Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 3669.0 1915 100.0
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 3259.9 1882 92.0
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 2930.2 1940 81.4
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 2883.6 1959 78.9
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 2871.3 1919 80.5
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 2864.7 1940 80.1
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 1867.0 1870 55.6
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1861.3 1769 57.4
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1848.6 1857 55.0
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1844.3 1902 55.4
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1817.0 1881 53.5
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1816.6 1932 53.1
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1816.6 1898 53.8
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1816.6 1893 53.7
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1798.9 1853 54.0
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1793.5 1857 53.7
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1792.7 1556 60.0
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1792.7 1853 53.8
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1789.2 1639 58.2
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1786.2 1972 52.2
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1783.8 1868 53.2
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1779.6 1931 52.1
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1776.5 1859 53.4
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1772.7 1550 59.5
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1772.7 1891 52.9
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1772.3 1954 52.7
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1768.8 1880 52.7
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1765.0 1964 51.5
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1750.7 1878 52.9
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1747.3 1959 51.4
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1735.3 1883 52.8
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1723.0 1860 56.0
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1716.4 1907 51.4
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1714.5 1997 49.2
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1711.8 1909 51.4
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1710.3 1901 51.5
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1708.3 1835 52.3
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1706.8 2044 49.1
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1706.8 1868 52.3
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1700.3 1885 51.6
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1699.5 1891 50.9
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1692.9 1934 50.4
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1687.5 1921 50.2
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1671.0 1924 50.2
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1669.8 1896 50.8
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1669.4 1917 50.3
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1668.3 1913 49.7
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1664.0 1892 50.7
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1664.0 1897 51.0
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1662.5 1811 52.0
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1661.0 1928 49.7
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1659.4 1908 50.6
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1657.9 1866 50.8
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1656.3 1952 48.9
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1654.8 1902 49.3
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1652.5 1884 50.5
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1650.6 1883 51.0
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1648.6 1902 49.8
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1644.4 1854 50.9
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1641.7 1879 50.6
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1638.6 1856 51.1
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1636.3 1930 49.6
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1635.2 1904 49.4
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1629.0 1889 50.0
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1612.8 2004 48.3
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1611.7 1844 50.5
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1611.7 1844 50.5
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1596.3 1864 50.1
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1594.3 1999 48.0
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1593.9 1886 48.9
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1591.2 1921 48.6
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1587.8 1328 61.4
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1587.8 1908 48.3
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1587.0 1905 48.7
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1572.4 1771 50.3
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1568.9 1919 47.8
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1567.4 1874 48.6
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1566.2 1888 48.5
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1561.6 1862 48.2
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1561.2 1862 48.2
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1560.0 1911 48.0
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1559.3 1465 56.2
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1558.9 1864 48.1
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1556.6 1915 47.5
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1548.1 1926 47.1
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1545.8 1895 48.0
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1541.9 1905 47.8
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1533.1 1857 48.0
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1531.2 1888 47.3
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1528.1 1979 46.4
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1527.3 1863 48.9
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1526.9 1857 48.0
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1507.3 1876 46.4
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1504.6 1605 51.0
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1503.0 1598 53.9
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1487.2 1928 45.9
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1469.5 2024 44.5
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1431.8 1255 59.2
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1353.2 1472 49.9
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1340.5 1884 43.1
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1162.1 1171 57.6
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1109.7 1174 53.5
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 1.4e-303 1047.3 797 73.4
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 1.9e-292 1010.4 1902 37.4
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 5.7e-273 945.7 968 52.8
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 3.8e-269 932.9 1707 35.2
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 3.2e-268 929.9 1664 36.8
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 2.8e-264 916.8 892 55.0
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 5.5e-260 902.5 2013 33.1
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.3e-248 864.8 1785 33.6
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 1.7e-245 854.4 1057 49.2
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 1.1e-210 738.8 1053 43.6
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 3.4e-201 707.2 948 46.1
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 4.2e-199 700.3 1369 33.6
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 5.3e-194 683.3 1102 40.1
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 8.4e-192 676.0 882 47.7
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.9e-183 648.3 575 59.0
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 6.2e-179 633.3 969 40.5
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 3.1e-178 630.9 1821 28.0
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 3.2e-151 541.2 470 60.9
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 1.7e-147 528.9 548 53.1
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.3e-131 476.1 576 47.2
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.7e-131 474.6 673 42.6
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.1e-122 444.9 566 44.5
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 2.0e-121 442.2 547 45.7
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 4.6e-89 334.7 298 59.1
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 9.3e-82 310.5 458 43.4
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.9e-79 302.8 627 36.7
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 1.8e-61 243.0 221 57.5
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.1e-57 229.6 378 38.9
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.5e-44 186.8 199 49.2
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 2.0e-44 186.4 368 36.7
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.2e-41 177.2 110 82.7
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 2.6e-39 169.5 342 33.9
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.3e-38 167.2 436 33.9
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.7e-38 165.6 217 41.9
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 5.3e-37 161.8 593 30.7
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 4.5e-36 158.7 140 53.6
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-34 153.7 162 51.9
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.0e-32 147.5 580 26.4
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 5.2e-32 145.2 161 50.9
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 3.3e-31 142.5 918 20.8
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 1.3e-30 140.6 162 48.1
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 7.0e-29 134.8 399 29.1
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 1.4e-24 120.6 116 59.5
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.6e-20 107.1 117 47.9
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 3.8e-19 102.4 156 42.3
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 1.1e-18 100.9 102 51.0
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 7.2e-18 98.2 228 32.0
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 5.2e-16 92.0 104 47.1
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 7.5e-15 88.2 54 75.9
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.8e-13 83.6 59 62.7
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 1.7e-11 77.0 370 24.9
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 3.0e-08 66.2 153 33.3
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 6.8e-08 65.1 143 30.1
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.0e-07 63.5 71 47.9
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 5.7e-07 62.0 69 50.7
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 9.8e-07 61.2 180 33.3
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 2.8e-06 59.7 101 36.6


User provided reference genes

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