Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 0.0e+00 1392.1 698 100.0
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 0.0e+00 1176.4 623 95.8
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 0.0e+00 1106.7 623 89.6
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 0.0e+00 1105.1 623 89.2
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 0.0e+00 1105.1 623 89.1
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 0.0e+00 1077.0 623 87.6
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 1.6e-286 989.2 632 80.9
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 3.4e-284 981.5 623 81.2
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 3.7e-262 908.3 639 71.7
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.0e-251 873.6 639 69.0
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 2.7e-249 865.5 647 68.6
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 2.7e-249 865.5 624 70.8
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 2.5e-247 859.0 624 69.2
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.6e-244 849.0 632 68.8
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 8.5e-243 844.0 625 68.0
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 2.1e-241 839.3 632 68.2
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 2.1e-241 839.3 624 67.5
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 4.4e-239 831.6 639 65.4
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 4.1e-237 825.1 630 68.3
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.7e-235 819.7 639 66.7
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 4.7e-233 811.6 633 65.1
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 2.8e-230 802.4 653 62.9
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 5.3e-229 798.1 624 64.1
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 2.6e-228 795.8 628 64.6
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 5.0e-227 791.6 641 63.2
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 6.5e-227 791.2 651 62.8
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 8.5e-227 790.8 642 63.7
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 1.1e-226 790.4 641 63.3
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 4.2e-226 788.5 634 64.2
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 9.4e-226 787.3 635 62.7
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 6.1e-225 784.6 644 62.3
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 4.0e-224 781.9 643 63.6
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 6.8e-224 781.2 632 63.6
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 1.2e-223 780.4 643 63.3
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.5e-223 780.0 643 63.5
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 1.8e-221 773.1 624 63.9
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 9.1e-221 770.8 638 61.8
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 3.5e-220 768.8 640 62.8
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 3.5e-220 768.8 637 61.5
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 4.5e-220 768.5 625 62.9
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 1.0e-219 767.3 641 59.8
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 1.3e-219 766.9 643 61.9
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 3.8e-219 765.4 654 60.4
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 8.5e-219 764.2 638 61.1
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 1.2e-217 760.4 640 61.2
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 4.7e-217 758.4 629 60.1
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 1.8e-216 756.5 640 61.1
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 6.8e-216 754.6 630 61.3
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 2.0e-215 753.1 639 60.9
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 7.5e-215 751.1 631 61.5
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 1.7e-214 750.0 633 61.6
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 4.8e-214 748.4 627 60.4
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 8.3e-214 747.7 627 60.6
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 8.3e-214 747.7 647 59.5
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 5.4e-213 745.0 628 60.4
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 2.0e-212 743.0 641 60.7
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 4.5e-212 741.9 632 61.2
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 4.5e-212 741.9 641 59.3
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 5.9e-212 741.5 631 60.5
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 7.7e-212 741.1 631 61.6
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 6.6e-211 738.0 625 60.0
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 8.6e-211 737.6 638 60.5
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 1.9e-210 736.5 602 63.0
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.9e-210 736.5 630 60.2
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 9.5e-210 734.2 632 59.8
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 9.5e-210 734.2 637 60.9
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 4.7e-209 731.9 632 59.8
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 1.0e-208 730.7 632 59.7
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 1.0e-208 730.7 647 58.9
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 4.0e-208 728.8 649 58.6
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 5.2e-208 728.4 631 59.7
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 5.2e-208 728.4 631 59.7
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 6.8e-208 728.0 646 59.8
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 6.8e-208 728.0 624 59.6
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 2.6e-207 726.1 624 59.9
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 3.4e-207 725.7 646 59.8
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 3.4e-207 725.7 647 58.1
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 4.1e-205 718.8 626 58.8
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 8.6e-203 711.1 593 61.0
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.9e-202 709.9 644 56.5
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 3.6e-201 705.7 653 57.3
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 6.4e-198 694.9 633 57.8
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 2.0e-196 689.9 596 59.9
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 1.7e-195 686.8 592 58.3
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 2.3e-195 686.4 627 59.0
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 8.6e-195 684.5 636 55.7
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.9e-194 683.3 598 59.0
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 5.6e-194 681.8 641 53.8
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 9.5e-194 681.0 626 58.1
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.0e-192 675.6 655 54.5
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 1.2e-191 674.1 631 55.3
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 2.0e-191 673.3 647 56.7
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.0e-191 673.3 491 68.6
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.7e-187 660.2 637 54.6
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 3.6e-185 652.5 512 65.2
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 6.4e-182 641.7 672 51.3
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 7.6e-175 618.2 643 51.9
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 1.1e-168 597.8 655 49.8
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 3.3e-162 576.2 650 48.9
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 1.6e-148 530.8 477 56.6
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 7.4e-146 521.9 663 46.3
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 5.3e-144 515.8 424 63.7
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 3.7e-137 493.0 374 66.8
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 7.7e-135 485.3 501 52.1
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 9.7e-130 468.4 364 63.7
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 7.7e-119 432.2 269 81.4
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 7.7e-119 432.2 635 39.2
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 3.0e-99 367.1 626 35.9
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 4.5e-95 353.2 628 36.1
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 8.6e-94 349.0 505 40.6
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 5.9e-87 326.2 361 46.8
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 2.4e-80 304.3 272 57.0
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.1e-75 288.9 259 55.6
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 6.2e-68 263.1 737 28.8
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 3.3e-61 240.7 617 29.0
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 1.9e-56 224.9 261 50.6
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 2.1e-55 221.5 342 39.2
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 8.7e-46 189.5 239 46.4
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 4.6e-31 140.6 80 76.2
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 1.1e-29 136.0 127 56.7
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.8e-27 128.6 237 33.3
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 8.5e-25 119.8 206 32.5
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 6.1e-23 113.6 101 49.5
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.0e-22 112.8 76 69.7
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 8.7e-22 109.8 101 58.4
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 7.4e-21 106.7 206 32.0
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.6e-20 105.5 76 67.1
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.4e-19 102.4 86 48.8
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.0e-18 98.6 62 79.0
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 7.2e-16 90.1 95 50.5
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 9.4e-16 89.7 166 34.3
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 9.4e-16 89.7 65 66.2
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 1.3e-12 79.3 101 44.6
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 3.7e-12 77.8 193 29.5
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 1.4e-08 65.9 95 43.2
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 5.2e-06 57.4 41 75.6


User provided reference genes

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