Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 1.7e-114 416.0 213 100.0
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 2.6e-49 199.5 224 56.2
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 1.8e-39 166.8 224 50.4
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 1.6e-38 163.7 216 50.9
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.6e-30 137.1 216 44.0
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 2.7e-30 136.3 189 49.2
SGA_v2.0_scaffold28G11774 Striga asiatica HOM05D000207 ORTHO05D000606 1.0e-29 134.4 229 43.7
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.1e-28 131.0 209 44.5
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 2.5e-28 129.8 214 43.5
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 4.3e-28 129.0 203 44.3
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 9.5e-28 127.9 212 42.0
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 2.1e-27 126.7 225 41.8
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 4.7e-27 125.6 202 43.6
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 1.0e-26 124.4 205 42.4
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 1.4e-26 124.0 205 42.4
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 1.8e-26 123.6 207 44.9
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 5.2e-26 122.1 230 41.7
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 6.8e-26 121.7 193 40.4
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 3.4e-25 119.4 208 40.4
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 3.4e-25 119.4 208 40.4
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 5.7e-25 118.6 195 40.5
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 9.8e-25 117.9 221 41.6
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 6.4e-24 115.2 225 38.7
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 1.1e-23 114.4 182 43.4
Oeu049982.1 Olea europaea HOM05D003792 ORTHO05D003195 1.1e-23 114.4 169 43.8
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 1.4e-23 114.0 218 37.2
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 1.4e-23 114.0 217 36.4
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.4e-23 114.0 203 40.4
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 5.4e-23 112.1 185 42.7
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.2e-22 110.9 199 40.2
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 2.0e-22 110.2 235 37.9
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 2.0e-22 110.2 194 42.8
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.7e-22 109.8 192 41.1
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 2.7e-22 109.8 238 37.4
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 4.6e-22 109.0 221 38.0
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 4.6e-22 109.0 244 36.5
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 7.8e-22 108.2 193 41.5
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 7.8e-22 108.2 192 41.7
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 1.0e-21 107.8 211 36.0
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 3.9e-21 105.9 194 41.2
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 3.9e-21 105.9 184 41.8
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 1.1e-20 104.4 192 40.6
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.5e-20 104.0 214 38.3
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 2.5e-20 103.2 205 38.5
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 2.5e-20 103.2 202 38.6
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 5.6e-20 102.1 200 38.5
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 1.2e-19 100.9 204 36.8
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 1.2e-19 100.9 204 36.8
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.6e-19 100.5 225 36.0
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 1.6e-19 100.5 193 38.3
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.6e-19 99.4 182 39.6
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 3.6e-19 99.4 191 37.2
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 4.7e-19 99.0 195 36.4
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 4.7e-19 99.0 170 38.2
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 4.7e-19 99.0 193 37.3
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.0e-18 97.8 194 38.1
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.4e-18 97.4 143 45.5
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 2.3e-18 96.7 215 35.8
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 2.3e-18 96.7 190 37.4
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.3e-18 96.7 143 44.8
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 2.3e-18 96.7 239 36.8
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 3.1e-18 96.3 269 32.0
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 3.1e-18 96.3 240 36.7
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 4.0e-18 95.9 213 38.0
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 5.2e-18 95.5 203 36.0
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 6.8e-18 95.1 209 40.2
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 6.8e-18 95.1 220 36.8
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 8.9e-18 94.7 218 37.2
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 8.9e-18 94.7 208 35.6
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 8.9e-18 94.7 177 37.9
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 1.5e-17 94.0 205 36.6
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 1.5e-17 94.0 190 37.4
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 2.0e-17 93.6 226 36.3
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 2.0e-17 93.6 216 37.0
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 2.6e-17 93.2 169 41.4
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 5.8e-17 92.0 225 34.7
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 5.8e-17 92.0 230 34.8
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 7.5e-17 91.7 187 36.4
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 7.5e-17 91.7 224 33.9
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 1.7e-16 90.5 192 34.4
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 1.7e-16 90.5 179 36.9
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 2.2e-16 90.1 207 33.3
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.9e-16 89.7 163 42.9
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 2.9e-16 89.7 198 34.8
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 3.7e-16 89.4 196 34.2
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 3.7e-16 89.4 114 44.7
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 3.7e-16 89.4 228 34.2
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 4.9e-16 89.0 214 35.5
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 4.9e-16 89.0 225 34.2
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 4.9e-16 89.0 200 34.0
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 4.9e-16 89.0 183 35.5
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.9e-16 89.0 158 41.1
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 6.4e-16 88.6 215 34.9
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 8.3e-16 88.2 208 33.7
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 8.3e-16 88.2 177 33.9
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 8.3e-16 88.2 201 35.8
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 1.1e-15 87.8 154 36.4
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.1e-15 87.8 187 41.2
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 1.4e-15 87.4 186 38.7
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 1.9e-15 87.0 216 34.7
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 1.9e-15 87.0 216 34.7
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 2.4e-15 86.7 210 35.7
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 2.4e-15 86.7 93 48.4
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 5.4e-15 85.5 202 33.7
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 2.0e-14 83.6 193 35.8
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 2.7e-14 83.2 200 34.5
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 2.7e-14 83.2 190 34.2
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 2.7e-14 83.2 188 35.6
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 3.5e-14 82.8 232 33.2
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 3.5e-14 82.8 202 36.6
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 4.6e-14 82.4 222 34.2
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 4.6e-14 82.4 222 34.2
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 1.0e-13 81.3 207 34.8
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 1.3e-13 80.9 204 33.8
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 1.7e-13 80.5 205 33.7
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 1.7e-13 80.5 205 33.7
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.7e-13 80.5 204 35.3
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.3e-13 80.1 158 39.2
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.0e-13 79.7 193 35.2
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 3.0e-13 79.7 208 32.2
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 8.6e-13 78.2 194 33.5
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 1.9e-12 77.0 190 35.3
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 2.5e-12 76.6 136 39.0
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 5.6e-12 75.5 100 43.0
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 5.6e-12 75.5 174 35.1
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 7.3e-12 75.1 118 39.8
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 9.5e-12 74.7 232 33.2
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 1.6e-11 73.9 180 34.4
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.8e-10 70.5 141 33.3
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 2.3e-10 70.1 200 33.0
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 2.3e-10 70.1 202 35.6
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 8.9e-10 68.2 202 32.2
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 2.6e-09 66.6 191 33.0
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 3.4e-09 66.2 193 32.1
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 3.4e-09 66.2 196 32.1
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 3.4e-09 66.2 155 33.5
Aqoxy5G01231 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 4.4e-09 65.9 204 31.4
SEGI_08793 Sequoiadendron giganteum HOM05D019663 ORTHO05D003195 4.4e-09 65.9 132 34.1
Os03g0184100 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 1.3e-08 64.3 182 31.3
C09p25480 Brassica napus HOM05D003792 ORTHO05D003195 2.9e-08 63.2 162 34.6
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.9e-08 63.2 204 29.9
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 4.9e-08 62.4 183 32.8
unitig_22.g6770 Utricularia gibba HOM05D061388 ORTHO05D003195 4.9e-08 62.4 88 45.5
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 1.1e-07 61.2 188 33.5
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 1.9e-07 60.5 171 27.5
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 1.9e-07 60.5 114 36.8
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 2.4e-07 60.1 188 32.4
vmacro04447 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 2.4e-07 60.1 204 30.9
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 3.2e-07 59.7 193 30.6
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 3.2e-07 59.7 99 38.4
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 5.4e-07 58.9 200 30.5
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 1.2e-06 57.8 202 33.7
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 2.1e-06 57.0 184 30.4
unitig_8.g3371 Utricularia gibba HOM05D061388 ORTHO05D003195 2.1e-06 57.0 35 74.3
AL7G17410 Arabidopsis lyrata HOM05D009953 ORTHO05D003195 2.7e-06 56.6 175 30.9
SEGI_40396 Sequoiadendron giganteum HOM05D003792 ORTHO05D003195 2.7e-06 56.6 128 33.6
Nn1g04847 Nelumbo nucifera HOM05D003792 ORTHO05D003195 3.5e-06 56.2 191 29.3
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.6e-06 55.8 176 31.2
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 4.6e-06 55.8 194 32.0
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 6.0e-06 55.5 218 27.5
CARHR242110 Cardamine hirsuta HOM05D009953 ORTHO05D003195 7.8e-06 55.1 169 29.6
Potri.009G101400 Populus trichocarpa HOM05D003792 ORTHO05D003195 7.8e-06 55.1 191 33.5


User provided reference genes

Program Settings