Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 2084.7 999 100.0
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1713.7 1036 79.3
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1710.3 1036 79.4
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1706.8 1036 80.0
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1658.7 1012 78.9
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1425.6 1034 64.8
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1387.5 1039 64.1
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1363.2 1035 61.9
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1361.7 1039 62.4
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1355.5 1034 61.8
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1348.2 1052 61.4
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1346.3 1033 61.7
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1339.7 1034 60.9
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1335.1 1034 60.6
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1330.5 1034 60.8
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1328.2 1034 60.4
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1327.0 1048 61.0
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1325.5 1033 59.9
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1323.5 1034 60.0
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1317.0 1035 59.6
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1315.4 1034 59.3
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1314.7 1016 60.9
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1310.8 1034 59.8
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1310.0 1035 59.9
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1309.7 1035 59.7
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1307.4 1034 59.6
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1305.8 1034 59.2
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1304.3 1036 59.4
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1300.8 1036 59.3
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1300.4 1034 59.4
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1299.6 1034 59.1
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1295.0 1032 59.9
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1294.3 1034 58.8
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1289.6 1033 59.1
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1283.5 1035 58.1
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1281.5 1034 58.7
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1281.2 1045 58.7
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1276.2 1034 57.9
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1276.2 1119 55.5
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1275.0 1036 57.8
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1275.0 1026 59.7
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1272.7 1033 58.6
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1272.7 1045 58.7
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1272.3 1038 58.8
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1264.2 1035 57.7
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1264.2 1047 58.3
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1261.1 1017 59.0
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1259.2 1038 57.8
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1258.8 1046 58.0
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1258.4 1036 58.3
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1256.5 1034 57.9
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1253.4 1034 57.8
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1251.9 1034 57.8
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1251.9 1041 56.7
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1246.5 1034 57.3
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1244.2 1034 57.2
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1243.4 1034 57.2
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1243.4 1042 56.7
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1243.4 1039 57.1
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1242.6 1039 57.1
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1242.6 1039 57.1
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1240.7 1034 57.8
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1239.9 1034 57.1
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1239.9 1034 57.1
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1238.4 1031 57.6
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1238.0 1034 57.0
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1235.7 1041 56.5
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1233.4 1026 57.0
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1232.2 1040 56.8
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1232.2 1039 56.6
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1231.9 1030 56.8
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1229.2 1034 56.6
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1229.2 1028 56.9
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1228.0 1035 57.6
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1227.6 1034 56.6
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1226.8 1027 56.9
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1226.1 1027 57.1
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1225.7 1034 56.4
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1223.0 1041 55.9
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1219.1 1051 56.5
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1215.7 1032 57.3
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1200.3 1037 55.8
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1196.8 1038 54.6
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1185.2 1042 55.1
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1179.5 913 60.4
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1164.4 1060 52.9
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1159.4 1009 55.4
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1135.6 1066 54.4
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 4.7e-303 1044.6 829 59.6
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.3e-297 1026.5 829 58.6
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 2.1e-295 1019.2 748 63.4
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 2.3e-289 999.2 820 58.8
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 1.0e-286 990.3 1039 47.8
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 3.1e-286 988.8 1075 46.2
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 7.5e-285 984.2 535 88.8
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.7e-276 956.4 738 60.3
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 1.4e-275 953.4 760 60.1
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 9.5e-272 940.6 1054 45.4
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 4.6e-250 868.6 1053 43.9
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 4.9e-244 848.6 668 59.9
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 7.1e-235 818.1 1053 42.9
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 2.1e-218 763.5 591 61.8
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 2.4e-206 723.4 516 66.9
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.4e-169 601.3 644 49.5
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 6.8e-161 572.4 457 61.7
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 6.8e-161 572.4 457 61.7
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.3e-148 531.6 270 93.7
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 2.0e-112 411.4 607 39.7
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 1.2e-104 385.6 744 34.3
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 2.6e-96 357.8 283 59.4
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 9.1e-89 332.8 193 74.6
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 7.5e-83 313.2 522 35.6
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 2.0e-75 288.5 249 53.0
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 9.8e-75 286.2 174 75.9
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.1e-70 272.7 206 60.2
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 2.3e-68 265.0 207 60.4
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.1e-61 241.9 210 51.9
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 2.2e-58 231.9 425 33.4
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 3.4e-51 208.0 164 59.1
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.9e-46 192.2 208 49.0
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 3.5e-40 171.4 75 97.3
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.4e-33 149.4 136 47.8
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 6.0e-32 144.1 82 74.4
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 9.6e-30 136.7 137 51.8
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 6.2e-29 134.0 84 67.9
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 1.7e-26 125.9 134 45.5
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 4.2e-25 121.3 70 72.9
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 3.5e-24 118.2 114 53.5
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 1.7e-23 115.9 96 56.2
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 4.3e-22 111.3 174 38.5
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 5.6e-22 110.9 53 86.8
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 5.6e-22 110.9 153 42.5
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 5.6e-22 110.9 65 67.7
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 2.9e-18 98.6 50 74.0
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 7.1e-17 94.0 123 42.3
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 7.1e-17 94.0 86 50.0
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 9.3e-17 93.6 133 42.1
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 2.1e-16 92.4 113 44.2
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 6.0e-16 90.9 46 76.1
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 6.0e-16 90.9 46 76.1
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 2.3e-15 89.0 54 66.7
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 6.7e-15 87.4 45 75.6
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 6.7e-15 87.4 46 73.9
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 8.7e-15 87.0 51 66.7
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 9.6e-14 83.6 45 71.1
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 4.2e-09 68.2 39 66.7
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 1.9e-06 59.3 30 83.3
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 9.6e-06 57.0 61 42.6


User provided reference genes

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