Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 2.5e-214 749.2 625 100.0
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 2.0e-118 430.6 449 54.6
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 3.7e-96 356.7 459 45.1
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 5.9e-94 349.4 466 44.4
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 1.4e-92 344.7 352 49.7
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 1.6e-91 341.3 441 44.4
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 3.6e-91 340.1 443 44.9
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 3.9e-90 336.7 445 44.3
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 9.7e-89 332.0 447 45.2
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 1.8e-87 327.8 331 53.8
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 3.1e-87 327.0 380 47.4
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 2.9e-85 320.5 371 46.6
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 4.2e-84 316.6 444 43.9
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 6.1e-83 312.8 428 42.3
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 2.6e-78 297.4 453 40.6
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 8.5e-77 292.4 391 42.2
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 8.5e-77 292.4 433 40.9
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 3.2e-76 290.4 270 57.4
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 2.3e-74 284.3 381 48.6
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 4.4e-73 280.0 446 40.4
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 1.7e-72 278.1 435 49.0
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 2.2e-72 277.7 434 40.6
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.4e-71 275.0 432 39.1
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 1.8e-71 274.6 351 47.6
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 1.8e-71 274.6 363 42.4
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 2.4e-71 274.2 438 38.4
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 4.1e-71 273.5 354 42.4
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 3.5e-70 270.4 365 40.5
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 3.5e-70 270.4 382 38.7
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 1.1e-68 265.4 377 40.1
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 1.9e-68 264.6 437 37.1
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.9e-68 264.6 434 49.3
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 9.4e-68 262.3 441 36.1
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 9.4e-68 262.3 435 37.7
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 1.2e-67 261.9 377 39.5
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 1.6e-67 261.5 367 39.0
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 4.7e-67 260.0 351 39.3
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 1.4e-66 258.5 437 40.5
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 1.4e-66 258.5 428 38.1
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 2.3e-66 257.7 435 37.0
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 6.8e-66 256.1 356 41.0
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 1.5e-65 255.0 403 37.5
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 7.5e-65 252.7 364 40.4
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 9.8e-65 252.3 368 37.5
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 1.7e-64 251.5 426 46.7
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 1.7e-64 251.5 349 39.0
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 2.8e-64 250.8 330 42.1
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 1.1e-63 248.8 350 39.4
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 4.5e-62 243.4 348 48.6
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 3.3e-60 237.3 214 55.1
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 5.5e-60 236.5 434 35.9
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 1.0e-58 232.3 330 41.5
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 2.3e-58 231.1 332 38.6
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 3.0e-58 230.7 443 36.3
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 3.0e-58 230.7 329 43.2
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 8.9e-58 229.2 343 37.9
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 2.6e-57 227.6 352 39.8
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 3.4e-57 227.3 339 38.6
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 4.4e-57 226.9 325 39.1
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 4.9e-56 223.4 326 39.6
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 8.3e-56 222.6 336 37.2
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 1.8e-55 221.5 255 46.3
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 2.4e-55 221.1 325 38.8
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 5.4e-55 219.9 263 44.1
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 9.2e-55 219.2 267 43.1
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 4.5e-54 216.9 435 36.3
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 1.3e-53 215.3 263 43.0
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 1.7e-53 214.9 325 39.1
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 1.1e-52 212.2 263 42.2
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 1.5e-52 211.8 435 35.6
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 2.5e-52 211.1 334 35.9
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 2.5e-52 211.1 336 36.0
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 1.6e-51 208.4 334 35.0
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 8.0e-51 206.1 316 37.3
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 4.0e-50 203.8 334 34.7
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 4.0e-50 203.8 334 34.4
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 4.0e-50 203.8 334 34.4
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 1.2e-49 202.2 334 34.4
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 4.4e-49 200.3 347 32.6
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 4.9e-48 196.8 265 43.8
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 2.0e-46 191.4 334 33.8
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 3.5e-46 190.7 251 43.0
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 6.0e-46 189.9 347 32.3
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 5.6e-44 183.3 265 41.1
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 9.5e-44 182.6 214 46.7
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.1e-43 181.4 215 46.5
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 5.2e-42 176.8 223 40.8
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 8.9e-42 176.0 267 37.1
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 4.4e-41 173.7 267 36.3
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 6.4e-40 169.9 330 37.0
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 4.1e-39 167.2 206 46.1
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 6.0e-38 163.3 266 38.7
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 3.9e-37 160.6 264 40.2
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 6.2e-35 153.3 182 41.8
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 3.1e-34 151.0 210 39.0
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 5.6e-28 130.2 206 48.1
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 6.2e-27 126.7 440 27.5
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 8.7e-21 106.3 135 43.0
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 2.5e-20 104.8 212 32.1
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 2.5e-20 104.8 135 37.0
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 1.6e-14 85.5 54 70.4
SEGI_25718 Sequoiadendron giganteum HOM05D007280 ORTHO05D009108 3.3e-12 77.8 140 31.4
MBI03_g47433_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 1.8e-10 72.0 41 78.0


User provided reference genes

Program Settings