Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1684.5 862 100.0
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1656.3 862 98.1
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1514.2 891 88.0
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1501.9 891 87.5
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1496.9 876 88.7
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1483.0 816 91.9
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1457.2 862 86.2
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1432.5 1017 75.6
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1431.4 864 84.1
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1411.0 864 83.9
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1388.6 868 82.1
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1354.3 820 84.3
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1300.4 873 76.6
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1292.3 874 77.1
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1287.3 872 76.4
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1281.9 873 76.1
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1277.3 878 75.9
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1265.4 879 75.7
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1259.2 871 75.9
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1251.9 872 75.9
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1251.5 870 74.6
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1248.8 865 74.1
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1246.5 870 74.5
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1245.0 921 71.6
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1237.2 871 74.2
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1233.4 866 74.6
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1233.0 869 74.1
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1232.6 885 72.9
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1230.3 861 75.0
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1225.7 868 73.5
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1225.3 866 74.4
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1225.3 878 73.7
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1221.8 864 73.3
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1221.1 860 74.0
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1220.7 865 73.3
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1219.9 870 73.3
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1217.2 879 71.6
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1216.4 840 74.4
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1216.1 880 71.9
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1215.7 862 72.9
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1215.7 879 72.8
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1214.9 865 72.4
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1213.7 868 75.2
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1213.4 864 74.2
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1211.8 884 72.4
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1211.1 862 72.3
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1210.3 873 73.2
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1208.4 866 72.9
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1203.0 868 73.0
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1200.7 874 72.0
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1199.9 904 69.8
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1199.5 895 70.3
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1196.8 872 72.1
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1194.9 880 70.8
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1193.7 852 73.4
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1192.2 862 72.6
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 905 70.6
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1191.4 863 71.6
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1190.3 890 70.6
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1189.1 883 70.4
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1189.1 865 71.8
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1186.8 900 70.3
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1186.4 911 69.3
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1186.0 904 69.7
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1185.2 926 67.8
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1184.1 853 72.9
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1182.9 890 69.2
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1182.5 902 69.4
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1181.0 889 70.2
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1181.0 862 72.3
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1178.7 902 70.1
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1177.9 905 68.5
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1176.8 860 71.5
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1175.2 913 67.9
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1174.1 919 68.0
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1173.7 710 82.4
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1171.0 909 68.3
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1168.7 862 70.8
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1164.1 913 68.2
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1163.7 900 68.4
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1161.4 875 69.5
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1160.2 968 66.5
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1157.5 907 67.9
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1157.1 880 69.5
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1154.4 916 67.1
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1151.7 909 67.9
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1151.0 918 66.7
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1147.5 870 70.0
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1146.7 895 68.4
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1146.0 895 68.3
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1145.6 880 68.9
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1145.6 895 68.3
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1142.5 918 66.2
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1140.2 907 67.3
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1137.9 871 67.9
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1134.0 818 72.6
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1133.2 940 65.7
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1131.3 890 68.4
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1130.5 866 67.8
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1129.4 862 69.5
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1115.5 910 65.8
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1114.4 912 65.7
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1113.2 831 69.9
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1110.9 894 66.7
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1110.1 854 67.0
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1100.1 834 70.7
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1086.6 860 67.3
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 0.0e+00 1078.2 847 66.6
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1075.8 817 68.4
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 4.6e-307 1057.7 873 66.2
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.9e-305 1052.4 757 71.6
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 3.3e-305 1051.6 869 62.9
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 2.2e-301 1038.9 593 86.2
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 3.0e-290 1001.9 701 75.5
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 7.4e-281 970.7 892 60.7
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 5.3e-279 964.5 709 70.0
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 8.0e-267 924.1 715 69.5
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 3.0e-266 922.2 845 56.4
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 7.5e-265 917.5 872 60.6
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 3.5e-262 908.7 956 55.6
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.9e-260 902.9 897 54.5
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 4.5e-254 881.7 504 83.3
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 5.0e-245 851.7 847 54.4
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 2.7e-238 829.3 690 65.4
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 3.3e-188 662.9 640 58.8
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 7.6e-177 625.2 369 79.4
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.8e-176 622.9 384 76.8
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 9.1e-170 601.7 537 63.7
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.9e-167 594.0 341 80.4
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.5e-167 593.6 352 81.2
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 7.4e-164 582.0 361 75.6
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.5e-156 557.8 464 65.3
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.9e-152 543.5 528 59.8
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 2.3e-141 507.3 697 45.6
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 5.7e-140 502.7 876 38.0
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 2.2e-131 474.2 995 35.7
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 3.4e-124 450.3 305 71.8
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 4.7e-110 403.3 297 68.4
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.1e-109 402.1 500 51.2
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 9.9e-108 395.6 440 56.6
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 2.3e-104 384.4 1022 31.0
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 2.3e-88 331.3 601 39.3
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.4e-76 290.8 346 56.6
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 1.8e-69 268.5 165 77.6
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 1.4e-53 215.7 327 42.8
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 6.3e-46 190.3 147 76.2
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 7.2e-42 176.8 104 79.8
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.7e-35 155.6 107 67.3
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 3.8e-35 154.5 104 75.0
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 6.5e-35 153.7 106 71.7
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 3.5e-20 104.8 78 64.1
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.7e-19 102.4 77 71.4
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 2.6e-15 88.6 61 70.5
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.7e-14 84.7 86 51.2
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 8.3e-14 83.6 75 72.0
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 1.2e-12 79.7 86 50.0
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 7.8e-12 77.0 69 50.7
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.5e-10 72.0 52 73.1
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 4.7e-09 67.8 57 59.6
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.1e-08 65.1 45 68.9
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.2e-07 63.2 52 61.5
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 1.5e-07 62.8 58 60.3
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 2.6e-07 62.0 41 70.7
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 8.3e-06 57.0 46 67.4


User provided reference genes

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