Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.6e-132 476.1 234 100.0
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.0e-129 463.8 234 97.9
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.2e-119 433.3 235 93.2
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.9e-118 427.9 239 91.2
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 9.2e-109 397.1 234 85.0
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 9.2e-109 397.1 234 85.0
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 2.4e-93 345.9 200 85.5
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 2.3e-75 286.2 159 88.7
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 1.3e-73 280.4 157 88.5
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.0e-62 244.2 208 61.5
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 3.2e-61 239.2 218 57.8
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.5e-61 238.4 205 61.5
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.2e-60 237.3 206 60.7
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.2e-60 237.3 213 60.1
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.0e-60 235.0 172 68.0
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 2.3e-59 233.0 175 63.4
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 6.7e-59 231.5 182 63.7
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.5e-58 230.3 183 64.5
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 6.9e-56 221.5 179 63.1
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 4.5e-55 218.8 170 61.8
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 1.0e-54 217.6 179 62.0
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.7e-54 216.9 195 58.5
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.7e-54 216.9 186 60.2
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 1.1e-53 214.2 221 52.9
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 2.5e-53 213.0 171 62.6
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 7.2e-53 211.5 221 53.4
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 1.2e-52 210.7 162 64.8
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.2e-52 210.7 169 62.7
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 6.1e-52 208.4 172 62.2
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 7.9e-52 208.0 151 66.2
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 1.3e-51 207.2 154 65.6
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 1.8e-51 206.8 234 50.0
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.5e-50 203.8 180 57.8
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.5e-50 203.8 156 62.8
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 3.3e-50 202.6 225 48.4
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 9.7e-50 201.1 180 57.8
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 9.7e-50 201.1 180 57.8
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 1.3e-49 200.7 152 65.8
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 1.3e-49 200.7 261 45.6
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 2.2e-49 199.9 156 62.2
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 2.8e-49 199.5 155 63.2
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 3.7e-49 199.1 209 50.7
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 4.8e-49 198.7 183 57.9
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 1.1e-48 197.6 162 64.2
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 1.1e-48 197.6 198 52.5
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 1.1e-48 197.6 169 58.0
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 1.8e-48 196.8 163 62.6
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 1.8e-48 196.8 192 55.7
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 1.8e-48 196.8 147 66.7
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 3.1e-48 196.1 159 62.9
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 6.9e-48 194.9 158 65.2
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 1.5e-47 193.7 156 60.3
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.5e-47 193.7 160 59.4
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 2.6e-47 193.0 161 62.1
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 4.5e-47 192.2 171 62.6
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 1.0e-46 191.0 183 51.9
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.8e-46 189.1 169 57.4
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 3.8e-46 189.1 146 63.0
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 5.0e-46 188.7 178 56.2
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 5.0e-46 188.7 154 60.4
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 5.0e-46 188.7 172 61.6
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 1.4e-45 187.2 158 60.8
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 2.5e-45 186.4 179 56.4
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 3.2e-45 186.0 126 71.4
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 4.2e-45 185.7 183 55.7
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 4.2e-45 185.7 157 63.1
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 1.2e-44 184.1 126 70.6
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 2.1e-44 183.3 151 57.6
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 4.6e-44 182.2 185 51.4
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 6.1e-44 181.8 173 57.8
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.1e-44 181.8 159 58.5
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.1e-44 181.8 159 58.5
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 1.0e-43 181.0 173 57.8
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 1.0e-43 181.0 173 57.2
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.0e-43 181.0 158 58.2
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 3.9e-43 179.1 159 60.4
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.5e-42 177.2 156 57.7
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 3.3e-42 176.0 180 52.2
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 4.4e-42 175.6 158 56.3
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 5.7e-42 175.3 158 56.3
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 5.7e-42 175.3 158 56.3
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 5.7e-42 175.3 158 56.3
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 7.4e-42 174.9 156 57.1
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 1.7e-41 173.7 158 55.7
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 1.7e-41 173.7 158 55.7
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 2.2e-41 173.3 157 56.7
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 2.2e-41 173.3 158 55.7
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.2e-41 173.3 158 57.6
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.4e-40 170.6 156 55.8
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 3.1e-40 169.5 159 56.6
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 6.9e-40 168.3 156 57.1
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.2e-39 167.5 162 56.8
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 3.4e-39 166.0 156 56.4
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 3.4e-39 166.0 160 59.4
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 7.7e-39 164.9 121 65.3
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 1.0e-38 164.5 190 48.4
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.0e-38 164.5 169 52.7
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 1.0e-38 164.5 237 43.5
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.0e-35 154.5 169 49.7
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 1.5e-34 150.6 110 68.2
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 5.7e-34 148.7 161 49.1
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 5.7e-34 148.7 161 49.1
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 4.8e-33 145.6 152 51.3
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 1.1e-32 144.4 161 48.4
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.8e-32 143.7 174 47.7
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.8e-32 143.7 123 61.8
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 9.1e-32 141.4 128 57.8
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 4.5e-31 139.0 89 77.5
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 2.5e-29 133.3 121 56.2
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 3.3e-26 122.9 99 62.6
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 4.4e-26 122.5 102 57.8
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 2.8e-25 119.8 104 57.7
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 4.1e-24 115.9 122 54.9
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 9.1e-24 114.8 91 59.3
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 2.7e-23 113.2 77 63.6
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 2.7e-23 113.2 93 61.3
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 2.2e-22 110.2 162 43.8
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 2.7e-15 86.7 107 45.8
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 2.9e-14 83.2 105 44.8
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 8.6e-14 81.6 68 54.4
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 5.2e-11 72.4 120 35.8
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 3.4e-10 69.7 119 35.3
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 2.8e-09 66.6 46 60.9
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 3.7e-09 66.2 63 50.8
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 8.3e-09 65.1 65 47.7
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 8.3e-09 65.1 74 44.6
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 1.1e-08 64.7 63 49.2
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 4.1e-08 62.8 98 38.8
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.6e-07 60.8 121 37.2
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 1.3e-06 57.8 123 35.8
Gohir.A05G326932 Gossypium hirsutum HOM05D000964 ORTHO05D003870 1.3e-06 57.8 120 32.5
Medtr3g108030 Medicago truncatula HOM05D000964 ORTHO05D003870 1.3e-06 57.8 120 32.5
VMungo0783G0001 Vigna mungo HOM05D000964 ORTHO05D003870 1.3e-06 57.8 131 32.1
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 1.7e-06 57.4 131 32.1
HanXRQChr06g0180681 Helianthus annuus HOM05D000964 ORTHO05D003870 1.7e-06 57.4 120 31.7
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 1.7e-06 57.4 142 29.6
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 1.7e-06 57.4 142 29.6
ATR0306G003 Amborella trichopoda HOM05D000964 ORTHO05D003870 2.3e-06 57.0 120 33.3
EL10Ac4g07916 Beta vulgaris HOM05D000964 ORTHO05D003870 2.3e-06 57.0 120 34.2
CAN.G1595.3 Capsicum annuum HOM05D000964 ORTHO05D003870 2.3e-06 57.0 120 31.7
DCAR_032518 Daucus carota HOM05D000964 ORTHO05D003870 2.3e-06 57.0 120 31.7
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 2.3e-06 57.0 143 30.8
PSO832G3634 Papaver somniferum HOM05D000964 ORTHO05D003870 2.3e-06 57.0 122 33.6
Solyc00g500030.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 2.3e-06 57.0 120 31.7
Solyc00g500075.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 2.3e-06 57.0 120 31.7
MELO3C001187.2 Cucumis melo HOM05D000964 ORTHO05D003870 2.9e-06 56.6 120 33.3
AL2G20570 Arabidopsis lyrata HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
ATCG00750 Arabidopsis thaliana HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
BcaNung05008 Brassica carinata HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
BNapus_Darmor_BZH_scaffold_253p00340 Brassica napus HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
BolSC29t60527H Brassica oleracea HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
BolSC29t60608H Brassica oleracea HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
BolSC35t60668H Brassica oleracea HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
BolSC35t60731H Brassica oleracea HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
BraSC138t45555Z Brassica rapa HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
BraSC59t46572Z Brassica rapa HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
FvH4_c3g00200 Fragaria vesca HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 32.5
Gohir.1Z050234 Gossypium hirsutum HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 32.5
HanXRQChr00c0557g0575741 Helianthus annuus HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
HanXRQChr01g0020231 Helianthus annuus HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
HanXRQChr04g0127501 Helianthus annuus HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
HanXRQChr10g0284371 Helianthus annuus HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
HanXRQChr10g0318071 Helianthus annuus HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
HanXRQChr11g0326951 Helianthus annuus HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
HanXRQCPg0580171 Helianthus annuus HOM05D000964 ORTHO05D003870 3.8e-06 56.2 120 31.7
QL93p1043_0021 Quercus lobata HOM05D000964 ORTHO05D003870 3.8e-06 56.2 119 32.8
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 5.0e-06 55.8 138 31.2
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 5.0e-06 55.8 138 31.2
CAN.G900.14 Capsicum annuum HOM05D006505 ORTHO05D008086 6.6e-06 55.5 35 71.4
PSO548G0016 Papaver somniferum HOM05D000964 ORTHO05D003870 6.6e-06 55.5 120 31.7
Gohir.A05G396500 Gossypium hirsutum HOM05D000964 ORTHO05D003870 8.6e-06 55.1 120 31.7
HanXRQChr02g0052621 Helianthus annuus HOM05D000964 ORTHO05D003870 8.6e-06 55.1 119 30.3
HanXRQChr10g0303901 Helianthus annuus HOM05D000964 ORTHO05D003870 8.6e-06 55.1 119 31.9
LjContig00318g0022290 Lotus japonicus HOM05D000964 ORTHO05D004047 8.6e-06 55.1 129 31.8


User provided reference genes

Program Settings