.7
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 1.5e-24 117.5 69 87.0
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 5.6e-24 115.5 103 63.1
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.8e-23 113.2 84 70.2
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-22 111.3 115 56.5
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 5.3e-22 109.0 173 47.4
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.9e-22 108.6 152 50.7
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 2.6e-21 106.7 107 50.5
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 3.4e-21 106.3 115 53.0
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 2.2e-20 103.6 141 43.3
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 2.9e-20 103.2 68 75.0
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 1.4e-19 100.9 354 25.4
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 9.3e-19 98.2 53 86.8
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 2.7e-18 96.7 68 72.1
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 1.8e-17 94.0 52 84.6
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 5.1e-17 92.4 119 52.1
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 5.1e-17 92.4 109 51.4
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 7.4e-16 88.6 53 75.5
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 1.3e-15 87.8 46 84.8
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.6e-15 87.4 133 46.6
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 6.3e-15 85.5 67 71.6
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.1e-14 84.7 219 35.6
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.4e-14 84.3 103 52.4
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.4e-14 84.3 133 45.1
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 2.0e-13 80.5 148 41.2
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 4.5e-13 79.3 54 81.5
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 8.4e-12 75.1 54 75.9
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.5e-11 73.6 127 44.1
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 3.2e-11 73.2 51 78.4
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 3.9e-09 66.2 46 71.7
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 2.5e-08 63.5 37 73.0
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 4.3e-08 62.8 33 84.8
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.3e-08 62.8 42 64.3
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 1.6e-07 60.8 106 42.5
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-06 58.2 57 59.6
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 5.3e-06 55.8 53 64.2
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 6.9e-06 55.5 35 77.1


User provided reference genes

Program Settings